Wall clock time and date at job start Tue Mar 31 2020 07:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47478 * 2 1 4 4 H 1.08998 * 109.47580 * 305.00018 * 3 2 1 5 5 O 1.42904 * 109.47152 * 64.99678 * 3 2 1 6 6 C 1.52999 * 109.47523 * 184.99821 * 3 2 1 7 7 C 1.53000 * 109.47617 * 175.00014 * 6 3 2 8 8 C 1.52997 * 109.47256 * 179.97438 * 7 6 3 9 9 N 1.46499 * 109.46937 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00053 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00044 * 0.02562 * 10 9 8 12 12 C 1.47640 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.40012 * 119.89717 * 359.73140 * 12 10 9 14 14 C 1.36320 * 120.10767 * 179.75730 * 13 12 10 15 15 C 1.40884 * 119.89313 * 0.51431 * 14 13 12 16 16 C 1.41102 * 120.10823 * 179.71533 * 15 14 13 17 17 H 1.07997 * 120.00835 * 204.65382 * 16 15 14 18 18 C 1.40236 * 119.99779 * 24.65692 * 16 15 14 19 19 N 1.30641 * 119.99770 * 17.85652 * 18 16 15 20 20 Si 1.86795 * 119.99999 * 197.86420 * 18 16 15 21 21 H 1.48507 * 109.47120 * 59.99621 * 20 18 16 22 22 H 1.48500 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47097 * 299.99787 * 20 18 16 24 24 C 1.40900 * 119.79116 * 359.73844 * 15 14 13 25 25 C 1.36311 * 119.88944 * 0.02562 * 24 15 14 26 26 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46690 * 59.99564 * 1 2 3 28 28 H 1.08998 * 109.46690 * 299.99967 * 1 2 3 29 29 H 1.09003 * 109.47096 * 119.99802 * 2 1 3 30 30 H 1.09002 * 109.47374 * 239.99835 * 2 1 3 31 31 H 0.96707 * 113.99460 * 60.00549 * 5 3 2 32 32 H 1.09006 * 109.47220 * 295.00061 * 6 3 2 33 33 H 1.09003 * 109.47251 * 54.99618 * 6 3 2 34 34 H 1.09006 * 109.46863 * 300.00265 * 7 6 3 35 35 H 1.09003 * 109.47134 * 59.99531 * 7 6 3 36 36 H 1.08992 * 109.47515 * 299.99725 * 8 7 6 37 37 H 1.09005 * 109.47198 * 60.00485 * 8 7 6 38 38 H 0.97007 * 120.00166 * 0.02562 * 9 8 7 39 39 H 1.08003 * 119.94913 * 0.02562 * 13 12 10 40 40 H 1.08000 * 120.05348 * 180.22745 * 14 13 12 41 41 H 0.97000 * 120.00056 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.04833 * 179.97438 * 24 15 14 43 43 H 1.08004 * 119.94473 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1257 7 6 4.0647 2.8849 -0.2511 8 6 5.5895 2.8867 -0.3761 9 7 6.0679 4.2661 -0.4968 10 6 7.3871 4.5135 -0.6189 11 8 8.1801 3.5920 -0.6295 12 6 7.8692 5.9037 -0.7411 13 6 6.9536 6.9629 -0.7355 14 6 7.3944 8.2484 -0.8431 15 6 8.7729 8.5096 -0.9710 16 6 9.2337 9.8380 -1.0887 17 1 10.1789 10.0413 -1.5699 18 6 8.4642 10.8946 -0.5807 19 7 7.5204 10.6554 0.2904 20 14 8.7885 12.6440 -1.1496 21 1 8.5919 12.7311 -2.6190 22 1 7.8466 13.5686 -0.4690 23 1 10.1845 13.0230 -0.8136 24 6 9.6901 7.4400 -0.9815 25 6 9.2402 6.1583 -0.8685 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.0142 1.6542 2.0139 32 1 4.0030 0.9835 0.7597 33 1 3.8572 0.8799 -1.0112 34 1 3.6265 3.3457 -1.1365 35 1 3.7724 3.4493 0.6345 36 1 6.0273 2.4261 0.5095 37 1 5.8822 2.3223 -1.2615 38 1 5.4353 5.0014 -0.4880 39 1 5.8967 6.7615 -0.6414 40 1 6.6877 9.0650 -0.8350 41 1 6.9884 11.3862 0.6421 42 1 10.7476 7.6354 -1.0797 43 1 9.9424 5.3377 -0.8768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340174228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:20 Heat of formation + Delta-G solvation = -123.317704 kcal Electronic energy + Delta-G solvation = -21921.013809 eV Core-core repulsion = 18542.510391 eV Total energy + Delta-G solvation = -3378.503418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78628 -39.24109 -38.85131 -36.39997 -35.67384 -33.92903 -33.27805 -31.88791 -31.29888 -28.92777 -27.45498 -24.97981 -23.46130 -22.81557 -22.32413 -22.14897 -21.12173 -19.36834 -18.39499 -17.43703 -17.27638 -17.04978 -16.64581 -16.29565 -15.79316 -15.72939 -15.23065 -15.06920 -15.01934 -14.42682 -14.22632 -13.89504 -13.68710 -13.67561 -13.26168 -13.14253 -12.96687 -12.85026 -12.63269 -12.52500 -12.44621 -12.35574 -11.82529 -11.79272 -11.69998 -11.55413 -11.37259 -11.12012 -10.86091 -10.58570 -10.06750 -9.57964 -9.40995 -8.79603 -6.48528 0.43779 1.14557 1.39020 1.44756 1.52495 2.11844 2.17981 2.40566 2.78453 3.49659 3.68659 3.74332 3.96336 4.03852 4.18466 4.24310 4.30665 4.39121 4.40485 4.44477 4.52878 4.68130 4.77220 4.84316 4.91834 4.96748 4.99130 5.02825 5.13116 5.15624 5.17479 5.29270 5.32369 5.40414 5.42952 5.56623 5.61163 5.82101 5.94309 5.99014 6.22197 6.53410 6.70794 6.76621 6.88628 6.91375 7.43598 8.15493 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.002501 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.486558 B =11192.904494 C =12175.822085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 C 0.108 3.892 4 H 0.092 0.908 5 O -0.578 6.578 6 C -0.143 4.143 7 C -0.117 4.117 8 C 0.122 3.878 9 N -0.727 5.727 10 C 0.569 3.431 11 O -0.608 6.608 12 C -0.295 4.295 13 C -0.054 4.054 14 C -0.198 4.198 15 C 0.100 3.900 16 C -0.472 4.472 17 H 0.086 0.914 18 C 0.037 3.963 19 N -0.798 5.798 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.253 4.253 25 C -0.034 4.034 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.385 0.615 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.105 0.895 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 -11.919 0.207 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.191 4.191 3 C 0.049 3.951 4 H 0.110 0.890 5 O -0.385 6.385 6 C -0.181 4.181 7 C -0.154 4.154 8 C -0.001 4.001 9 N -0.379 5.379 10 C 0.363 3.637 11 O -0.493 6.493 12 C -0.300 4.300 13 C -0.073 4.073 14 C -0.218 4.218 15 C 0.097 3.903 16 C -0.500 4.500 17 H 0.104 0.896 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.272 4.272 25 C -0.053 4.053 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.244 0.756 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.479 -12.088 -0.035 18.106 hybrid contribution 0.456 0.618 0.277 0.817 sum -13.023 -11.470 0.242 17.356 Atomic orbital electron populations 1.21706 0.95443 1.01708 1.01867 1.22217 0.96804 0.96576 1.03505 1.21961 0.92610 0.93133 0.87357 0.89030 1.86565 1.77313 1.58100 1.16553 1.22196 0.96305 0.95701 1.03873 1.21653 0.91740 0.98776 1.03272 1.21388 0.95423 0.82311 1.01007 1.45824 1.06822 1.09805 1.75420 1.18433 0.82284 0.88657 0.74375 1.90603 1.56327 1.47441 1.54958 1.19196 0.94483 0.91618 1.24679 1.20731 0.97876 0.92214 0.96458 1.21018 0.95706 0.95714 1.09327 1.18155 0.92411 0.93500 0.86271 1.20093 1.06055 0.91366 1.32441 0.89593 1.26952 0.92918 1.06246 0.92111 1.69756 1.15993 1.37399 1.18944 0.85143 0.79669 0.74626 0.79741 1.18213 1.18770 1.18265 1.20853 0.98422 0.92628 1.15300 1.20522 0.94453 0.95880 0.94480 0.92168 0.93051 0.92907 0.90869 0.90355 0.76569 0.90586 0.89993 0.90924 0.90867 0.92815 0.92602 0.75588 0.85892 0.86768 0.89131 0.87736 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 71.98 0.71 -1.03 16 2 C -0.15 -1.63 5.61 30.59 0.17 -1.46 16 3 C 0.11 1.45 2.97 30.59 0.09 1.54 16 4 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 5 O -0.58 -9.16 12.41 -148.98 -1.85 -11.00 16 6 C -0.14 -1.98 4.89 30.59 0.15 -1.83 16 7 C -0.12 -2.18 5.22 30.59 0.16 -2.02 16 8 C 0.12 3.21 5.67 86.38 0.49 3.70 16 9 N -0.73 -23.79 5.50 -466.17 -2.57 -26.36 16 10 C 0.57 24.49 7.76 86.73 0.67 25.16 16 11 O -0.61 -29.63 16.32 -3.98 -0.06 -29.70 16 12 C -0.30 -13.73 5.89 -19.93 -0.12 -13.85 16 13 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 14 C -0.20 -9.89 8.63 22.47 0.19 -9.69 16 15 C 0.10 5.24 5.58 -21.28 -0.12 5.12 16 16 C -0.47 -23.95 9.04 23.46 0.21 -23.73 16 17 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 18 C 0.04 1.72 5.14 85.36 0.44 2.15 16 19 N -0.80 -38.23 10.95 21.87 0.24 -37.99 16 20 Si 0.99 34.78 29.60 68.60 2.03 36.81 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 22 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 24 C -0.25 -12.69 9.73 22.47 0.22 -12.47 16 25 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.39 3.68 9.05 -74.05 -0.67 3.01 16 32 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.44 7.82 -2.39 -0.02 1.42 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.41 11.67 6.47 -92.70 -0.60 11.07 16 39 H 0.12 4.46 6.37 -2.91 -0.02 4.44 16 40 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 41 H 0.30 12.68 8.29 -92.71 -0.77 11.91 16 42 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.10 4.87 7.63 -2.91 -0.02 4.84 16 Total: -1.00 -63.61 358.06 1.23 -62.38 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.25 Total: 37.90 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 3.69 Total: -32.04 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -2.33 Total: -64.34 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.91 Total: -40.70 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -63.61 1.23 -62.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340174228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.937 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds