Wall clock time and date at job start Tue Mar 31 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 H 1.09000 * 109.46972 * 304.99764 * 3 2 1 5 5 O 1.42894 * 109.46923 * 65.00043 * 3 2 1 6 6 C 1.53005 * 109.46946 * 185.00259 * 3 2 1 7 7 C 1.52993 * 109.47032 * 175.00512 * 6 3 2 8 8 C 1.53000 * 109.47167 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00104 * 179.97438 * 9 8 7 11 11 O 1.21546 * 119.99494 * 0.02562 * 10 9 8 12 12 C 1.47880 * 119.99645 * 180.02562 * 10 9 8 13 13 C 1.39922 * 120.03159 * 359.72546 * 12 10 9 14 14 C 1.38323 * 120.35784 * 179.73858 * 13 12 10 15 15 C 1.37747 * 120.41494 * 0.55987 * 14 13 12 16 16 C 1.40749 * 120.03885 * 359.69973 * 15 14 13 17 17 C 1.41442 * 120.17644 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99716 * 24.44004 * 17 16 15 19 19 C 1.39936 * 119.99948 * 204.43281 * 17 16 15 20 20 N 1.30832 * 119.99776 * 17.88315 * 19 17 16 21 21 Si 1.86796 * 120.00199 * 197.88146 * 19 17 16 22 22 H 1.48498 * 109.46992 * 60.00165 * 21 19 17 23 23 H 1.48505 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47299 * 300.00327 * 21 19 17 25 25 C 1.38996 * 120.02295 * 179.97438 * 12 10 9 26 26 H 1.09002 * 109.47226 * 300.00729 * 1 2 3 27 27 H 1.08992 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46789 * 59.99764 * 1 2 3 29 29 H 1.09004 * 109.47160 * 119.99875 * 2 1 3 30 30 H 1.09001 * 109.47161 * 240.00056 * 2 1 3 31 31 H 0.96697 * 114.00072 * 60.00154 * 5 3 2 32 32 H 1.09002 * 109.46808 * 294.99803 * 6 3 2 33 33 H 1.08996 * 109.47609 * 54.99780 * 6 3 2 34 34 H 1.09002 * 109.46746 * 299.99330 * 7 6 3 35 35 H 1.08998 * 109.48025 * 59.99341 * 7 6 3 36 36 H 1.08990 * 109.47131 * 299.99838 * 8 7 6 37 37 H 1.09007 * 109.46988 * 59.99820 * 8 7 6 38 38 H 0.96999 * 119.99665 * 0.02562 * 9 8 7 39 39 H 1.07997 * 119.81595 * 0.02562 * 13 12 10 40 40 H 1.08005 * 119.79117 * 180.28030 * 14 13 12 41 41 H 1.07998 * 119.98327 * 179.71707 * 15 14 13 42 42 H 0.97001 * 120.00198 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.20227 * 359.96088 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 6 4.0645 2.8849 -0.2511 8 6 5.5894 2.8868 -0.3762 9 7 6.0679 4.2662 -0.4968 10 6 7.3871 4.5137 -0.6190 11 8 8.1798 3.5923 -0.6297 12 6 7.8700 5.9061 -0.7402 13 6 6.9575 6.9668 -0.7337 14 6 7.4022 8.2722 -0.8412 15 6 8.7469 8.5427 -0.9673 16 6 9.6794 7.4885 -0.9812 17 6 11.0609 7.7630 -1.1100 18 1 11.4507 8.7242 -0.8096 19 6 11.9226 6.7889 -1.6267 20 7 11.4382 5.7809 -2.3058 21 14 13.7642 6.9277 -1.3468 22 1 14.0454 6.9183 0.1113 23 1 14.4508 5.7793 -1.9912 24 1 14.2607 8.1960 -1.9385 25 6 9.2304 6.1620 -0.8657 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.0141 1.6542 2.0138 32 1 4.0029 0.9836 0.7596 33 1 3.8571 0.8800 -1.0113 34 1 3.6265 3.3457 -1.1365 35 1 3.7724 3.4493 0.6345 36 1 6.0272 2.4261 0.5093 37 1 5.8820 2.3224 -1.2617 38 1 5.4352 5.0014 -0.4879 39 1 5.9006 6.7654 -0.6397 40 1 6.6901 9.0843 -0.8306 41 1 9.0860 9.5643 -1.0553 42 1 12.0355 5.1059 -2.6642 43 1 9.9382 5.3463 -0.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343610307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:26 Heat of formation + Delta-G solvation = -100.825071 kcal Electronic energy + Delta-G solvation = -22098.013547 eV Core-core repulsion = 18720.485483 eV Total energy + Delta-G solvation = -3377.528064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.23831 -38.50553 -37.02796 -35.17320 -33.74572 -33.21726 -32.26618 -30.15891 -29.42252 -27.73266 -25.32876 -24.26005 -22.21942 -21.64595 -21.41293 -20.85521 -19.40604 -17.68421 -16.73159 -16.38351 -16.16296 -15.47316 -15.31176 -15.13432 -14.78740 -14.50470 -14.03678 -13.63889 -13.45116 -13.24604 -12.95704 -12.65437 -12.49683 -12.43477 -12.15332 -11.82376 -11.68723 -11.60068 -11.33563 -11.15175 -11.08046 -10.97576 -10.89120 -10.73049 -10.49373 -10.13504 -10.01625 -9.68374 -9.20051 -8.99330 -8.62875 -7.61669 -7.51083 -6.79271 -4.40547 2.22933 2.83160 3.07857 3.09638 3.17506 3.66984 3.88759 3.92986 4.07907 4.37306 4.61407 4.64920 4.68754 4.84930 4.99922 5.09661 5.25831 5.34682 5.44438 5.54041 5.60249 5.61363 5.62210 5.67998 5.82754 5.88749 5.91017 6.08394 6.11536 6.19963 6.29262 6.73135 6.89624 6.99912 7.03539 7.22387 7.36450 7.39339 7.71534 7.77450 7.93968 8.11685 8.20687 8.51503 8.80995 8.84563 8.97948 10.15446 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.002570 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.337998 B =10893.823678 C =11616.709949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.560 6.560 6 C -0.149 4.149 7 C -0.127 4.127 8 C 0.121 3.879 9 N -0.738 5.738 10 C 0.563 3.437 11 O -0.548 6.548 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.093 4.093 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.373 0.627 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.797 -8.956 3.672 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.366 6.366 6 C -0.187 4.187 7 C -0.165 4.165 8 C -0.003 4.003 9 N -0.392 5.392 10 C 0.353 3.647 11 O -0.426 6.426 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.113 4.113 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.457 -9.460 3.096 18.385 hybrid contribution 0.775 -0.092 0.282 0.830 sum -14.682 -9.552 3.379 17.839 Atomic orbital electron populations 1.21707 0.95208 1.01364 1.02401 1.22258 0.97071 0.97403 1.02790 1.22003 0.93128 0.92484 0.87760 0.88383 1.86586 1.76953 1.57345 1.15679 1.22232 0.96000 0.97270 1.03201 1.21723 0.94522 0.97093 1.03150 1.21236 0.93196 0.84200 1.01667 1.45958 1.08167 1.08157 1.76892 1.18856 0.81193 0.89950 0.74672 1.90688 1.55025 1.46537 1.50382 1.19484 0.95329 0.90263 1.08069 1.20345 0.96223 0.92688 1.14566 1.20436 0.95334 0.95024 1.00822 1.21096 0.92547 0.97975 1.11599 1.17604 0.93255 0.90807 0.88766 1.19555 0.91837 1.00467 1.37041 0.90098 1.25974 1.01860 0.94217 0.92589 1.69787 1.38318 1.09775 1.22880 0.86317 0.81521 0.78733 0.79900 1.18713 1.20236 1.18967 1.21642 0.92705 0.98023 0.98945 0.92095 0.92960 0.92758 0.91670 0.91029 0.77994 0.91281 0.90675 0.91358 0.90650 0.92108 0.92082 0.76558 0.89223 0.88888 0.88614 0.90387 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.15 0.36 -0.60 16 2 C -0.16 -0.99 5.61 -26.73 -0.15 -1.14 16 3 C 0.11 0.78 2.97 -26.72 -0.08 0.70 16 4 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 5 O -0.56 -4.70 12.41 -35.23 -0.44 -5.14 16 6 C -0.15 -1.18 4.89 -26.73 -0.13 -1.31 16 7 C -0.13 -1.27 5.22 -26.73 -0.14 -1.41 16 8 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 9 N -0.74 -12.47 5.51 -61.24 -0.34 -12.81 16 10 C 0.56 12.60 7.77 -12.31 -0.10 12.51 16 11 O -0.55 -14.06 16.33 5.33 0.09 -13.97 16 12 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 13 C -0.22 -4.65 9.55 -38.92 -0.37 -5.02 16 14 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 15 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 16 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 17 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.78 -20.96 10.96 55.55 0.61 -20.35 16 21 Si 0.91 18.91 29.60 -169.99 -5.03 13.88 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 C -0.09 -2.52 8.24 -38.44 -0.32 -2.84 16 26 H 0.06 0.42 7.82 -51.93 -0.41 0.02 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.37 1.98 9.05 45.56 0.41 2.40 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 5.87 6.49 -40.82 -0.26 5.60 16 39 H 0.09 1.58 6.38 -52.49 -0.33 1.25 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 41 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 43 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -31.03 358.32 -9.00 -40.02 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.92 Total: 10.82 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.36 Total: -17.85 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.27 Total: -33.15 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.35 Total: -19.12 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.03 -9.00 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343610307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.801 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds