Wall clock time and date at job start Tue Mar 31 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47405 * 2 1 4 4 H 1.08996 * 109.46761 * 305.02150 * 3 2 1 5 5 C 1.50700 * 109.46760 * 65.02110 * 3 2 1 6 6 O 1.21292 * 120.00199 * 32.32473 * 5 3 2 7 7 N 1.34776 * 119.99722 * 212.32141 * 5 3 2 8 8 C 1.37093 * 120.00274 * 5.59473 * 7 5 3 9 9 H 1.08008 * 119.99775 * 323.76938 * 8 7 5 10 10 C 1.38944 * 120.00234 * 143.77017 * 8 7 5 11 11 N 1.31413 * 120.00078 * 339.01673 * 10 8 7 12 12 Si 1.86803 * 120.00080 * 159.01564 * 10 8 7 13 13 H 1.48509 * 109.47053 * 90.00197 * 12 10 8 14 14 H 1.48503 * 109.47409 * 209.99876 * 12 10 8 15 15 H 1.48497 * 109.47105 * 330.00225 * 12 10 8 16 16 C 1.46507 * 119.99714 * 185.59394 * 7 5 3 17 17 C 1.53002 * 109.47240 * 85.61599 * 16 7 5 18 18 O 1.42897 * 109.47111 * 64.99698 * 17 16 7 19 19 C 1.42895 * 113.99905 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46915 * 185.01933 * 3 2 1 21 21 C 1.38229 * 120.00348 * 299.72812 * 20 3 2 22 22 C 1.38238 * 119.99960 * 179.79085 * 21 20 3 23 23 C 1.38238 * 119.99826 * 0.43951 * 22 21 20 24 24 C 1.38229 * 119.99860 * 359.81205 * 23 22 21 25 25 C 1.38235 * 120.00647 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.46866 * 302.63751 * 1 2 3 27 27 H 1.08999 * 109.47170 * 62.63863 * 1 2 3 28 28 H 1.08997 * 109.47203 * 182.63935 * 1 2 3 29 29 H 1.09004 * 109.47179 * 239.99833 * 2 1 3 30 30 H 1.09003 * 109.46820 * 120.00314 * 2 1 3 31 31 H 0.96997 * 120.00303 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.46773 * 205.61412 * 16 7 5 33 33 H 1.08994 * 109.46936 * 325.60986 * 16 7 5 34 34 H 1.08998 * 109.46887 * 185.00198 * 17 16 7 35 35 H 1.09003 * 109.46689 * 304.99944 * 17 16 7 36 36 H 1.08996 * 109.47806 * 300.00100 * 19 18 17 37 37 H 1.09001 * 109.47349 * 60.00430 * 19 18 17 38 38 H 1.09005 * 109.47514 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.99791 * 359.97438 * 21 20 3 40 40 H 1.07997 * 120.00038 * 180.27244 * 22 21 20 41 41 H 1.08000 * 119.99648 * 179.83232 * 23 22 21 42 42 H 1.08006 * 119.99895 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00425 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9816 -0.8416 5 6 1.6418 2.1160 1.2879 6 8 1.5648 1.4700 2.3116 7 7 1.3713 3.4363 1.3023 8 6 1.3461 4.1437 0.1282 9 1 2.0421 3.9035 -0.6620 10 6 0.4253 5.1696 -0.0451 11 7 -0.6615 5.2087 0.6926 12 14 0.7322 6.4935 -1.3268 13 1 0.1373 6.0760 -2.6219 14 1 0.1087 7.7661 -0.8832 15 1 2.1944 6.6907 -1.4944 16 6 1.1042 4.1155 2.5726 17 6 2.4276 4.5425 3.2108 18 8 3.0609 5.5214 2.3846 19 6 4.3112 5.9902 2.8933 20 6 3.5419 1.4442 -0.1243 21 6 4.3158 0.8213 0.8369 22 6 5.6932 0.8191 0.7205 23 6 6.2972 1.4478 -0.3524 24 6 5.5235 2.0751 -1.3108 25 6 4.1459 2.0735 -1.1968 26 1 -0.3633 0.5543 0.8655 27 1 -0.3633 0.4723 -0.9127 28 1 -0.3633 -1.0265 0.0473 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 -1.3046 5.9247 0.5714 32 1 0.4876 4.9958 2.3913 33 1 0.5793 3.4363 3.2443 34 1 2.2354 4.9677 4.1959 35 1 3.0795 3.6746 3.3107 36 1 4.1578 6.4457 3.8715 37 1 5.0025 5.1526 2.9869 38 1 4.7276 6.7296 2.2091 39 1 3.8440 0.3337 1.6773 40 1 6.2977 0.3287 1.4692 41 1 7.3735 1.4484 -0.4418 42 1 5.9954 2.5666 -2.1488 43 1 3.5414 2.5633 -1.9459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316572532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:33 Heat of formation + Delta-G solvation = -74.797910 kcal Electronic energy + Delta-G solvation = -24779.371200 eV Core-core repulsion = 21402.971759 eV Total energy + Delta-G solvation = -3376.399441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18106 -39.63392 -38.56706 -36.66739 -35.50973 -33.47354 -31.99704 -31.67886 -30.97531 -27.81176 -27.25488 -26.42448 -24.22696 -23.52618 -22.86014 -22.02323 -20.62885 -18.60909 -18.06233 -17.67044 -17.08286 -16.97098 -16.36195 -16.16552 -16.08463 -15.64087 -15.49961 -15.20777 -15.03100 -14.39539 -14.19816 -13.94136 -13.70905 -13.49581 -13.30221 -13.22328 -12.89832 -12.84485 -12.70851 -12.53876 -12.43974 -12.16073 -12.10537 -11.88281 -11.81719 -11.62651 -11.48631 -10.96520 -10.55105 -10.32347 -9.74272 -9.47026 -9.36322 -8.22200 -5.91425 0.50863 0.57538 1.42395 1.49569 1.60616 2.08783 2.37866 2.87696 2.98555 3.07200 3.23835 3.87563 4.02431 4.15671 4.20579 4.22934 4.29100 4.34228 4.36558 4.49338 4.51607 4.54728 4.60144 4.62321 4.68915 4.75459 4.79449 4.88182 4.90028 4.97748 5.08105 5.20594 5.22833 5.33615 5.36488 5.42153 5.56595 5.65524 5.66763 5.85414 6.06856 6.20362 6.39500 6.49279 7.23103 7.69169 8.09937 8.81712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.007458 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.011318 B = 3753.450405 C = 4169.149903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.055 4.055 4 H 0.091 0.909 5 C 0.478 3.522 6 O -0.632 6.632 7 N -0.438 5.438 8 C -0.325 4.325 9 H 0.089 0.911 10 C 0.008 3.992 11 N -0.895 5.895 12 Si 0.970 3.030 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.111 3.889 17 C 0.067 3.933 18 O -0.394 6.394 19 C 0.026 3.974 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.122 4.122 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -3.155 -2.739 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.076 4.076 4 H 0.109 0.891 5 C 0.268 3.732 6 O -0.520 6.520 7 N -0.155 5.155 8 C -0.453 4.453 9 H 0.107 0.893 10 C -0.194 4.194 11 N -0.533 5.533 12 Si 0.794 3.206 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.013 4.013 17 C -0.010 4.010 18 O -0.313 6.313 19 C -0.070 4.070 20 C -0.074 4.074 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.140 4.140 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.656 -3.241 -2.382 11.390 hybrid contribution -0.348 0.795 0.157 0.882 sum 10.308 -2.446 -2.224 10.825 Atomic orbital electron populations 1.21679 0.95699 1.01775 1.00806 1.21329 0.95945 0.93511 1.02207 1.20156 0.93010 0.97539 0.96927 0.89065 1.20701 0.80331 0.81929 0.90262 1.90451 1.60079 1.64966 1.36503 1.43496 1.60176 1.05636 1.06204 1.19431 1.16164 1.15694 0.93979 0.89300 1.25954 0.93114 1.00611 0.99727 1.70012 1.08397 1.32664 1.42255 0.85294 0.78835 0.78031 0.78396 1.19611 1.21109 1.18947 1.21370 0.95287 0.98601 0.86062 1.22780 0.94521 0.90307 0.93434 1.88069 1.35681 1.58462 1.49040 1.22865 0.85324 0.98897 0.99920 1.19604 0.93601 0.98386 0.95825 1.21115 0.94867 1.00173 0.98330 1.21358 0.93729 1.00165 0.99145 1.21444 1.01036 0.97669 0.94086 1.21416 0.92955 0.99445 1.00107 1.21265 0.95999 0.98907 0.97853 0.95728 0.92576 0.90791 0.89788 0.92375 0.92233 0.88616 0.92750 0.91752 0.95560 0.92949 0.94561 0.88811 0.87666 0.84295 0.83154 0.83574 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.76 71.98 0.70 -4.44 16 2 C -0.09 -3.33 4.88 30.59 0.15 -3.18 16 3 C -0.06 -2.28 1.70 -12.29 -0.02 -2.30 16 4 H 0.09 3.90 6.19 -2.39 -0.01 3.89 16 5 C 0.48 23.60 5.30 87.66 0.46 24.06 16 6 O -0.63 -33.59 15.03 -3.07 -0.05 -33.63 16 7 N -0.44 -22.64 2.50 -635.53 -1.59 -24.23 16 8 C -0.32 -16.74 8.03 84.04 0.68 -16.07 16 9 H 0.09 4.43 6.54 -2.91 -0.02 4.41 16 10 C 0.01 0.41 4.94 84.92 0.42 0.83 16 11 N -0.89 -48.55 11.41 21.66 0.25 -48.31 16 12 Si 0.97 41.10 29.60 68.60 2.03 43.13 16 13 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 14 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 16 C 0.11 5.56 5.36 86.38 0.46 6.02 16 17 C 0.07 2.89 6.25 71.98 0.45 3.34 16 18 O -0.39 -16.99 10.39 -148.98 -1.55 -18.53 16 19 C 0.03 0.82 11.01 113.37 1.25 2.07 16 20 C -0.07 -2.74 4.77 -19.87 -0.09 -2.84 16 21 C -0.13 -4.50 8.86 22.27 0.20 -4.30 16 22 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 23 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 24 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 25 C -0.12 -4.02 9.40 22.27 0.21 -3.81 16 26 H 0.02 1.05 7.07 -2.38 -0.02 1.03 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.21 7.12 -2.39 -0.02 2.20 16 31 H 0.27 13.80 8.31 -92.71 -0.77 13.02 16 32 H 0.10 5.15 5.46 -2.39 -0.01 5.14 16 33 H 0.05 2.80 7.48 -2.39 -0.02 2.78 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.11 4.07 7.26 -2.91 -0.02 4.05 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.12 3.92 7.89 -2.91 -0.02 3.89 16 Total: -1.00 -64.70 353.29 5.61 -59.09 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.98 Total: 32.33 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.53 Total: -9.84 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.34 Total: -72.53 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.59 Total: -52.17 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -64.70 5.61 -59.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316572532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.713 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds