Wall clock time and date at job start Tue Mar 31 2020 07:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.53004 * 109.47293 * 119.99910 * 2 1 3 5 5 O 1.42899 * 109.47263 * 175.00491 * 4 2 1 6 6 C 1.42897 * 113.99748 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.08994 * 109.47482 * 299.99820 * 1 2 3 26 26 H 1.09003 * 109.47029 * 60.00141 * 1 2 3 27 27 H 1.09008 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47884 * 240.00262 * 2 1 3 29 29 H 1.09008 * 109.46828 * 59.99574 * 3 2 1 30 30 H 1.08998 * 109.47589 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46880 * 300.00386 * 3 2 1 32 32 H 1.08998 * 109.46694 * 54.99996 * 4 2 1 33 33 H 1.09001 * 109.47053 * 295.00632 * 4 2 1 34 34 H 1.09001 * 109.47514 * 60.00230 * 6 5 4 35 35 H 1.09001 * 109.47332 * 299.99167 * 6 5 4 36 36 H 1.09004 * 109.46955 * 59.99816 * 7 6 5 37 37 H 1.08999 * 109.47357 * 300.00207 * 7 6 5 38 38 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 39 39 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 41 41 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 42 42 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 43 43 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0449 -1.4855 2.3176 7 6 5.5648 -1.5380 2.1500 8 6 6.1773 -2.2354 3.3372 9 8 5.4680 -2.6500 4.2293 10 7 7.5133 -2.3992 3.4071 11 6 8.0715 -3.1220 4.4567 12 6 7.5038 -3.0710 5.7206 13 6 8.0658 -3.7869 6.7609 14 6 9.1964 -4.5661 6.5535 15 6 9.7728 -4.6383 5.3185 16 6 9.2203 -3.9192 4.2423 17 6 9.8104 -3.9879 2.9628 18 1 9.2138 -3.8005 2.0823 19 6 11.1690 -4.2987 2.8344 20 7 11.9932 -4.0491 3.8196 21 14 11.8056 -5.0701 1.2568 22 1 13.2679 -5.3003 1.3733 23 1 11.1177 -6.3660 1.0267 24 1 11.5370 -4.1578 0.1163 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.6520 -2.4999 2.3852 35 1 3.7982 -0.9387 3.2277 36 1 5.9581 -0.5237 2.0821 37 1 5.8114 -2.0849 1.2399 38 1 8.0855 -2.0132 2.7257 39 1 6.6247 -2.4678 5.8934 40 1 7.6214 -3.7402 7.7440 41 1 9.6232 -5.1199 7.3766 42 1 10.6517 -5.2474 5.1672 43 1 11.6789 -3.5783 4.6074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344335928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:08 Heat of formation + Delta-G solvation = -91.821896 kcal Electronic energy + Delta-G solvation = -22482.773795 eV Core-core repulsion = 19105.636138 eV Total energy + Delta-G solvation = -3377.137657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.72596 -38.39638 -37.39992 -35.31039 -33.99427 -33.79777 -31.49131 -29.37163 -28.47472 -27.40102 -26.20178 -25.13221 -23.63960 -21.46413 -20.86635 -20.41754 -19.38761 -18.03100 -17.20017 -16.46305 -16.35388 -15.80263 -15.25702 -14.88414 -14.74600 -14.39040 -14.13086 -13.74925 -13.50180 -13.23076 -12.90205 -12.72726 -12.61468 -12.39450 -12.23422 -11.99115 -11.62623 -11.42782 -11.39067 -11.20467 -11.05020 -10.97335 -10.78248 -10.71435 -10.45552 -10.34050 -9.72360 -9.63381 -9.36568 -9.07940 -8.88416 -7.64025 -7.40926 -6.98651 -4.50032 2.53710 2.78109 3.11049 3.20943 3.24276 3.31560 3.37956 3.95273 4.14661 4.52481 4.60974 4.66501 4.88486 4.99103 5.09967 5.26009 5.26601 5.34152 5.36879 5.44861 5.49865 5.60244 5.65582 5.69149 5.80183 5.84405 5.89963 6.04326 6.10925 6.18953 6.31464 6.46846 6.81075 6.93471 7.12834 7.13449 7.36790 7.50331 7.69935 7.74725 7.89676 8.00205 8.20649 8.31798 8.65396 8.75381 8.93732 9.97864 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003167 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.126103 B = 8838.912373 C =10086.051222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.067 3.933 5 O -0.391 6.391 6 C 0.081 3.919 7 C -0.137 4.137 8 C 0.502 3.498 9 O -0.545 6.545 10 N -0.634 5.634 11 C 0.004 3.996 12 C -0.072 4.072 13 C -0.242 4.242 14 C -0.091 4.091 15 C -0.209 4.209 16 C 0.091 3.909 17 C -0.525 4.525 18 H 0.075 0.925 19 C 0.040 3.960 20 N -0.794 5.794 21 Si 1.064 2.936 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.404 0.596 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.286 7.261 -7.631 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.009 4.009 5 O -0.310 6.310 6 C 0.004 3.996 7 C -0.177 4.177 8 C 0.288 3.712 9 O -0.424 6.424 10 N -0.276 5.276 11 C -0.089 4.089 12 C -0.092 4.092 13 C -0.262 4.262 14 C -0.110 4.110 15 C -0.228 4.228 16 C 0.087 3.913 17 C -0.553 4.553 18 H 0.093 0.907 19 C -0.182 4.182 20 N -0.417 5.417 21 Si 0.888 3.112 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.239 0.761 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.280 6.453 -7.863 15.945 hybrid contribution -1.234 0.610 0.698 1.543 sum -13.513 7.062 -7.165 16.847 Atomic orbital electron populations 1.21789 0.94432 1.01993 1.02153 1.21106 0.95370 0.96969 0.97998 1.21791 1.02062 0.95056 1.01271 1.22545 0.81268 0.99207 0.97910 1.87780 1.19926 1.79308 1.44011 1.22093 0.92132 0.97081 0.88267 1.21433 0.95155 1.02789 0.98329 1.20332 0.82630 0.80512 0.87682 1.90649 1.61109 1.50644 1.39990 1.42821 1.06012 1.51782 1.27019 1.17602 1.02036 1.02455 0.86821 1.20696 0.98483 0.98844 0.91208 1.20263 1.00864 1.07404 0.97633 1.20404 0.95759 0.98498 0.96371 1.20755 1.04009 1.04833 0.93253 1.17494 0.91501 0.88771 0.93574 1.20333 0.96881 1.44790 0.93324 0.90728 1.26981 0.93553 0.93787 1.03871 1.70469 1.38751 1.25216 1.07256 0.83642 0.76911 0.77304 0.73371 1.19849 1.20032 1.20117 0.92511 0.92076 0.92503 0.90365 0.92948 0.91732 0.92903 0.93384 0.93374 0.92480 0.92554 0.88455 0.88222 0.76107 0.87169 0.89015 0.89170 0.87350 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.83 3.16 -90.62 -0.29 -1.12 16 3 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 4 C 0.07 0.70 5.32 37.16 0.20 0.90 16 5 O -0.39 -5.00 9.88 -35.23 -0.35 -5.35 16 6 C 0.08 1.11 5.23 37.16 0.19 1.31 16 7 C -0.14 -1.91 6.07 -27.88 -0.17 -2.08 16 8 C 0.50 9.42 7.67 -10.98 -0.08 9.33 16 9 O -0.55 -11.97 13.40 5.56 0.07 -11.89 16 10 N -0.63 -12.86 4.90 -9.48 -0.05 -12.91 16 11 C 0.00 0.11 6.33 -83.17 -0.53 -0.42 16 12 C -0.07 -1.74 8.69 -39.44 -0.34 -2.08 16 13 C -0.24 -5.62 10.04 -39.36 -0.39 -6.01 16 14 C -0.09 -2.14 9.97 -39.99 -0.40 -2.54 16 15 C -0.21 -5.28 7.87 -39.28 -0.31 -5.59 16 16 C 0.09 2.33 5.32 -106.65 -0.57 1.76 16 17 C -0.53 -13.07 8.35 -37.86 -0.32 -13.38 16 18 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 19 C 0.04 0.98 4.95 -17.33 -0.09 0.89 16 20 N -0.79 -20.25 12.32 55.55 0.68 -19.56 16 21 Si 1.06 20.68 30.00 -169.99 -5.10 15.58 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.40 7.33 7.95 -40.82 -0.32 7.01 16 39 H 0.11 2.61 6.20 -52.49 -0.33 2.29 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.80 6.45 -52.49 -0.34 2.46 16 43 H 0.30 7.88 6.62 -40.82 -0.27 7.61 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -28.75 355.23 -8.56 -37.30 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.76 Total: 12.08 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.41 Total: -20.59 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.64 Total: -32.47 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.27 Total: -17.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.10 Total: 15.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.75 -8.56 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.520 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds