Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47405 * 2 1 4 4 H 1.08996 * 109.46761 * 305.02150 * 3 2 1 5 5 C 1.50700 * 109.46760 * 65.02110 * 3 2 1 6 6 O 1.21292 * 120.00199 * 32.32473 * 5 3 2 7 7 N 1.34776 * 119.99722 * 212.32141 * 5 3 2 8 8 C 1.37093 * 120.00274 * 5.59473 * 7 5 3 9 9 H 1.08008 * 119.99775 * 323.76938 * 8 7 5 10 10 C 1.38944 * 120.00234 * 143.77017 * 8 7 5 11 11 N 1.31413 * 120.00078 * 339.01673 * 10 8 7 12 12 Si 1.86803 * 120.00080 * 159.01564 * 10 8 7 13 13 H 1.48509 * 109.47053 * 90.00197 * 12 10 8 14 14 H 1.48503 * 109.47409 * 209.99876 * 12 10 8 15 15 H 1.48497 * 109.47105 * 330.00225 * 12 10 8 16 16 C 1.46507 * 119.99714 * 185.59394 * 7 5 3 17 17 C 1.53002 * 109.47240 * 85.61599 * 16 7 5 18 18 O 1.42897 * 109.47111 * 64.99698 * 17 16 7 19 19 C 1.42895 * 113.99905 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46915 * 185.01933 * 3 2 1 21 21 C 1.38229 * 120.00348 * 299.72812 * 20 3 2 22 22 C 1.38238 * 119.99960 * 179.79085 * 21 20 3 23 23 C 1.38238 * 119.99826 * 0.43951 * 22 21 20 24 24 C 1.38229 * 119.99860 * 359.81205 * 23 22 21 25 25 C 1.38235 * 120.00647 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.46866 * 302.63751 * 1 2 3 27 27 H 1.08999 * 109.47170 * 62.63863 * 1 2 3 28 28 H 1.08997 * 109.47203 * 182.63935 * 1 2 3 29 29 H 1.09004 * 109.47179 * 239.99833 * 2 1 3 30 30 H 1.09003 * 109.46820 * 120.00314 * 2 1 3 31 31 H 0.96997 * 120.00303 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.46773 * 205.61412 * 16 7 5 33 33 H 1.08994 * 109.46936 * 325.60986 * 16 7 5 34 34 H 1.08998 * 109.46887 * 185.00198 * 17 16 7 35 35 H 1.09003 * 109.46689 * 304.99944 * 17 16 7 36 36 H 1.08996 * 109.47806 * 300.00100 * 19 18 17 37 37 H 1.09001 * 109.47349 * 60.00430 * 19 18 17 38 38 H 1.09005 * 109.47514 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.99791 * 359.97438 * 21 20 3 40 40 H 1.07997 * 120.00038 * 180.27244 * 22 21 20 41 41 H 1.08000 * 119.99648 * 179.83232 * 23 22 21 42 42 H 1.08006 * 119.99895 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00425 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9816 -0.8416 5 6 1.6418 2.1160 1.2879 6 8 1.5648 1.4700 2.3116 7 7 1.3713 3.4363 1.3023 8 6 1.3461 4.1437 0.1282 9 1 2.0421 3.9035 -0.6620 10 6 0.4253 5.1696 -0.0451 11 7 -0.6615 5.2087 0.6926 12 14 0.7322 6.4935 -1.3268 13 1 0.1373 6.0760 -2.6219 14 1 0.1087 7.7661 -0.8832 15 1 2.1944 6.6907 -1.4944 16 6 1.1042 4.1155 2.5726 17 6 2.4276 4.5425 3.2108 18 8 3.0609 5.5214 2.3846 19 6 4.3112 5.9902 2.8933 20 6 3.5419 1.4442 -0.1243 21 6 4.3158 0.8213 0.8369 22 6 5.6932 0.8191 0.7205 23 6 6.2972 1.4478 -0.3524 24 6 5.5235 2.0751 -1.3108 25 6 4.1459 2.0735 -1.1968 26 1 -0.3633 0.5543 0.8655 27 1 -0.3633 0.4723 -0.9127 28 1 -0.3633 -1.0265 0.0473 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 -1.3046 5.9247 0.5714 32 1 0.4876 4.9958 2.3913 33 1 0.5793 3.4363 3.2443 34 1 2.2354 4.9677 4.1959 35 1 3.0795 3.6746 3.3107 36 1 4.1578 6.4457 3.8715 37 1 5.0025 5.1526 2.9869 38 1 4.7276 6.7296 2.2091 39 1 3.8440 0.3337 1.6773 40 1 6.2977 0.3287 1.4692 41 1 7.3735 1.4484 -0.4418 42 1 5.9954 2.5666 -2.1488 43 1 3.5414 2.5633 -1.9459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316572532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = -59.425821 kcal Electronic energy + Delta-G solvation = -24778.704616 eV Core-core repulsion = 21402.971759 eV Total energy + Delta-G solvation = -3375.732858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.57438 -38.12513 -36.94980 -34.85159 -33.90145 -31.53810 -30.64534 -30.42630 -29.25984 -26.34691 -25.69975 -24.58991 -22.58894 -22.19133 -21.53881 -20.39440 -18.79892 -16.95301 -16.32201 -16.25285 -15.41908 -15.31432 -14.92629 -14.53032 -14.34666 -14.14550 -13.98434 -13.72218 -13.40924 -12.97702 -12.92888 -12.35395 -12.12707 -11.97977 -11.73076 -11.48082 -11.40611 -11.16203 -11.06689 -10.97448 -10.79431 -10.65408 -10.45547 -10.34976 -10.22557 -10.14649 -9.84500 -9.10873 -8.93117 -8.60811 -8.49747 -8.00982 -7.42955 -6.29105 -3.93134 1.76912 1.82216 3.17700 3.28352 3.34986 3.90004 4.16336 4.26181 4.54137 4.79720 5.09486 5.26470 5.31635 5.35231 5.53611 5.66638 5.68457 5.74572 5.77513 5.91994 5.95142 5.98038 6.01533 6.07158 6.12170 6.30867 6.35100 6.37255 6.43679 6.45262 6.51176 6.57894 6.78158 6.80765 6.87122 6.89177 6.94855 7.19996 7.31718 7.42164 7.53906 7.86357 8.05560 8.43974 9.17749 9.59027 10.00044 10.74078 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.007458 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.011318 B = 3753.450405 C = 4169.149903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.062 4.062 4 H 0.102 0.898 5 C 0.484 3.516 6 O -0.607 6.607 7 N -0.426 5.426 8 C -0.319 4.319 9 H 0.086 0.914 10 C 0.048 3.952 11 N -0.863 5.863 12 Si 0.910 3.090 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.268 1.268 16 C 0.113 3.887 17 C 0.053 3.947 18 O -0.363 6.363 19 C 0.032 3.968 20 C -0.051 4.051 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 -3.473 -1.368 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.083 4.083 4 H 0.121 0.879 5 C 0.273 3.727 6 O -0.494 6.494 7 N -0.142 5.142 8 C -0.447 4.447 9 H 0.104 0.896 10 C -0.157 4.157 11 N -0.500 5.500 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.209 1.209 15 H -0.193 1.193 16 C -0.011 4.011 17 C -0.024 4.024 18 O -0.281 6.281 19 C -0.066 4.066 20 C -0.052 4.052 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.125 4.125 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.076 -3.554 -1.006 8.880 hybrid contribution 0.384 0.928 -0.316 1.053 sum 8.460 -2.625 -1.321 8.956 Atomic orbital electron populations 1.21721 0.95624 1.00625 1.02485 1.21335 0.96097 0.94623 1.01451 1.20230 0.91297 0.97013 0.99784 0.87941 1.20049 0.81308 0.82233 0.89157 1.90488 1.59223 1.64504 1.35181 1.43291 1.59872 1.05037 1.06023 1.19236 1.16189 1.15470 0.93764 0.89620 1.25216 0.93514 0.99091 0.97849 1.69909 1.07577 1.32012 1.40548 0.86222 0.79032 0.80780 0.80331 1.20619 1.20900 1.19266 1.21446 0.93806 0.99730 0.86075 1.23033 0.96321 0.90365 0.92708 1.88139 1.33479 1.58538 1.47900 1.22629 0.87314 0.98306 0.98320 1.19667 0.94754 0.96445 0.94324 1.21154 0.93451 0.99224 0.98729 1.21050 0.94763 1.00475 0.98160 1.21006 0.99154 0.99527 0.95397 1.21037 0.93912 1.00102 0.99179 1.21122 0.94619 0.98682 0.98105 0.91872 0.93005 0.93568 0.92561 0.91346 0.92241 0.86812 0.91230 0.94424 0.94375 0.95236 0.95064 0.90497 0.85696 0.86761 0.86882 0.86591 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.76 37.16 0.36 -2.26 16 2 C -0.10 -1.74 4.88 -26.73 -0.13 -1.87 16 3 C -0.06 -1.25 1.70 -92.92 -0.16 -1.41 16 4 H 0.10 2.14 6.19 -51.93 -0.32 1.81 16 5 C 0.48 11.50 5.30 -10.99 -0.06 11.44 16 6 O -0.61 -15.40 15.03 5.55 0.08 -15.32 16 7 N -0.43 -10.62 2.50 -114.81 -0.29 -10.91 16 8 C -0.32 -8.07 8.03 -14.94 -0.12 -8.19 16 9 H 0.09 2.11 6.54 -52.48 -0.34 1.77 16 10 C 0.05 1.23 4.94 -17.47 -0.09 1.14 16 11 N -0.86 -22.82 11.41 55.50 0.63 -22.19 16 12 Si 0.91 20.06 29.60 -169.99 -5.03 15.03 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 C 0.11 2.73 5.36 -4.04 -0.02 2.71 16 17 C 0.05 1.14 6.25 37.16 0.23 1.37 16 18 O -0.36 -7.92 10.39 -35.23 -0.37 -8.28 16 19 C 0.03 0.53 11.01 101.05 1.11 1.64 16 20 C -0.05 -0.96 4.77 -104.62 -0.50 -1.46 16 21 C -0.11 -1.92 8.86 -39.58 -0.35 -2.27 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.12 -1.87 10.05 -39.59 -0.40 -2.26 16 25 C -0.11 -1.84 9.40 -39.58 -0.37 -2.21 16 26 H 0.06 1.31 7.07 -51.93 -0.37 0.95 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.27 7.12 -51.93 -0.37 0.90 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.11 2.94 5.46 -51.93 -0.28 2.66 16 33 H 0.07 1.69 7.48 -51.93 -0.39 1.30 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.13 2.33 7.26 -52.48 -0.38 1.95 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.12 1.99 7.89 -52.49 -0.41 1.58 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -29.13 353.29 -7.58 -36.71 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.65 Total: 7.90 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.28 Total: -8.26 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.35 Total: -33.10 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.28 Total: -23.60 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.13 -7.58 -36.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316572532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.716 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds