Wall clock time and date at job start Tue Mar 31 2020 07:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 H 1.08998 * 109.47338 * 55.00103 * 3 2 1 5 5 O 1.42897 * 109.47092 * 294.99440 * 3 2 1 6 6 C 1.53005 * 109.46769 * 174.99716 * 3 2 1 7 7 C 1.53008 * 109.46917 * 184.99609 * 6 3 2 8 8 C 1.52995 * 109.47299 * 180.02562 * 7 6 3 9 9 N 1.46500 * 109.47426 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00079 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00043 * 359.97438 * 10 9 8 12 12 C 1.47643 * 119.99887 * 179.97438 * 10 9 8 13 13 C 1.40010 * 119.89361 * 359.72910 * 12 10 9 14 14 C 1.36315 * 120.10617 * 179.75349 * 13 12 10 15 15 C 1.40892 * 119.88784 * 0.51644 * 14 13 12 16 16 C 1.41115 * 120.10066 * 179.71416 * 15 14 13 17 17 H 1.07998 * 119.99486 * 204.64648 * 16 15 14 18 18 C 1.40227 * 119.99936 * 24.64767 * 16 15 14 19 19 N 1.30643 * 120.00287 * 17.87938 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 197.87012 * 18 16 15 21 21 H 1.48494 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46827 * 120.00486 * 20 18 16 23 23 H 1.48497 * 109.47203 * 240.00082 * 20 18 16 24 24 C 1.40886 * 119.79617 * 359.73914 * 15 14 13 25 25 C 1.36316 * 119.88795 * 359.97438 * 24 15 14 26 26 H 1.08998 * 109.47095 * 60.00571 * 1 2 3 27 27 H 1.09005 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47855 * 300.00139 * 1 2 3 29 29 H 1.08991 * 109.47335 * 239.99688 * 2 1 3 30 30 H 1.09008 * 109.47149 * 119.99374 * 2 1 3 31 31 H 0.96700 * 114.00027 * 300.00646 * 5 3 2 32 32 H 1.08993 * 109.47207 * 304.99452 * 6 3 2 33 33 H 1.09000 * 109.47250 * 65.00202 * 6 3 2 34 34 H 1.09003 * 109.47227 * 300.00458 * 7 6 3 35 35 H 1.09000 * 109.46677 * 60.00241 * 7 6 3 36 36 H 1.09006 * 109.46816 * 300.00579 * 8 7 6 37 37 H 1.08996 * 109.47089 * 59.99681 * 8 7 6 38 38 H 0.97001 * 119.99343 * 359.97438 * 9 8 7 39 39 H 1.08003 * 119.94636 * 0.02562 * 13 12 10 40 40 H 1.07998 * 120.05763 * 180.23130 * 14 13 12 41 41 H 0.96999 * 120.00365 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.05798 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.94203 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1258 7 6 4.0644 2.8851 0.2511 8 6 5.5892 2.8871 0.3763 9 7 6.0676 4.2665 0.4969 10 6 7.3868 4.5141 0.6191 11 8 8.1798 3.5925 0.6298 12 6 7.8689 5.9043 0.7401 13 6 6.9542 6.9641 0.7218 14 6 7.3941 8.2491 0.8383 15 6 8.7727 8.5103 0.9662 16 6 9.2335 9.8392 1.0809 17 1 10.2421 10.0882 0.7859 18 6 8.3819 10.8361 1.5781 19 7 7.3123 10.5055 2.2515 20 14 8.7769 12.6370 1.2777 21 1 10.0340 12.7441 0.4945 22 1 7.6665 13.2675 0.5195 23 1 8.9438 13.3311 2.5798 24 6 9.6897 7.4409 0.9786 25 6 9.2397 6.1589 0.8675 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0141 1.6541 -2.0139 32 1 3.8569 0.8802 1.0114 33 1 4.0029 0.9836 -0.7595 34 1 3.7721 3.4494 -0.6345 35 1 3.6262 3.3459 1.1365 36 1 5.8818 2.3226 1.2617 37 1 6.0270 2.4264 -0.5092 38 1 5.4349 5.0017 0.4880 39 1 5.8980 6.7630 0.6198 40 1 6.6875 9.0658 0.8278 41 1 6.7234 11.1952 2.5957 42 1 10.7473 7.6363 1.0761 43 1 9.9419 5.3384 0.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340174225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:17 Heat of formation + Delta-G solvation = -123.341557 kcal Electronic energy + Delta-G solvation = -21919.605038 eV Core-core repulsion = 18541.100586 eV Total energy + Delta-G solvation = -3378.504452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78784 -39.24200 -38.85288 -36.40053 -35.67509 -33.92906 -33.27864 -31.88924 -31.30076 -28.92848 -27.45724 -24.98052 -23.46295 -22.81699 -22.32507 -22.14990 -21.12321 -19.37300 -18.39757 -17.43630 -17.28105 -17.04368 -16.64908 -16.29598 -15.78776 -15.73157 -15.23825 -15.07130 -15.01372 -14.43347 -14.22950 -13.90246 -13.71918 -13.62794 -13.29628 -13.13905 -12.93855 -12.85715 -12.64588 -12.51329 -12.45531 -12.36403 -11.82539 -11.76440 -11.70039 -11.55467 -11.37937 -11.12913 -10.86180 -10.58560 -10.06805 -9.58091 -9.41035 -8.79982 -6.48648 0.43279 1.14378 1.38573 1.42275 1.55674 2.11709 2.17831 2.40482 2.78058 3.49689 3.68512 3.74248 3.96275 4.03871 4.18410 4.24224 4.30547 4.39042 4.40472 4.44420 4.52758 4.68143 4.77190 4.84333 4.91740 4.96735 4.99095 5.03014 5.13071 5.15476 5.17454 5.29158 5.32309 5.40376 5.42933 5.56613 5.61112 5.81931 5.94225 5.99100 6.22065 6.53510 6.70749 6.76657 6.88458 6.91786 7.43502 8.15494 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002496 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.591828 B =11215.310069 C =12172.507131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 C 0.108 3.892 4 H 0.091 0.909 5 O -0.577 6.577 6 C -0.142 4.142 7 C -0.117 4.117 8 C 0.122 3.878 9 N -0.727 5.727 10 C 0.569 3.431 11 O -0.608 6.608 12 C -0.295 4.295 13 C -0.054 4.054 14 C -0.198 4.198 15 C 0.100 3.900 16 C -0.472 4.472 17 H 0.085 0.915 18 C 0.037 3.963 19 N -0.798 5.798 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.264 1.264 24 C -0.252 4.252 25 C -0.034 4.034 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.385 0.615 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.407 0.593 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.104 0.896 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 -11.744 -3.704 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.191 4.191 3 C 0.049 3.951 4 H 0.109 0.891 5 O -0.385 6.385 6 C -0.181 4.181 7 C -0.154 4.154 8 C -0.001 4.001 9 N -0.379 5.379 10 C 0.363 3.637 11 O -0.493 6.493 12 C -0.299 4.299 13 C -0.073 4.073 14 C -0.217 4.217 15 C 0.096 3.904 16 C -0.499 4.499 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.272 4.272 25 C -0.053 4.053 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.244 0.756 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.232 -11.933 -3.145 18.094 hybrid contribution 0.434 0.617 -0.187 0.777 sum -12.798 -11.316 -3.332 17.405 Atomic orbital electron populations 1.21707 0.95447 1.01708 1.01865 1.22217 0.96801 0.96577 1.03506 1.21956 0.92610 0.93127 0.87358 0.89101 1.86562 1.77315 1.58082 1.16532 1.22196 0.96306 0.95697 1.03873 1.21654 0.91738 0.98782 1.03268 1.21388 0.95431 0.82307 1.01009 1.45823 1.06821 1.09805 1.75418 1.18433 0.82287 0.88655 0.74374 1.90603 1.56337 1.47438 1.54939 1.19196 0.94410 0.91636 1.24694 1.20731 0.97828 0.92254 0.96471 1.21017 0.96097 0.95905 1.08709 1.18164 0.92628 0.93422 0.86137 1.20136 1.00395 0.92955 1.36404 0.89652 1.26948 0.93398 1.06570 0.91315 1.69763 1.11567 1.38697 1.22098 0.85054 0.79950 0.74807 0.79372 1.18051 1.18410 1.18828 1.20852 0.98787 0.92395 1.15153 1.20521 0.94453 0.95916 0.94442 0.92867 0.92170 0.93094 0.90812 0.90408 0.76550 0.90085 0.90489 0.90722 0.91073 0.92765 0.92646 0.75587 0.85885 0.86772 0.89151 0.87744 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 71.98 0.71 -1.04 16 2 C -0.15 -1.64 5.61 30.59 0.17 -1.46 16 3 C 0.11 1.45 2.97 30.60 0.09 1.54 16 4 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 5 O -0.58 -9.01 12.41 -148.98 -1.85 -10.86 16 6 C -0.14 -1.98 4.89 30.60 0.15 -1.83 16 7 C -0.12 -2.18 5.23 30.60 0.16 -2.02 16 8 C 0.12 3.21 5.67 86.38 0.49 3.70 16 9 N -0.73 -23.77 5.50 -466.17 -2.57 -26.33 16 10 C 0.57 24.47 7.76 86.73 0.67 25.15 16 11 O -0.61 -29.61 16.32 -3.98 -0.06 -29.67 16 12 C -0.29 -13.70 5.89 -19.94 -0.12 -13.82 16 13 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 14 C -0.20 -9.86 8.64 22.47 0.19 -9.67 16 15 C 0.10 5.23 5.58 -21.28 -0.12 5.11 16 16 C -0.47 -23.94 9.04 23.46 0.21 -23.73 16 17 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 18 C 0.04 1.71 5.14 85.35 0.44 2.15 16 19 N -0.80 -38.20 10.95 21.87 0.24 -37.96 16 20 Si 0.99 34.82 29.60 68.60 2.03 36.85 16 21 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 24 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 25 C -0.03 -1.67 9.52 22.25 0.21 -1.45 16 26 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.39 3.55 9.05 -74.06 -0.67 2.88 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.44 7.82 -2.39 -0.02 1.42 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.41 11.66 6.47 -92.71 -0.60 11.06 16 39 H 0.12 4.46 6.37 -2.91 -0.02 4.44 16 40 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 41 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 42 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 Total: -1.00 -63.67 358.06 1.23 -62.44 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.25 Total: 37.56 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.69 Total: -32.02 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -2.33 Total: -64.29 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.91 Total: -40.54 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -63.67 1.23 -62.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340174225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.900 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds