Wall clock time and date at job start Tue Mar 31 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47478 * 2 1 4 4 H 1.08998 * 109.47580 * 305.00018 * 3 2 1 5 5 O 1.42904 * 109.47152 * 64.99678 * 3 2 1 6 6 C 1.52999 * 109.47523 * 184.99821 * 3 2 1 7 7 C 1.53000 * 109.47617 * 175.00014 * 6 3 2 8 8 C 1.52997 * 109.47256 * 179.97438 * 7 6 3 9 9 N 1.46499 * 109.46937 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00053 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00044 * 0.02562 * 10 9 8 12 12 C 1.47640 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.40012 * 119.89717 * 359.73140 * 12 10 9 14 14 C 1.36320 * 120.10767 * 179.75730 * 13 12 10 15 15 C 1.40884 * 119.89313 * 0.51431 * 14 13 12 16 16 C 1.41102 * 120.10823 * 179.71533 * 15 14 13 17 17 H 1.07997 * 120.00835 * 204.65382 * 16 15 14 18 18 C 1.40236 * 119.99779 * 24.65692 * 16 15 14 19 19 N 1.30641 * 119.99770 * 17.85652 * 18 16 15 20 20 Si 1.86795 * 119.99999 * 197.86420 * 18 16 15 21 21 H 1.48507 * 109.47120 * 59.99621 * 20 18 16 22 22 H 1.48500 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47097 * 299.99787 * 20 18 16 24 24 C 1.40900 * 119.79116 * 359.73844 * 15 14 13 25 25 C 1.36311 * 119.88944 * 0.02562 * 24 15 14 26 26 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46690 * 59.99564 * 1 2 3 28 28 H 1.08998 * 109.46690 * 299.99967 * 1 2 3 29 29 H 1.09003 * 109.47096 * 119.99802 * 2 1 3 30 30 H 1.09002 * 109.47374 * 239.99835 * 2 1 3 31 31 H 0.96707 * 113.99460 * 60.00549 * 5 3 2 32 32 H 1.09006 * 109.47220 * 295.00061 * 6 3 2 33 33 H 1.09003 * 109.47251 * 54.99618 * 6 3 2 34 34 H 1.09006 * 109.46863 * 300.00265 * 7 6 3 35 35 H 1.09003 * 109.47134 * 59.99531 * 7 6 3 36 36 H 1.08992 * 109.47515 * 299.99725 * 8 7 6 37 37 H 1.09005 * 109.47198 * 60.00485 * 8 7 6 38 38 H 0.97007 * 120.00166 * 0.02562 * 9 8 7 39 39 H 1.08003 * 119.94913 * 0.02562 * 13 12 10 40 40 H 1.08000 * 120.05348 * 180.22745 * 14 13 12 41 41 H 0.97000 * 120.00056 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.04833 * 179.97438 * 24 15 14 43 43 H 1.08004 * 119.94473 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1257 7 6 4.0647 2.8849 -0.2511 8 6 5.5895 2.8867 -0.3761 9 7 6.0679 4.2661 -0.4968 10 6 7.3871 4.5135 -0.6189 11 8 8.1801 3.5920 -0.6295 12 6 7.8692 5.9037 -0.7411 13 6 6.9536 6.9629 -0.7355 14 6 7.3944 8.2484 -0.8431 15 6 8.7729 8.5096 -0.9710 16 6 9.2337 9.8380 -1.0887 17 1 10.1789 10.0413 -1.5699 18 6 8.4642 10.8946 -0.5807 19 7 7.5204 10.6554 0.2904 20 14 8.7885 12.6440 -1.1496 21 1 8.5919 12.7311 -2.6190 22 1 7.8466 13.5686 -0.4690 23 1 10.1845 13.0230 -0.8136 24 6 9.6901 7.4400 -0.9815 25 6 9.2402 6.1583 -0.8685 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0142 1.6542 2.0139 32 1 4.0030 0.9835 0.7597 33 1 3.8572 0.8799 -1.0112 34 1 3.6265 3.3457 -1.1365 35 1 3.7724 3.4493 0.6345 36 1 6.0273 2.4261 0.5095 37 1 5.8822 2.3223 -1.2615 38 1 5.4353 5.0014 -0.4880 39 1 5.8967 6.7615 -0.6414 40 1 6.6877 9.0650 -0.8350 41 1 6.9884 11.3862 0.6421 42 1 10.7476 7.6354 -1.0797 43 1 9.9424 5.3377 -0.8768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340174228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:21 Heat of formation + Delta-G solvation = -104.898609 kcal Electronic energy + Delta-G solvation = -21920.215097 eV Core-core repulsion = 18542.510391 eV Total energy + Delta-G solvation = -3377.704706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.14497 -38.47646 -37.12199 -35.12035 -33.86117 -33.20428 -32.25147 -30.18838 -29.43232 -27.84367 -25.85259 -23.96807 -21.91472 -21.60533 -21.40861 -20.81506 -19.48371 -17.51925 -16.78510 -16.67348 -16.33087 -15.59511 -15.35817 -15.22643 -14.75053 -14.03212 -13.98171 -13.70407 -13.41354 -13.25465 -12.94287 -12.72323 -12.47203 -12.14760 -12.08620 -11.89893 -11.80708 -11.59517 -11.34816 -11.31999 -11.25630 -11.00284 -10.94515 -10.86591 -10.62676 -10.11254 -10.04925 -9.54907 -9.33951 -8.94408 -8.56415 -7.71122 -7.53338 -7.02871 -4.59533 2.24992 2.92859 2.94697 2.98804 3.04614 3.74125 3.76603 3.88993 4.11129 4.39716 4.57894 4.63369 4.70516 4.86833 5.02343 5.11927 5.28155 5.37571 5.46934 5.54904 5.59261 5.61366 5.63533 5.74907 5.87953 5.92032 6.01379 6.06480 6.14734 6.26992 6.33019 6.77710 6.83393 6.96458 7.08074 7.14625 7.38959 7.44361 7.66630 7.80479 7.86687 8.07905 8.27060 8.40539 8.63708 8.76259 9.10337 9.89157 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.002501 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.486558 B =11192.904494 C =12175.822085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.560 6.560 6 C -0.148 4.148 7 C -0.128 4.128 8 C 0.124 3.876 9 N -0.743 5.743 10 C 0.571 3.429 11 O -0.578 6.578 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.023 4.023 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.373 0.627 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 -11.940 0.237 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.365 6.365 6 C -0.186 4.186 7 C -0.166 4.166 8 C 0.000 4.000 9 N -0.396 5.396 10 C 0.365 3.635 11 O -0.460 6.460 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.258 4.258 25 C -0.042 4.042 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.040 -12.086 -0.021 17.060 hybrid contribution 0.059 0.707 0.224 0.744 sum -11.981 -11.379 0.204 16.525 Atomic orbital electron populations 1.21708 0.95207 1.01346 1.02427 1.22256 0.97075 0.97419 1.02749 1.22003 0.93145 0.92457 0.87801 0.88393 1.86598 1.76930 1.57327 1.15661 1.22229 0.95996 0.97310 1.03109 1.21733 0.94653 0.97018 1.03176 1.21177 0.93066 0.84425 1.01379 1.45916 1.08310 1.07884 1.77487 1.18598 0.80920 0.89698 0.74255 1.90624 1.55118 1.46944 1.53335 1.18910 0.94528 0.90314 1.25158 1.20481 0.96208 0.93294 0.98205 1.20975 0.96056 0.94951 1.07787 1.17789 0.91578 0.92690 0.85472 1.19812 1.05166 0.90708 1.31357 0.89748 1.26105 0.93548 1.02386 0.92687 1.69735 1.15530 1.35570 1.18652 0.86257 0.79583 0.80084 0.80312 1.18478 1.20058 1.18666 1.20714 0.98018 0.92447 1.14659 1.20366 0.93605 0.95984 0.94229 0.92973 0.92754 0.92077 0.91684 0.91060 0.78002 0.91322 0.90749 0.91395 0.90640 0.92331 0.92352 0.76744 0.89316 0.86187 0.90170 0.88389 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.62 16 2 C -0.16 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.10 0.81 2.97 -26.73 -0.08 0.73 16 4 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 5 O -0.56 -4.93 12.41 -35.23 -0.44 -5.37 16 6 C -0.15 -1.20 4.89 -26.73 -0.13 -1.33 16 7 C -0.13 -1.33 5.22 -26.73 -0.14 -1.47 16 8 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 9 N -0.74 -12.71 5.50 -61.32 -0.34 -13.05 16 10 C 0.57 12.44 7.76 -12.42 -0.10 12.35 16 11 O -0.58 -14.10 16.32 5.29 0.09 -14.02 16 12 C -0.28 -6.62 5.89 -104.73 -0.62 -7.24 16 13 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 14 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 15 C 0.13 3.29 5.58 -106.80 -0.60 2.69 16 16 C -0.44 -11.06 9.04 -37.75 -0.34 -11.41 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 18 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 19 N -0.77 -18.57 10.95 55.56 0.61 -17.96 16 20 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 24 C -0.24 -5.85 9.73 -39.27 -0.38 -6.23 16 25 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.37 2.13 9.05 45.56 0.41 2.54 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.40 6.11 6.47 -40.82 -0.26 5.85 16 39 H 0.09 1.69 6.37 -52.48 -0.33 1.36 16 40 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 41 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -29.58 358.06 -9.01 -38.59 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.92 Total: 11.91 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.37 Total: -17.79 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.27 Total: -31.01 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.35 Total: -19.39 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.58 -9.01 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340174228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.310 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds