Wall clock time and date at job start Tue Mar 31 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47444 * 2 1 4 4 H 1.09001 * 109.46520 * 305.53687 * 3 2 1 5 5 C 1.50702 * 109.46927 * 185.54120 * 3 2 1 6 6 O 1.21289 * 119.99885 * 263.91752 * 5 3 2 7 7 N 1.34773 * 120.00153 * 83.92309 * 5 3 2 8 8 C 1.37097 * 120.00035 * 355.29457 * 7 5 3 9 9 H 1.08005 * 119.99737 * 38.12334 * 8 7 5 10 10 C 1.38951 * 120.00214 * 217.84266 * 8 7 5 11 11 N 1.31404 * 120.00012 * 21.08072 * 10 8 7 12 12 Si 1.86799 * 120.00088 * 201.07966 * 10 8 7 13 13 H 1.48507 * 109.47287 * 90.00016 * 12 10 8 14 14 H 1.48500 * 109.47384 * 209.99965 * 12 10 8 15 15 H 1.48497 * 109.47396 * 330.00048 * 12 10 8 16 16 C 1.46498 * 120.00267 * 175.30254 * 7 5 3 17 17 C 1.53006 * 109.46831 * 269.64835 * 16 7 5 18 18 O 1.42901 * 109.47346 * 64.99657 * 17 16 7 19 19 C 1.42900 * 114.00118 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47177 * 65.53819 * 3 2 1 21 21 C 1.38235 * 119.99665 * 59.72761 * 20 3 2 22 22 C 1.38232 * 119.99710 * 179.78588 * 21 20 3 23 23 C 1.38237 * 120.00043 * 0.44671 * 22 21 20 24 24 C 1.38235 * 120.00156 * 359.80453 * 23 22 21 25 25 C 1.38229 * 119.99820 * 240.00124 * 20 3 2 26 26 H 1.08994 * 109.47883 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46632 * 300.00394 * 1 2 3 28 28 H 1.09004 * 109.47160 * 59.99632 * 1 2 3 29 29 H 1.09000 * 109.47029 * 240.00058 * 2 1 3 30 30 H 1.09004 * 109.47160 * 120.00368 * 2 1 3 31 31 H 0.97004 * 120.00475 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47172 * 29.64328 * 16 7 5 33 33 H 1.09000 * 109.47833 * 149.64503 * 16 7 5 34 34 H 1.09002 * 109.47041 * 184.99669 * 17 16 7 35 35 H 1.09002 * 109.47030 * 304.99675 * 17 16 7 36 36 H 1.08995 * 109.46955 * 59.99995 * 19 18 17 37 37 H 1.08997 * 109.46990 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47019 * 300.00299 * 19 18 17 39 39 H 1.08004 * 120.00361 * 359.97438 * 21 20 3 40 40 H 1.07996 * 120.00407 * 180.27091 * 22 21 20 41 41 H 1.08002 * 120.00040 * 179.83180 * 23 22 21 42 42 H 1.07992 * 120.00585 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.00325 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 3.5408 1.4446 -0.1372 6 8 4.2400 1.5230 0.8508 7 7 4.1061 1.3594 -1.3577 8 6 3.3202 1.1738 -2.4656 9 1 2.3631 1.6691 -2.5379 10 6 3.7576 0.3532 -3.4982 11 7 4.6821 -0.5524 -3.2710 12 14 3.0312 0.5375 -5.2093 13 1 3.8318 1.5197 -5.9838 14 1 3.0551 -0.7761 -5.9013 15 1 1.6293 1.0156 -5.1031 16 6 5.5602 1.4648 -1.5005 17 6 5.9468 2.9298 -1.7138 18 8 5.6263 3.6825 -0.5421 19 6 5.9488 5.0714 -0.6373 20 6 1.6529 2.1123 1.2933 21 6 2.0943 1.5970 2.4976 22 6 1.7428 2.2139 3.6837 23 6 0.9422 3.3407 3.6659 24 6 0.4965 3.8529 2.4618 25 6 0.8516 3.2385 1.2755 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.9878 -1.1251 -3.9918 32 1 6.0422 1.0897 -0.5976 33 1 5.8850 0.8749 -2.3576 34 1 7.0171 2.9986 -1.9083 35 1 5.3963 3.3306 -2.5650 36 1 5.3980 5.5163 -1.4659 37 1 5.6756 5.5722 0.2915 38 1 7.0190 5.1849 -0.8098 39 1 2.7164 0.7142 2.5118 40 1 2.0913 1.8139 4.6244 41 1 0.6654 3.8211 4.5927 42 1 -0.1286 4.7334 2.4478 43 1 0.5034 3.6387 0.3347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316572531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:30 Heat of formation + Delta-G solvation = -73.584738 kcal Electronic energy + Delta-G solvation = -24519.880277 eV Core-core repulsion = 21143.533443 eV Total energy + Delta-G solvation = -3376.346834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10579 -39.62066 -38.48490 -36.57054 -35.75319 -33.47287 -31.70609 -31.39385 -31.04047 -28.04285 -27.16884 -26.54923 -23.80303 -23.71444 -23.01317 -21.68930 -20.68936 -18.71763 -17.97651 -17.41810 -17.19017 -16.97579 -16.30446 -16.17392 -15.94686 -15.78368 -15.44182 -15.14473 -14.97963 -14.50890 -14.10135 -13.90609 -13.56536 -13.33007 -13.25884 -13.20935 -13.08020 -12.77741 -12.65132 -12.53448 -12.38346 -12.14953 -11.98938 -11.94901 -11.92113 -11.54225 -11.41117 -10.97419 -10.55583 -10.13685 -9.63326 -9.47932 -9.32221 -8.24299 -5.99582 0.58313 0.66015 1.44591 1.50183 1.59542 2.18492 2.36139 2.88937 2.99210 3.12507 3.23892 3.89712 4.06005 4.23915 4.26317 4.30666 4.33115 4.36551 4.39071 4.41799 4.51527 4.54952 4.62111 4.68422 4.73860 4.76899 4.81214 4.88845 5.02772 5.05769 5.16089 5.22741 5.28871 5.29745 5.35682 5.47681 5.55514 5.69246 5.73659 5.94452 6.11740 6.26692 6.36877 6.51388 7.21211 7.71010 8.17950 8.78817 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.006638 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.021171 B = 4217.346034 C = 5380.143375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.043 4.043 4 H 0.088 0.912 5 C 0.479 3.521 6 O -0.612 6.612 7 N -0.451 5.451 8 C -0.344 4.344 9 H 0.092 0.908 10 C 0.006 3.994 11 N -0.894 5.894 12 Si 0.974 3.026 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.258 1.258 16 C 0.117 3.883 17 C 0.060 3.940 18 O -0.405 6.405 19 C 0.028 3.972 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 7.455 4.259 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.065 4.065 4 H 0.107 0.893 5 C 0.268 3.732 6 O -0.498 6.498 7 N -0.170 5.170 8 C -0.472 4.472 9 H 0.110 0.890 10 C -0.196 4.196 11 N -0.532 5.532 12 Si 0.798 3.202 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.182 1.182 16 C -0.007 4.007 17 C -0.017 4.017 18 O -0.324 6.324 19 C -0.069 4.069 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.293 7.255 4.781 10.728 hybrid contribution 0.553 -0.226 -1.297 1.428 sum -5.740 7.029 3.484 9.721 Atomic orbital electron populations 1.21656 0.93208 1.02183 1.02037 1.21255 0.97570 0.93440 1.01138 1.20006 0.92330 0.98255 0.95868 0.89347 1.20799 0.90679 0.78779 0.82936 1.90490 1.65083 1.55836 1.38391 1.43444 1.05098 1.63147 1.05271 1.19601 1.03895 1.27517 0.96147 0.89019 1.26071 0.97407 0.92907 1.03254 1.70018 1.31582 1.17783 1.33820 0.85217 0.79428 0.77417 0.78137 1.19971 1.21191 1.18223 1.21354 0.83498 0.93996 1.01889 1.22922 0.98642 0.92696 0.87489 1.88092 1.85221 1.20728 1.38344 1.22839 0.99862 0.81791 1.02378 1.19606 0.97458 0.96204 0.93776 1.20956 0.97810 1.00123 0.92877 1.21345 0.99135 0.97121 0.97682 1.21410 0.97931 0.96101 0.99015 1.21366 1.00615 1.00452 0.91833 1.21227 0.98716 0.95200 0.99492 0.91610 0.92488 0.92087 0.92459 0.93560 0.91963 0.94469 0.87796 0.91850 0.93569 0.93828 0.89556 0.92923 0.88611 0.84919 0.83364 0.83380 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.73 71.98 0.70 -3.36 16 2 C -0.10 -3.75 5.22 30.59 0.16 -3.59 16 3 C -0.04 -1.83 1.67 -12.28 -0.02 -1.85 16 4 H 0.09 3.65 6.29 -2.39 -0.02 3.63 16 5 C 0.48 24.31 6.31 87.66 0.55 24.86 16 6 O -0.61 -34.19 13.64 -2.30 -0.03 -34.22 16 7 N -0.45 -23.13 2.50 -635.53 -1.59 -24.72 16 8 C -0.34 -17.10 7.91 84.04 0.66 -16.44 16 9 H 0.09 4.38 6.49 -2.91 -0.02 4.36 16 10 C 0.01 0.31 4.96 84.93 0.42 0.73 16 11 N -0.89 -46.70 11.46 21.66 0.25 -46.45 16 12 Si 0.97 38.46 29.60 68.60 2.03 40.49 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 14 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 16 C 0.12 5.80 5.48 86.38 0.47 6.28 16 17 C 0.06 2.53 6.28 71.98 0.45 2.98 16 18 O -0.40 -17.74 9.73 -148.22 -1.44 -19.19 16 19 C 0.03 0.87 11.01 113.37 1.25 2.12 16 20 C -0.07 -2.67 3.64 -19.87 -0.07 -2.74 16 21 C -0.10 -3.80 7.82 22.27 0.17 -3.62 16 22 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 23 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 24 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 25 C -0.13 -4.11 9.67 22.27 0.22 -3.89 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.65 7.40 -2.38 -0.02 1.64 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.53 7.43 -2.39 -0.02 2.51 16 30 H 0.05 1.86 7.19 -2.39 -0.02 1.84 16 31 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 32 H 0.04 1.99 7.35 -2.38 -0.02 1.97 16 33 H 0.10 5.35 5.53 -2.39 -0.01 5.33 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 4.09 6.89 -2.91 -0.02 4.07 16 40 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 43 H 0.13 3.66 7.95 -2.91 -0.02 3.63 16 Total: -1.00 -64.73 350.09 5.84 -58.89 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.98 Total: 33.81 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.64 Total: -8.62 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.34 Total: -71.17 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.47 Total: -53.40 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -64.73 5.84 -58.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316572531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.694 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds