Wall clock time and date at job start Tue Mar 31 2020 07:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 H 1.09000 * 109.46972 * 304.99764 * 3 2 1 5 5 O 1.42894 * 109.46923 * 65.00043 * 3 2 1 6 6 C 1.53005 * 109.46946 * 185.00259 * 3 2 1 7 7 C 1.52993 * 109.47032 * 175.00512 * 6 3 2 8 8 C 1.53000 * 109.47167 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00104 * 179.97438 * 9 8 7 11 11 O 1.21546 * 119.99494 * 0.02562 * 10 9 8 12 12 C 1.47880 * 119.99645 * 180.02562 * 10 9 8 13 13 C 1.39922 * 120.03159 * 359.72546 * 12 10 9 14 14 C 1.38323 * 120.35784 * 179.73858 * 13 12 10 15 15 C 1.37747 * 120.41494 * 0.55987 * 14 13 12 16 16 C 1.40749 * 120.03885 * 359.69973 * 15 14 13 17 17 C 1.41442 * 120.17644 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99716 * 24.44004 * 17 16 15 19 19 C 1.39936 * 119.99948 * 204.43281 * 17 16 15 20 20 N 1.30832 * 119.99776 * 17.88315 * 19 17 16 21 21 Si 1.86796 * 120.00199 * 197.88146 * 19 17 16 22 22 H 1.48498 * 109.46992 * 60.00165 * 21 19 17 23 23 H 1.48505 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47299 * 300.00327 * 21 19 17 25 25 C 1.38996 * 120.02295 * 179.97438 * 12 10 9 26 26 H 1.09002 * 109.47226 * 300.00729 * 1 2 3 27 27 H 1.08992 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46789 * 59.99764 * 1 2 3 29 29 H 1.09004 * 109.47160 * 119.99875 * 2 1 3 30 30 H 1.09001 * 109.47161 * 240.00056 * 2 1 3 31 31 H 0.96697 * 114.00072 * 60.00154 * 5 3 2 32 32 H 1.09002 * 109.46808 * 294.99803 * 6 3 2 33 33 H 1.08996 * 109.47609 * 54.99780 * 6 3 2 34 34 H 1.09002 * 109.46746 * 299.99330 * 7 6 3 35 35 H 1.08998 * 109.48025 * 59.99341 * 7 6 3 36 36 H 1.08990 * 109.47131 * 299.99838 * 8 7 6 37 37 H 1.09007 * 109.46988 * 59.99820 * 8 7 6 38 38 H 0.96999 * 119.99665 * 0.02562 * 9 8 7 39 39 H 1.07997 * 119.81595 * 0.02562 * 13 12 10 40 40 H 1.08005 * 119.79117 * 180.28030 * 14 13 12 41 41 H 1.07998 * 119.98327 * 179.71707 * 15 14 13 42 42 H 0.97001 * 120.00198 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.20227 * 359.96088 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 6 4.0645 2.8849 -0.2511 8 6 5.5894 2.8868 -0.3762 9 7 6.0679 4.2662 -0.4968 10 6 7.3871 4.5137 -0.6190 11 8 8.1798 3.5923 -0.6297 12 6 7.8700 5.9061 -0.7402 13 6 6.9575 6.9668 -0.7337 14 6 7.4022 8.2722 -0.8412 15 6 8.7469 8.5427 -0.9673 16 6 9.6794 7.4885 -0.9812 17 6 11.0609 7.7630 -1.1100 18 1 11.4507 8.7242 -0.8096 19 6 11.9226 6.7889 -1.6267 20 7 11.4382 5.7809 -2.3058 21 14 13.7642 6.9277 -1.3468 22 1 14.0454 6.9183 0.1113 23 1 14.4508 5.7793 -1.9912 24 1 14.2607 8.1960 -1.9385 25 6 9.2304 6.1620 -0.8657 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.0141 1.6542 2.0138 32 1 4.0029 0.9836 0.7596 33 1 3.8571 0.8800 -1.0113 34 1 3.6265 3.3457 -1.1365 35 1 3.7724 3.4493 0.6345 36 1 6.0272 2.4261 0.5093 37 1 5.8820 2.3224 -1.2617 38 1 5.4352 5.0014 -0.4879 39 1 5.9006 6.7654 -0.6397 40 1 6.6901 9.0843 -0.8306 41 1 9.0860 9.5643 -1.0553 42 1 12.0355 5.1059 -2.6642 43 1 9.9382 5.3463 -0.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343610307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:25 Heat of formation + Delta-G solvation = -121.510123 kcal Electronic energy + Delta-G solvation = -22098.910518 eV Core-core repulsion = 18720.485483 eV Total energy + Delta-G solvation = -3378.425035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91246 -39.22304 -38.79095 -36.48390 -35.60174 -33.93495 -33.29641 -31.87053 -31.27590 -28.72049 -27.18252 -25.31730 -23.66552 -22.81806 -22.35824 -22.15790 -21.07854 -19.47572 -17.95730 -17.40085 -17.22978 -16.90608 -16.65595 -16.40999 -16.34997 -15.66161 -15.26827 -15.09452 -15.02701 -14.37036 -14.27165 -14.22960 -13.68476 -13.49580 -13.22798 -12.97797 -12.93310 -12.80761 -12.55318 -12.54660 -12.43370 -12.19949 -11.91136 -11.82431 -11.70543 -11.55291 -11.51707 -11.07091 -10.91136 -10.61902 -10.15502 -9.47735 -9.39299 -8.67204 -6.38786 0.37135 1.00669 1.35761 1.47593 1.50495 2.09028 2.18927 2.26028 2.78077 3.49331 3.69270 3.73748 3.92341 4.02763 4.07368 4.20290 4.32109 4.38938 4.43649 4.51174 4.59359 4.67211 4.74828 4.83622 4.89493 4.97212 4.98670 5.08228 5.13621 5.17003 5.18790 5.30355 5.30867 5.40521 5.42988 5.48348 5.52479 5.86064 5.92112 6.04693 6.28019 6.50667 6.68271 6.87022 6.91751 6.94053 7.30197 8.29514 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.002570 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.337998 B =10893.823678 C =11616.709949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.110 3.890 4 H 0.093 0.907 5 O -0.576 6.576 6 C -0.144 4.144 7 C -0.114 4.114 8 C 0.118 3.882 9 N -0.714 5.714 10 C 0.558 3.442 11 O -0.592 6.592 12 C -0.140 4.140 13 C -0.198 4.198 14 C -0.096 4.096 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.826 5.826 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.385 0.615 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.287 0.713 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 -8.431 4.153 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.051 3.949 4 H 0.111 0.889 5 O -0.384 6.384 6 C -0.183 4.183 7 C -0.152 4.152 8 C -0.005 4.005 9 N -0.367 5.367 10 C 0.347 3.653 11 O -0.474 6.474 12 C -0.143 4.143 13 C -0.218 4.218 14 C -0.114 4.114 15 C -0.237 4.237 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.251 0.749 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.732 -8.918 3.589 20.171 hybrid contribution 1.219 -0.237 0.171 1.253 sum -16.514 -9.155 3.761 19.253 Atomic orbital electron populations 1.21703 0.95363 1.01685 1.01929 1.22226 0.96870 0.96701 1.03419 1.21939 0.92436 0.93067 0.87445 0.88860 1.86553 1.77298 1.58032 1.16499 1.22208 0.96456 0.95824 1.03784 1.21642 0.91160 0.98766 1.03604 1.21460 0.95865 0.82105 1.01056 1.45798 1.06310 1.10162 1.74432 1.18776 0.82721 0.88944 0.74818 1.90662 1.56626 1.47423 1.52647 1.19800 0.94861 0.92219 1.07439 1.20859 0.98005 0.91818 1.11111 1.20934 0.95063 0.96496 0.98861 1.21415 0.93576 0.97948 1.10763 1.17965 0.94337 0.91531 0.89815 1.19845 0.92686 1.01347 1.38775 0.89695 1.26892 1.06676 0.93480 0.91663 1.69892 1.39958 1.10872 1.24390 0.85222 0.75381 0.79231 0.79735 1.18475 1.19672 1.17543 1.21457 0.93823 0.97476 1.02596 0.92787 0.92275 0.93000 0.90934 0.90530 0.76554 0.90644 0.90252 0.90658 0.90313 0.92655 0.92875 0.74920 0.84565 0.84267 0.87264 0.90288 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.81 71.98 0.71 -0.95 16 2 C -0.15 -1.60 5.61 30.59 0.17 -1.43 16 3 C 0.11 1.38 2.97 30.60 0.09 1.48 16 4 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 5 O -0.58 -8.35 12.41 -148.98 -1.85 -10.20 16 6 C -0.14 -1.95 4.89 30.59 0.15 -1.80 16 7 C -0.11 -1.99 5.22 30.59 0.16 -1.83 16 8 C 0.12 3.11 5.67 86.38 0.49 3.60 16 9 N -0.71 -22.91 5.51 -465.93 -2.57 -25.48 16 10 C 0.56 25.09 7.77 86.80 0.67 25.77 16 11 O -0.59 -31.52 16.33 -3.86 -0.06 -31.59 16 12 C -0.14 -6.75 5.87 -20.13 -0.12 -6.87 16 13 C -0.20 -7.88 9.55 22.70 0.22 -7.66 16 14 C -0.10 -3.82 10.01 22.17 0.22 -3.60 16 15 C -0.22 -10.25 9.78 22.77 0.22 -10.03 16 16 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 17 C -0.50 -27.38 9.05 23.47 0.21 -27.17 16 18 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 19 C 0.03 1.47 5.14 85.25 0.44 1.91 16 20 N -0.83 -46.72 10.96 21.82 0.24 -46.48 16 21 Si 0.98 40.01 29.60 68.60 2.03 42.04 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 C -0.13 -7.52 8.24 23.01 0.19 -7.33 16 26 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.39 3.22 9.05 -74.06 -0.67 2.55 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.37 7.82 -2.39 -0.02 1.35 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.51 8.14 -2.38 -0.02 1.50 16 38 H 0.41 10.74 6.49 -92.71 -0.60 10.14 16 39 H 0.14 4.09 6.38 -2.91 -0.02 4.07 16 40 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 43 H 0.10 6.20 5.74 -2.91 -0.02 6.18 16 Total: -1.00 -71.44 358.32 1.24 -70.20 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.26 Total: 33.92 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.71 Total: -32.41 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -2.33 Total: -71.96 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.91 Total: -41.79 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -71.44 1.24 -70.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343610307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.312 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds