Wall clock time and date at job start Tue Mar 31 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 2 7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4 8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5 9 9 C 1.38011 * 120.21248 * 0.54935 * 8 7 6 10 10 C 1.39569 * 119.96027 * 359.72806 * 9 8 7 11 11 C 1.47857 * 120.11314 * 180.02562 * 10 9 8 12 12 O 1.21555 * 119.99905 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00336 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00285 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47438 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47420 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99979 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46764 * 90.00382 * 20 18 16 22 22 H 1.48500 * 109.47222 * 210.00158 * 20 18 16 23 23 H 1.48503 * 109.47145 * 330.00335 * 20 18 16 24 24 C 1.38445 * 119.98665 * 180.02562 * 6 5 4 25 25 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 27 27 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 29 29 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 30 30 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.07988 * 119.88252 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.89531 * 180.25450 * 8 7 6 36 36 H 1.07993 * 120.01945 * 179.74272 * 9 8 7 37 37 H 0.97009 * 120.00317 * 359.97438 * 13 11 10 38 38 H 1.08999 * 109.46861 * 300.00025 * 14 13 11 39 39 H 1.08999 * 109.47049 * 59.99707 * 14 13 11 40 40 H 1.09009 * 109.47227 * 299.99912 * 15 14 13 41 41 H 1.08999 * 109.47141 * 59.99884 * 15 14 13 42 42 H 0.97000 * 119.99536 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.10375 * 359.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0805 -1.4432 2.2331 7 6 3.3282 -1.9369 3.2907 8 6 3.9492 -2.5729 4.3494 9 6 5.3222 -2.7114 4.3676 10 6 6.0871 -2.2133 3.3118 11 6 7.5582 -2.3604 3.3276 12 8 8.2223 -1.9262 2.4067 13 7 8.1629 -2.9758 4.3629 14 6 9.6205 -3.1220 4.3783 15 6 10.0467 -3.8498 5.6548 16 6 11.5462 -3.9997 5.6709 17 1 12.1362 -3.6139 4.8526 18 6 12.1649 -4.6282 6.7306 19 7 11.4464 -5.0975 7.7272 20 14 14.0235 -4.8145 6.7502 21 1 14.6321 -3.6352 7.4164 22 1 14.3897 -6.0468 7.4936 23 1 14.5261 -4.9097 5.3560 24 6 5.4585 -1.5762 2.2415 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 2.2539 -1.8272 3.2842 35 1 3.3584 -2.9585 5.1672 36 1 5.8044 -3.2052 5.1982 37 1 7.6330 -3.3220 5.0981 38 1 9.9371 -3.6976 3.5085 39 1 10.0849 -2.1362 4.3502 40 1 9.7302 -3.2738 6.5244 41 1 9.5824 -4.8356 5.6832 42 1 11.8818 -5.5394 8.4729 43 1 6.0451 -1.1888 1.4216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342657266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:44 Heat of formation + Delta-G solvation = -94.780590 kcal Electronic energy + Delta-G solvation = -21881.504203 eV Core-core repulsion = 18504.238248 eV Total energy + Delta-G solvation = -3377.265955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52411 -40.52788 -38.42586 -36.68223 -36.14828 -34.87028 -32.52250 -31.74447 -30.63839 -28.06181 -27.59046 -26.95499 -24.67479 -23.47084 -22.83550 -21.69828 -20.98643 -19.64454 -18.53806 -17.68361 -17.21305 -17.16780 -16.88999 -16.52378 -16.43488 -16.37312 -15.35262 -14.99288 -14.94298 -14.85495 -14.68519 -14.28646 -14.09952 -13.67456 -13.34266 -13.25756 -13.01153 -12.94101 -12.81975 -12.54248 -12.31762 -12.26633 -12.16361 -12.02713 -11.70821 -11.59296 -11.52211 -11.47114 -11.01759 -10.60906 -10.24997 -9.96744 -9.29617 -8.24276 -6.34505 -0.25297 0.36540 1.42048 1.42431 1.53928 1.78745 1.95148 2.32916 2.46459 2.80162 3.10476 3.61478 3.73415 3.84529 3.89957 4.04747 4.09314 4.15802 4.24428 4.41887 4.44808 4.46410 4.53134 4.59046 4.67508 4.79632 4.82543 4.86860 4.98482 5.01821 5.15875 5.20899 5.22953 5.27820 5.33824 5.37757 5.39894 5.46140 5.56746 5.63493 5.77642 6.15219 6.39985 6.53038 6.77956 7.14201 7.34545 8.87516 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.046689 B = 0.002241 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.565541 B =12490.800195 C =12979.789086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.054 3.946 5 O -0.329 6.329 6 C 0.118 3.882 7 C -0.176 4.176 8 C -0.076 4.076 9 C -0.125 4.125 10 C -0.107 4.107 11 C 0.547 3.453 12 O -0.587 6.587 13 N -0.707 5.707 14 C 0.139 3.861 15 C 0.023 3.977 16 C -0.548 4.548 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.268 1.268 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.969 8.053 -9.565 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.020 4.020 5 O -0.243 6.243 6 C 0.072 3.928 7 C -0.194 4.194 8 C -0.094 4.094 9 C -0.143 4.143 10 C -0.110 4.110 11 C 0.336 3.664 12 O -0.469 6.469 13 N -0.358 5.358 14 C 0.015 3.985 15 C -0.015 4.015 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.138 4.138 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.182 0.818 35 H 0.188 0.812 36 H 0.163 0.837 37 H 0.249 0.751 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.388 8.343 -10.207 29.498 hybrid contribution 1.077 -0.346 0.474 1.227 sum -25.310 7.997 -9.733 28.272 Atomic orbital electron populations 1.21758 0.91940 1.02934 1.03206 1.21164 0.97162 0.96404 0.96688 1.21831 1.00711 0.95544 1.02487 1.23242 0.76836 1.01638 1.00334 1.86075 1.23645 1.73350 1.41271 1.18822 0.91225 0.94250 0.88483 1.21794 1.01724 1.01765 0.94142 1.21315 0.93467 0.96160 0.98437 1.21528 0.95154 1.00109 0.97559 1.19585 0.91339 1.02824 0.97234 1.18763 0.88410 0.77480 0.81768 1.90716 1.67363 1.51114 1.37666 1.46041 1.08763 1.57995 1.22997 1.21315 0.78226 0.99539 0.99404 1.19144 0.95852 0.94894 0.91564 1.21454 0.93021 1.38076 1.06071 0.92358 1.25858 1.03513 0.94784 0.94973 1.70049 1.37461 1.39158 1.09725 0.85443 0.79290 0.77834 0.78461 1.19778 1.20419 1.19197 1.20375 0.92601 1.01691 0.99164 0.91537 0.91179 0.91569 0.90912 0.92089 0.93915 0.91595 0.90543 0.90417 0.81837 0.81225 0.83746 0.75121 0.93310 0.93302 0.97044 0.97027 0.92504 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 71.98 0.66 -0.28 16 2 C -0.10 -1.09 3.16 -10.79 -0.03 -1.13 16 3 C -0.15 -1.90 9.09 71.98 0.65 -1.24 16 4 C 0.05 0.69 4.12 71.98 0.30 0.99 16 5 O -0.33 -7.09 9.67 -92.57 -0.89 -7.98 16 6 C 0.12 2.72 6.68 22.47 0.15 2.87 16 7 C -0.18 -2.90 9.03 22.42 0.20 -2.70 16 8 C -0.08 -1.23 10.03 22.22 0.22 -1.01 16 9 C -0.12 -2.77 9.54 22.54 0.21 -2.55 16 10 C -0.11 -3.19 5.87 -20.10 -0.12 -3.31 16 11 C 0.55 20.73 7.77 86.79 0.67 21.40 16 12 O -0.59 -26.85 16.35 -3.89 -0.06 -26.91 16 13 N -0.71 -26.14 5.51 -465.97 -2.57 -28.70 16 14 C 0.14 6.17 5.61 86.38 0.48 6.65 16 15 C 0.02 1.16 5.09 29.85 0.15 1.32 16 16 C -0.55 -30.86 9.11 25.60 0.23 -30.62 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.01 0.43 5.46 84.65 0.46 0.89 16 19 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 20 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.12 -3.49 9.53 22.63 0.22 -3.28 16 25 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.41 8.14 -2.38 -0.02 0.40 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.08 0.77 7.65 -2.39 -0.02 0.75 16 33 H 0.08 0.76 7.67 -2.39 -0.02 0.74 16 34 H 0.16 1.55 6.28 -2.92 -0.02 1.53 16 35 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.14 2.75 6.40 -2.91 -0.02 2.73 16 37 H 0.41 12.76 6.50 -92.70 -0.60 12.16 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.12 3.96 7.65 -2.91 -0.02 3.94 16 Total: -1.00 -71.09 360.44 3.65 -67.44 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.39 Total: 16.06 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.47 Total: -12.01 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.28 Total: -82.47 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.96 Total: -34.89 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.09 3.65 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342657266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.345 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds