Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.53009 * 109.46823 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46857 * 179.97438 * 4 3 2 6 6 C 1.42904 * 114.00034 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46603 * 29.99613 * 6 5 4 8 8 C 1.52998 * 109.46920 * 270.00456 * 6 5 4 9 9 C 1.50697 * 109.47503 * 149.99993 * 6 5 4 10 10 O 1.21284 * 119.99565 * 4.99942 * 9 6 5 11 11 N 1.34772 * 120.00241 * 184.99909 * 9 6 5 12 12 C 1.39120 * 120.00284 * 175.81147 * 11 9 6 13 13 C 1.38642 * 120.28254 * 34.55403 * 12 11 9 14 14 C 1.38228 * 120.03170 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.61773 * 0.04320 * 14 13 12 16 16 C 1.36467 * 120.57745 * 0.02562 * 15 14 13 17 17 C 1.40738 * 119.94019 * 359.65137 * 16 15 14 18 18 C 1.41069 * 120.30091 * 180.34885 * 17 16 15 19 19 H 1.07993 * 120.00246 * 214.98168 * 18 17 16 20 20 C 1.39959 * 120.00077 * 34.98364 * 18 17 16 21 21 N 1.30856 * 120.00091 * 355.64125 * 20 18 17 22 22 Si 1.86800 * 120.00267 * 175.64171 * 20 18 17 23 23 H 1.48506 * 109.47221 * 89.99981 * 22 20 18 24 24 H 1.48498 * 109.47289 * 209.99725 * 22 20 18 25 25 H 1.48500 * 109.46993 * 330.00006 * 22 20 18 26 26 H 1.08999 * 109.46984 * 299.99713 * 1 2 3 27 27 H 1.08993 * 109.47099 * 60.00135 * 1 2 3 28 28 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47094 * 239.99802 * 2 1 3 30 30 H 1.09003 * 109.46948 * 119.99870 * 2 1 3 31 31 H 1.08999 * 109.47082 * 60.00346 * 3 2 1 32 32 H 1.08993 * 109.47148 * 299.99835 * 3 2 1 33 33 H 1.09008 * 109.46737 * 60.00266 * 4 3 2 34 34 H 1.08993 * 109.47458 * 300.00054 * 4 3 2 35 35 H 1.09001 * 109.46989 * 299.99800 * 8 6 5 36 36 H 1.08998 * 109.47000 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.47463 * 59.99785 * 8 6 5 38 38 H 0.97003 * 119.99778 * 355.81669 * 11 9 6 39 39 H 1.08005 * 119.98563 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.68981 * 180.02562 * 14 13 12 41 41 H 1.07995 * 119.71498 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.02844 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00124 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9027 0.0000 7 1 5.9033 2.0439 -0.5134 8 6 5.9792 2.9435 1.4425 9 6 5.8745 4.1686 -0.7109 10 8 5.0260 4.9468 -1.0923 11 7 7.1783 4.4360 -0.9230 12 6 7.5478 5.5599 -1.6550 13 6 6.8010 6.7250 -1.5719 14 6 7.1732 7.8388 -2.3011 15 6 8.2926 7.8049 -3.1221 16 6 9.0448 6.6709 -3.2238 17 6 8.6916 5.5252 -2.4867 18 6 9.4680 4.3511 -2.5805 19 1 8.9917 3.3832 -2.5298 20 6 10.8557 4.4407 -2.7392 21 7 11.4233 5.6105 -2.8862 22 14 11.8976 2.8902 -2.7412 23 1 12.0215 2.3788 -4.1299 24 1 13.2476 3.2003 -2.2058 25 1 11.2521 1.8590 -1.8897 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 5.5467 3.8022 1.9560 36 1 7.0658 3.0301 1.4425 37 1 5.6873 2.0278 1.9567 38 1 7.8591 3.8448 -0.5653 39 1 5.9285 6.7628 -0.9364 40 1 6.5877 8.7437 -2.2319 41 1 8.5699 8.6834 -3.6857 42 1 9.9135 6.6542 -3.8654 43 1 12.3850 5.6725 -2.9966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339176411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = -81.284842 kcal Electronic energy + Delta-G solvation = -22891.142064 eV Core-core repulsion = 19514.461329 eV Total energy + Delta-G solvation = -3376.680736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79981 -38.14012 -36.92398 -35.13009 -33.79764 -33.61888 -31.55569 -29.58241 -29.02663 -28.21889 -25.33521 -24.38275 -23.23450 -21.53967 -21.29335 -20.65225 -19.25495 -17.49919 -16.94917 -16.82822 -16.19699 -15.66224 -15.26689 -14.87462 -14.54070 -14.24821 -14.05633 -13.70150 -13.28977 -13.18148 -12.79321 -12.60914 -12.37588 -12.27829 -12.25144 -11.81360 -11.74324 -11.39808 -11.29642 -11.21597 -11.19911 -10.97558 -10.89385 -10.81081 -10.47620 -10.07781 -9.79117 -9.72380 -9.28720 -9.12082 -8.71167 -7.30166 -6.95841 -6.62680 -4.45449 2.61129 2.87649 3.03047 3.04436 3.18864 3.23067 3.44569 3.89320 4.17455 4.65462 4.71426 4.81123 4.88901 4.94112 5.05534 5.15913 5.23324 5.27870 5.41547 5.53035 5.60402 5.62207 5.62447 5.71640 5.73404 5.89938 6.04463 6.11741 6.12639 6.33529 6.52885 6.58481 6.93873 7.07177 7.12933 7.24397 7.29162 7.67353 7.73005 8.00861 8.09879 8.12935 8.42365 8.57458 8.83235 8.85414 9.04211 10.22361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.003723 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.479393 B = 7518.081394 C = 8676.022113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.357 6.357 6 C 0.073 3.927 7 H 0.084 0.916 8 C -0.170 4.170 9 C 0.499 3.501 10 O -0.519 6.519 11 N -0.636 5.636 12 C 0.025 3.975 13 C -0.094 4.094 14 C -0.215 4.215 15 C -0.120 4.120 16 C -0.139 4.139 17 C 0.096 3.904 18 C -0.471 4.471 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.808 5.808 22 Si 0.913 3.087 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -10.641 6.668 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.018 4.018 5 O -0.275 6.275 6 C 0.011 3.989 7 H 0.101 0.899 8 C -0.228 4.228 9 C 0.284 3.716 10 O -0.395 6.395 11 N -0.280 5.280 12 C -0.069 4.069 13 C -0.114 4.114 14 C -0.235 4.235 15 C -0.139 4.139 16 C -0.159 4.159 17 C 0.092 3.908 18 C -0.502 4.502 19 H 0.092 0.908 20 C -0.142 4.142 21 N -0.435 5.435 22 Si 0.738 3.262 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.238 0.762 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.658 -9.862 6.374 15.204 hybrid contribution 1.164 -1.177 0.173 1.664 sum -8.494 -11.039 6.547 15.391 Atomic orbital electron populations 1.21752 0.95472 1.01572 1.02107 1.21443 0.96209 0.96143 1.02128 1.21536 0.93408 0.97038 1.03659 1.22619 0.95282 0.83954 0.99980 1.88034 1.18775 1.25719 1.94938 1.21883 0.83216 0.97161 0.96600 0.89861 1.22234 1.01957 1.03305 0.95272 1.20279 0.83087 0.87520 0.80678 1.90663 1.50294 1.48359 1.50201 1.42793 1.06150 1.26626 1.52418 1.17830 1.02275 0.86247 1.00503 1.20680 0.99095 0.91585 1.00055 1.20387 1.00441 0.97647 1.05004 1.20548 0.95983 0.97678 0.99661 1.21181 1.00711 0.92829 1.01208 1.17463 0.90491 0.94374 0.88470 1.19272 0.91417 0.93486 1.45988 0.90818 1.25850 0.98695 0.97254 0.92447 1.69765 1.12240 1.24526 1.36938 0.86237 0.78992 0.81651 0.79311 1.19539 1.20286 1.18804 0.92632 0.92528 0.92720 0.91830 0.91936 0.91094 0.90878 0.93314 0.93407 0.91128 0.90722 0.91613 0.76195 0.87213 0.89112 0.89280 0.85156 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 4 C 0.06 0.68 5.75 37.16 0.21 0.89 16 5 O -0.36 -5.65 9.53 -55.09 -0.52 -6.17 16 6 C 0.07 1.10 3.13 -27.89 -0.09 1.01 16 7 H 0.08 1.07 7.79 -51.93 -0.40 0.67 16 8 C -0.17 -2.06 9.47 37.16 0.35 -1.70 16 9 C 0.50 9.95 7.02 -10.99 -0.08 9.87 16 10 O -0.52 -12.44 13.92 -14.31 -0.20 -12.64 16 11 N -0.64 -13.07 4.92 -9.48 -0.05 -13.12 16 12 C 0.02 0.61 6.34 -83.18 -0.53 0.08 16 13 C -0.09 -2.31 8.69 -39.44 -0.34 -2.65 16 14 C -0.21 -5.08 10.04 -39.36 -0.39 -5.48 16 15 C -0.12 -2.87 9.97 -39.99 -0.40 -3.27 16 16 C -0.14 -3.60 8.61 -39.28 -0.34 -3.94 16 17 C 0.10 2.48 5.56 -106.65 -0.59 1.88 16 18 C -0.47 -11.72 8.22 -37.86 -0.31 -12.03 16 19 H 0.07 1.74 7.63 -52.49 -0.40 1.34 16 20 C 0.07 1.75 5.42 -17.32 -0.09 1.66 16 21 N -0.81 -20.19 10.62 55.55 0.59 -19.60 16 22 Si 0.91 17.88 29.56 -169.99 -5.03 12.85 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.53 8.08 -51.92 -0.42 0.11 16 34 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 37 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.40 7.29 7.74 -40.82 -0.32 6.98 16 39 H 0.11 2.69 6.20 -52.48 -0.33 2.37 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.13 3.46 6.16 -52.49 -0.32 3.13 16 43 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -30.01 356.19 -9.15 -39.16 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.77 Total: 11.06 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.54 Total: -16.91 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.54 Total: -32.72 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.72 Total: -18.81 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.01 -9.15 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339176411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.123 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds