Wall clock time and date at job start Tue Mar 31 2020 07:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 H 1.08998 * 109.47338 * 55.00103 * 3 2 1 5 5 O 1.42897 * 109.47092 * 294.99440 * 3 2 1 6 6 C 1.53005 * 109.46769 * 174.99716 * 3 2 1 7 7 C 1.53008 * 109.46917 * 184.99609 * 6 3 2 8 8 C 1.52995 * 109.47299 * 180.02562 * 7 6 3 9 9 N 1.46500 * 109.47426 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00079 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00043 * 359.97438 * 10 9 8 12 12 C 1.47643 * 119.99887 * 179.97438 * 10 9 8 13 13 C 1.40010 * 119.89361 * 359.72910 * 12 10 9 14 14 C 1.36315 * 120.10617 * 179.75349 * 13 12 10 15 15 C 1.40892 * 119.88784 * 0.51644 * 14 13 12 16 16 C 1.41115 * 120.10066 * 179.71416 * 15 14 13 17 17 H 1.07998 * 119.99486 * 204.64648 * 16 15 14 18 18 C 1.40227 * 119.99936 * 24.64767 * 16 15 14 19 19 N 1.30643 * 120.00287 * 17.87938 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 197.87012 * 18 16 15 21 21 H 1.48494 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46827 * 120.00486 * 20 18 16 23 23 H 1.48497 * 109.47203 * 240.00082 * 20 18 16 24 24 C 1.40886 * 119.79617 * 359.73914 * 15 14 13 25 25 C 1.36316 * 119.88795 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.47095 * 60.00571 * 1 2 3 27 27 H 1.09005 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47855 * 300.00139 * 1 2 3 29 29 H 1.08991 * 109.47335 * 239.99688 * 2 1 3 30 30 H 1.09008 * 109.47149 * 119.99374 * 2 1 3 31 31 H 0.96700 * 114.00027 * 300.00646 * 5 3 2 32 32 H 1.08993 * 109.47207 * 304.99452 * 6 3 2 33 33 H 1.09000 * 109.47250 * 65.00202 * 6 3 2 34 34 H 1.09003 * 109.47227 * 300.00458 * 7 6 3 35 35 H 1.09000 * 109.46677 * 60.00241 * 7 6 3 36 36 H 1.09006 * 109.46816 * 300.00579 * 8 7 6 37 37 H 1.08996 * 109.47089 * 59.99681 * 8 7 6 38 38 H 0.97001 * 119.99343 * 359.97438 * 9 8 7 39 39 H 1.08003 * 119.94636 * 0.02562 * 13 12 10 40 40 H 1.07998 * 120.05763 * 180.23130 * 14 13 12 41 41 H 0.96999 * 120.00365 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.05798 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.94203 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1258 7 6 4.0644 2.8851 0.2511 8 6 5.5892 2.8871 0.3763 9 7 6.0676 4.2665 0.4969 10 6 7.3868 4.5141 0.6191 11 8 8.1798 3.5925 0.6298 12 6 7.8689 5.9043 0.7401 13 6 6.9542 6.9641 0.7218 14 6 7.3941 8.2491 0.8383 15 6 8.7727 8.5103 0.9662 16 6 9.2335 9.8392 1.0809 17 1 10.2421 10.0882 0.7859 18 6 8.3819 10.8361 1.5781 19 7 7.3123 10.5055 2.2515 20 14 8.7769 12.6370 1.2777 21 1 10.0340 12.7441 0.4945 22 1 7.6665 13.2675 0.5195 23 1 8.9438 13.3311 2.5798 24 6 9.6897 7.4409 0.9786 25 6 9.2397 6.1589 0.8675 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0141 1.6541 -2.0139 32 1 3.8569 0.8802 1.0114 33 1 4.0029 0.9836 -0.7595 34 1 3.7721 3.4494 -0.6345 35 1 3.6262 3.3459 1.1365 36 1 5.8818 2.3226 1.2617 37 1 6.0270 2.4264 -0.5092 38 1 5.4349 5.0017 0.4880 39 1 5.8980 6.7630 0.6198 40 1 6.6875 9.0658 0.8278 41 1 6.7234 11.1952 2.5957 42 1 10.7473 7.6363 1.0761 43 1 9.9419 5.3384 0.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340174225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:18 Heat of formation + Delta-G solvation = -104.892431 kcal Electronic energy + Delta-G solvation = -21918.805024 eV Core-core repulsion = 18541.100586 eV Total energy + Delta-G solvation = -3377.704438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.14708 -38.47935 -37.12412 -35.12205 -33.86214 -33.20666 -32.25243 -30.18986 -29.43440 -27.84455 -25.85443 -23.96886 -21.91657 -21.60759 -21.40983 -20.81671 -19.48575 -17.52316 -16.78774 -16.67628 -16.33352 -15.59513 -15.35250 -15.23410 -14.74600 -14.03908 -13.98015 -13.70412 -13.41512 -13.25394 -12.93999 -12.74151 -12.46673 -12.13245 -12.10710 -11.91894 -11.78836 -11.59632 -11.35924 -11.32395 -11.27039 -10.96616 -10.95326 -10.85806 -10.63291 -10.11417 -10.02780 -9.55948 -9.34550 -8.94598 -8.56553 -7.71292 -7.53416 -7.03233 -4.59591 2.24144 2.90858 2.95463 3.01063 3.04464 3.74368 3.76481 3.88643 4.10876 4.39614 4.57661 4.63299 4.70491 4.86825 5.02322 5.11870 5.28134 5.37525 5.46887 5.54862 5.59181 5.61478 5.63438 5.74959 5.87881 5.92022 6.01222 6.06345 6.14570 6.26865 6.32874 6.77584 6.83350 6.96287 7.07907 7.14400 7.38549 7.44515 7.66459 7.80356 7.86946 8.07795 8.26913 8.40697 8.63794 8.76083 9.10152 9.88842 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002496 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.591828 B =11215.310069 C =12172.507131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.560 6.560 6 C -0.148 4.148 7 C -0.128 4.128 8 C 0.124 3.876 9 N -0.743 5.743 10 C 0.571 3.429 11 O -0.578 6.578 12 C -0.284 4.284 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.239 4.239 25 C -0.023 4.023 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.373 0.627 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -11.773 -3.446 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.365 6.365 6 C -0.186 4.186 7 C -0.166 4.166 8 C -0.001 4.001 9 N -0.396 5.396 10 C 0.365 3.635 11 O -0.460 6.460 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.124 3.876 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.258 4.258 25 C -0.042 4.042 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.790 -11.938 -2.880 17.024 hybrid contribution 0.043 0.710 -0.277 0.763 sum -11.747 -11.228 -3.156 16.554 Atomic orbital electron populations 1.21709 0.95207 1.01348 1.02429 1.22256 0.97076 0.97416 1.02750 1.22007 0.93151 0.92463 0.87788 0.88373 1.86594 1.76939 1.57326 1.15658 1.22230 0.95992 0.97312 1.03108 1.21734 0.94658 0.97014 1.03174 1.21177 0.93066 0.84429 1.01380 1.45915 1.08309 1.07884 1.77484 1.18598 0.80923 0.89696 0.74255 1.90624 1.55129 1.46942 1.53317 1.18910 0.94459 0.90329 1.25181 1.20480 0.96171 0.93338 0.98210 1.20977 0.96435 0.95136 1.07201 1.17803 0.91782 0.92635 0.85352 1.19875 0.99661 0.92296 1.35154 0.89675 1.26106 0.93895 1.02433 0.92305 1.69750 1.10891 1.36719 1.22139 0.86172 0.80124 0.80748 0.79303 1.18061 1.19381 1.19684 1.20713 0.98383 0.92216 1.14503 1.20365 0.93604 0.96028 0.94193 0.92085 0.92975 0.92743 0.91689 0.91051 0.78025 0.90737 0.91332 0.90667 0.91367 0.92343 0.92339 0.76744 0.89312 0.86183 0.90288 0.88382 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.62 16 2 C -0.16 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.10 0.81 2.97 -26.73 -0.08 0.73 16 4 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 5 O -0.56 -4.89 12.41 -35.23 -0.44 -5.32 16 6 C -0.15 -1.20 4.89 -26.72 -0.13 -1.33 16 7 C -0.13 -1.33 5.23 -26.73 -0.14 -1.47 16 8 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 9 N -0.74 -12.70 5.50 -61.32 -0.34 -13.04 16 10 C 0.57 12.44 7.76 -12.42 -0.10 12.34 16 11 O -0.58 -14.09 16.32 5.29 0.09 -14.01 16 12 C -0.28 -6.61 5.89 -104.73 -0.62 -7.23 16 13 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 14 C -0.18 -4.40 8.64 -39.27 -0.34 -4.74 16 15 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 16 C -0.44 -11.05 9.04 -37.74 -0.34 -11.40 16 17 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 18 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 19 N -0.77 -18.56 10.95 55.56 0.61 -17.95 16 20 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 25 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 26 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.37 2.08 9.05 45.56 0.41 2.49 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 6.11 6.47 -40.82 -0.26 5.85 16 39 H 0.09 1.69 6.37 -52.48 -0.33 1.36 16 40 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 41 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -29.62 358.06 -9.01 -38.62 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.92 Total: 11.80 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.37 Total: -17.78 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.27 Total: -30.99 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.35 Total: -19.33 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.62 -9.01 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340174225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.268 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds