Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.53009 * 109.46823 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46857 * 179.97438 * 4 3 2 6 6 C 1.42904 * 114.00034 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46603 * 29.99613 * 6 5 4 8 8 C 1.52998 * 109.46920 * 270.00456 * 6 5 4 9 9 C 1.50697 * 109.47503 * 149.99993 * 6 5 4 10 10 O 1.21284 * 119.99565 * 4.99942 * 9 6 5 11 11 N 1.34772 * 120.00241 * 184.99909 * 9 6 5 12 12 C 1.39120 * 120.00284 * 175.81147 * 11 9 6 13 13 C 1.38642 * 120.28254 * 34.55403 * 12 11 9 14 14 C 1.38228 * 120.03170 * 179.97438 * 13 12 11 15 15 C 1.38857 * 120.61773 * 0.04320 * 14 13 12 16 16 C 1.36467 * 120.57745 * 0.02562 * 15 14 13 17 17 C 1.40738 * 119.94019 * 359.65137 * 16 15 14 18 18 C 1.41069 * 120.30091 * 180.34885 * 17 16 15 19 19 H 1.07993 * 120.00246 * 214.98168 * 18 17 16 20 20 C 1.39959 * 120.00077 * 34.98364 * 18 17 16 21 21 N 1.30856 * 120.00091 * 355.64125 * 20 18 17 22 22 Si 1.86800 * 120.00267 * 175.64171 * 20 18 17 23 23 H 1.48506 * 109.47221 * 89.99981 * 22 20 18 24 24 H 1.48498 * 109.47289 * 209.99725 * 22 20 18 25 25 H 1.48500 * 109.46993 * 330.00006 * 22 20 18 26 26 H 1.08999 * 109.46984 * 299.99713 * 1 2 3 27 27 H 1.08993 * 109.47099 * 60.00135 * 1 2 3 28 28 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47094 * 239.99802 * 2 1 3 30 30 H 1.09003 * 109.46948 * 119.99870 * 2 1 3 31 31 H 1.08999 * 109.47082 * 60.00346 * 3 2 1 32 32 H 1.08993 * 109.47148 * 299.99835 * 3 2 1 33 33 H 1.09008 * 109.46737 * 60.00266 * 4 3 2 34 34 H 1.08993 * 109.47458 * 300.00054 * 4 3 2 35 35 H 1.09001 * 109.46989 * 299.99800 * 8 6 5 36 36 H 1.08998 * 109.47000 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.47463 * 59.99785 * 8 6 5 38 38 H 0.97003 * 119.99778 * 355.81669 * 11 9 6 39 39 H 1.08005 * 119.98563 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.68981 * 180.02562 * 14 13 12 41 41 H 1.07995 * 119.71498 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.02844 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00124 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9027 0.0000 7 1 5.9033 2.0439 -0.5134 8 6 5.9792 2.9435 1.4425 9 6 5.8745 4.1686 -0.7109 10 8 5.0260 4.9468 -1.0923 11 7 7.1783 4.4360 -0.9230 12 6 7.5478 5.5599 -1.6550 13 6 6.8010 6.7250 -1.5719 14 6 7.1732 7.8388 -2.3011 15 6 8.2926 7.8049 -3.1221 16 6 9.0448 6.6709 -3.2238 17 6 8.6916 5.5252 -2.4867 18 6 9.4680 4.3511 -2.5805 19 1 8.9917 3.3832 -2.5298 20 6 10.8557 4.4407 -2.7392 21 7 11.4233 5.6105 -2.8862 22 14 11.8976 2.8902 -2.7412 23 1 12.0215 2.3788 -4.1299 24 1 13.2476 3.2003 -2.2058 25 1 11.2521 1.8590 -1.8897 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 5.5467 3.8022 1.9560 36 1 7.0658 3.0301 1.4425 37 1 5.6873 2.0278 1.9567 38 1 7.8591 3.8448 -0.5653 39 1 5.9285 6.7628 -0.9364 40 1 6.5877 8.7437 -2.2319 41 1 8.5699 8.6834 -3.6857 42 1 9.9135 6.6542 -3.8654 43 1 12.3850 5.6725 -2.9966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339176411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = -97.051063 kcal Electronic energy + Delta-G solvation = -22891.825739 eV Core-core repulsion = 19514.461329 eV Total energy + Delta-G solvation = -3377.364411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37602 -39.53260 -38.50658 -35.92895 -35.52510 -35.46551 -32.70026 -31.46728 -30.14823 -29.66194 -27.15573 -25.60247 -24.17487 -23.24159 -22.45695 -22.01972 -20.89174 -19.27453 -18.57002 -18.11513 -17.36805 -17.04808 -16.78995 -16.23671 -15.92698 -15.74497 -15.36087 -14.78893 -14.70099 -14.42972 -14.22076 -14.13426 -13.75424 -13.57493 -13.27603 -13.14644 -12.99137 -12.84037 -12.72870 -12.67145 -12.28542 -12.10293 -11.96380 -11.91997 -11.79108 -11.60421 -11.53270 -11.07085 -10.96435 -10.77322 -10.32035 -9.24286 -8.81064 -8.44470 -6.36083 0.81908 1.06170 1.44298 1.53091 1.58099 1.74809 2.00743 2.25146 2.81761 2.95470 3.66589 3.71767 3.90972 3.96933 4.04083 4.15088 4.21816 4.41667 4.44074 4.49035 4.61618 4.66396 4.70919 4.74607 4.79075 4.91318 4.95578 5.04386 5.10982 5.17088 5.21479 5.24307 5.34770 5.35381 5.43796 5.44982 5.78541 5.86266 6.07709 6.16294 6.21553 6.27650 6.66012 6.75056 6.96571 7.01425 7.38013 8.43475 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.003723 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.479393 B = 7518.081394 C = 8676.022113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.052 3.948 5 O -0.388 6.388 6 C 0.081 3.919 7 H 0.111 0.889 8 C -0.163 4.163 9 C 0.494 3.506 10 O -0.566 6.566 11 N -0.631 5.631 12 C 0.019 3.981 13 C -0.110 4.110 14 C -0.220 4.220 15 C -0.123 4.123 16 C -0.164 4.164 17 C 0.068 3.932 18 C -0.489 4.489 19 H 0.082 0.918 20 C 0.031 3.969 21 N -0.838 5.838 22 Si 0.987 3.013 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.248 1.248 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.414 0.586 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -13.173 7.737 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.024 4.024 5 O -0.308 6.308 6 C 0.020 3.980 7 H 0.128 0.872 8 C -0.221 4.221 9 C 0.282 3.718 10 O -0.445 6.445 11 N -0.276 5.276 12 C -0.076 4.076 13 C -0.130 4.130 14 C -0.240 4.240 15 C -0.142 4.142 16 C -0.184 4.184 17 C 0.065 3.935 18 C -0.520 4.520 19 H 0.100 0.900 20 C -0.181 4.181 21 N -0.465 5.465 22 Si 0.808 3.192 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.172 1.172 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.252 0.748 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.332 -12.413 7.462 17.230 hybrid contribution 0.998 -0.337 -0.179 1.068 sum -8.334 -12.750 7.283 16.884 Atomic orbital electron populations 1.21768 0.95087 1.02319 1.01860 1.21420 0.96521 0.94448 1.02978 1.21555 0.92937 0.98516 1.02544 1.22886 0.95751 0.82264 1.01488 1.88006 1.19078 1.28499 1.95172 1.21887 0.83473 0.94732 0.97915 0.87181 1.22228 1.02445 1.04320 0.93107 1.21301 0.82085 0.88713 0.79726 1.90630 1.51351 1.50389 1.52119 1.42780 1.07053 1.25827 1.51904 1.17975 1.01748 0.87432 1.00438 1.20829 0.99192 0.92311 1.00647 1.20685 1.00505 0.98345 1.04455 1.20780 0.95685 0.98010 0.99712 1.21222 1.01114 0.94042 1.02014 1.17810 0.91403 0.95132 0.89176 1.19510 0.92224 0.93433 1.46797 0.90008 1.26764 0.99501 1.00527 0.91357 1.69852 1.12903 1.26739 1.37041 0.85112 0.77052 0.77620 0.79396 1.19442 1.19914 1.17163 0.92568 0.93175 0.91455 0.91452 0.90540 0.91487 0.92795 0.92719 0.90781 0.92592 0.89613 0.88419 0.74825 0.87693 0.86751 0.86889 0.86477 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.61 5.93 30.59 0.18 -1.43 16 3 C -0.12 -2.30 5.58 30.60 0.17 -2.13 16 4 C 0.05 1.09 5.75 71.99 0.41 1.51 16 5 O -0.39 -11.87 9.53 -129.99 -1.24 -13.11 16 6 C 0.08 2.29 3.13 29.85 0.09 2.38 16 7 H 0.11 2.51 7.79 -2.39 -0.02 2.49 16 8 C -0.16 -3.53 9.47 71.98 0.68 -2.85 16 9 C 0.49 19.65 7.02 87.66 0.62 20.27 16 10 O -0.57 -27.74 13.92 15.95 0.22 -27.52 16 11 N -0.63 -25.88 4.92 -302.30 -1.49 -27.37 16 12 C 0.02 0.92 6.34 38.88 0.25 1.17 16 13 C -0.11 -5.49 8.69 22.36 0.19 -5.29 16 14 C -0.22 -10.48 10.04 22.42 0.22 -10.26 16 15 C -0.12 -5.95 9.97 22.00 0.22 -5.73 16 16 C -0.16 -8.67 8.61 22.47 0.19 -8.48 16 17 C 0.07 3.61 5.56 -21.18 -0.12 3.49 16 18 C -0.49 -24.38 8.22 23.38 0.19 -24.18 16 19 H 0.08 3.81 7.63 -2.91 -0.02 3.79 16 20 C 0.03 1.49 5.42 85.26 0.46 1.95 16 21 N -0.84 -42.19 10.62 21.83 0.23 -41.95 16 22 Si 0.99 35.60 29.56 68.60 2.03 37.62 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 24 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.07 8.08 -2.38 -0.02 1.05 16 34 H 0.07 1.17 7.87 -2.39 -0.02 1.15 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.66 7.79 -2.39 -0.02 1.64 16 37 H 0.10 1.51 7.87 -2.39 -0.02 1.49 16 38 H 0.41 14.66 7.74 -92.71 -0.72 13.94 16 39 H 0.11 5.30 6.20 -2.91 -0.02 5.29 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 42 H 0.12 6.42 6.16 -2.91 -0.02 6.40 16 43 H 0.28 13.08 8.30 -92.71 -0.77 12.31 16 Total: -1.00 -66.43 356.19 4.52 -61.91 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: 0.28 Total: 41.27 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.49 Total: -30.86 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.26 Total: -69.32 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.02 Total: -40.62 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.62 kcal Total: -66.43 4.52 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339176411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.142 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds