Wall clock time and date at job start Tue Mar 31 2020 07:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.53004 * 109.47293 * 119.99910 * 2 1 3 5 5 O 1.42899 * 109.47263 * 175.00491 * 4 2 1 6 6 C 1.42897 * 113.99748 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.08994 * 109.47482 * 299.99820 * 1 2 3 26 26 H 1.09003 * 109.47029 * 60.00141 * 1 2 3 27 27 H 1.09008 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47884 * 240.00262 * 2 1 3 29 29 H 1.09008 * 109.46828 * 59.99574 * 3 2 1 30 30 H 1.08998 * 109.47589 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46880 * 300.00386 * 3 2 1 32 32 H 1.08998 * 109.46694 * 54.99996 * 4 2 1 33 33 H 1.09001 * 109.47053 * 295.00632 * 4 2 1 34 34 H 1.09001 * 109.47514 * 60.00230 * 6 5 4 35 35 H 1.09001 * 109.47332 * 299.99167 * 6 5 4 36 36 H 1.09004 * 109.46955 * 59.99816 * 7 6 5 37 37 H 1.08999 * 109.47357 * 300.00207 * 7 6 5 38 38 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 39 39 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 41 41 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 42 42 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 43 43 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0449 -1.4855 2.3176 7 6 5.5648 -1.5380 2.1500 8 6 6.1773 -2.2354 3.3372 9 8 5.4680 -2.6500 4.2293 10 7 7.5133 -2.3992 3.4071 11 6 8.0715 -3.1220 4.4567 12 6 7.5038 -3.0710 5.7206 13 6 8.0658 -3.7869 6.7609 14 6 9.1964 -4.5661 6.5535 15 6 9.7728 -4.6383 5.3185 16 6 9.2203 -3.9192 4.2423 17 6 9.8104 -3.9879 2.9628 18 1 9.2138 -3.8005 2.0823 19 6 11.1690 -4.2987 2.8344 20 7 11.9932 -4.0491 3.8196 21 14 11.8056 -5.0701 1.2568 22 1 13.2679 -5.3003 1.3733 23 1 11.1177 -6.3660 1.0267 24 1 11.5370 -4.1578 0.1163 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.6520 -2.4999 2.3852 35 1 3.7982 -0.9387 3.2277 36 1 5.9581 -0.5237 2.0821 37 1 5.8114 -2.0849 1.2399 38 1 8.0855 -2.0132 2.7257 39 1 6.6247 -2.4678 5.8934 40 1 7.6214 -3.7402 7.7440 41 1 9.6232 -5.1199 7.3766 42 1 10.6517 -5.2474 5.1672 43 1 11.6789 -3.5783 4.6074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344335928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:08 Heat of formation + Delta-G solvation = -106.914755 kcal Electronic energy + Delta-G solvation = -22483.428271 eV Core-core repulsion = 19105.636138 eV Total energy + Delta-G solvation = -3377.792132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33649 -39.53217 -38.99062 -36.11413 -35.79579 -35.52862 -32.71759 -31.25085 -30.19837 -28.00725 -27.21943 -26.82230 -24.93557 -23.19993 -22.54870 -21.28506 -20.88928 -19.85545 -18.50618 -18.01505 -17.48458 -17.07170 -16.60687 -16.38633 -15.97184 -15.73938 -15.57377 -15.09791 -14.93353 -14.46402 -14.15050 -14.11717 -13.89120 -13.79725 -13.50834 -13.24327 -12.98698 -12.69914 -12.47262 -12.43105 -12.37458 -12.15420 -11.95587 -11.92971 -11.74975 -11.51373 -11.49554 -11.10161 -10.84157 -10.63237 -10.60066 -9.55840 -9.30460 -8.82779 -6.41925 0.74592 0.91081 1.54207 1.65787 1.70705 1.81866 2.10149 2.34142 2.69710 2.90667 3.53287 3.71936 3.89673 3.95623 4.01601 4.12483 4.29246 4.39045 4.39730 4.47203 4.52558 4.59210 4.69186 4.71020 4.79389 4.81786 4.82672 4.95273 5.01193 5.05415 5.07419 5.22560 5.29475 5.39789 5.44497 5.48465 5.67201 5.77996 5.91209 6.01796 6.12358 6.17417 6.34330 6.60147 6.85431 6.91011 7.31869 8.05368 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003167 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.126103 B = 8838.912373 C =10086.051222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.059 3.941 5 O -0.397 6.397 6 C 0.087 3.913 7 C -0.124 4.124 8 C 0.502 3.498 9 O -0.578 6.578 10 N -0.636 5.636 11 C 0.000 4.000 12 C -0.088 4.088 13 C -0.242 4.242 14 C -0.096 4.096 15 C -0.228 4.228 16 C 0.063 3.937 17 C -0.543 4.543 18 H 0.082 0.918 19 C 0.007 3.993 20 N -0.814 5.814 21 Si 1.115 2.885 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.252 1.252 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.413 0.587 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 7.817 -9.126 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.017 4.017 5 O -0.316 6.316 6 C 0.010 3.990 7 C -0.163 4.163 8 C 0.291 3.709 9 O -0.458 6.458 10 N -0.278 5.278 11 C -0.094 4.094 12 C -0.109 4.109 13 C -0.262 4.262 14 C -0.115 4.115 15 C -0.248 4.248 16 C 0.059 3.941 17 C -0.571 4.571 18 H 0.100 0.900 19 C -0.210 4.210 20 N -0.437 5.437 21 Si 0.932 3.068 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.176 1.176 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.250 0.750 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.330 7.037 -9.367 17.747 hybrid contribution -1.029 0.475 1.238 1.678 sum -14.358 7.512 -8.129 18.129 Atomic orbital electron populations 1.21772 0.92886 1.02470 1.02903 1.21130 0.96596 0.96739 0.96842 1.21782 1.01097 0.95128 1.02067 1.22777 0.79996 0.99815 0.99100 1.87765 1.21382 1.79079 1.43414 1.21938 0.91951 0.96595 0.88534 1.21368 0.95057 1.03629 0.96272 1.21122 0.81754 0.79601 0.88397 1.90628 1.61632 1.51935 1.41641 1.42864 1.06876 1.51609 1.26500 1.17792 1.01579 1.02078 0.87950 1.20882 0.98804 0.99516 0.91654 1.20608 1.00491 1.06462 0.98635 1.20666 0.95732 0.98583 0.96514 1.20795 1.04171 1.05491 0.94362 1.17829 0.92503 0.89533 0.94230 1.20532 0.97474 1.45728 0.93337 0.90005 1.28338 0.93681 0.93088 1.05923 1.70577 1.39052 1.26571 1.07518 0.83017 0.76150 0.77086 0.70534 1.20055 1.19494 1.17554 0.92127 0.90974 0.92198 0.90798 0.92680 0.93187 0.91627 0.93055 0.92948 0.93508 0.93074 0.86002 0.86493 0.75002 0.87081 0.86499 0.86631 0.88691 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 71.98 0.66 -1.01 16 2 C -0.09 -1.48 3.16 -10.79 -0.03 -1.52 16 3 C -0.14 -2.20 9.09 71.98 0.65 -1.54 16 4 C 0.06 1.15 5.32 71.98 0.38 1.53 16 5 O -0.40 -9.54 9.88 -148.98 -1.47 -11.01 16 6 C 0.09 2.27 5.23 71.98 0.38 2.65 16 7 C -0.12 -3.22 6.07 29.85 0.18 -3.04 16 8 C 0.50 18.42 7.67 87.65 0.67 19.09 16 9 O -0.58 -25.22 13.40 -3.03 -0.04 -25.26 16 10 N -0.64 -25.45 4.90 -302.28 -1.48 -26.93 16 11 C 0.00 0.02 6.33 38.88 0.25 0.27 16 12 C -0.09 -4.24 8.69 22.36 0.19 -4.05 16 13 C -0.24 -11.10 10.04 22.42 0.22 -10.88 16 14 C -0.10 -4.49 9.97 22.01 0.22 -4.28 16 15 C -0.23 -11.75 7.87 22.47 0.18 -11.58 16 16 C 0.06 3.28 5.32 -21.18 -0.11 3.17 16 17 C -0.54 -27.09 8.35 23.38 0.20 -26.89 16 18 H 0.08 3.84 7.39 -2.91 -0.02 3.82 16 19 C 0.01 0.33 4.95 85.26 0.42 0.75 16 20 N -0.81 -42.18 12.32 21.83 0.27 -41.91 16 21 Si 1.11 40.83 30.00 68.60 2.06 42.88 16 22 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 0.90 7.82 -2.39 -0.02 0.89 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 37 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.41 14.68 7.95 -92.71 -0.74 13.94 16 39 H 0.11 5.27 6.20 -2.91 -0.02 5.25 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.10 5.06 6.45 -2.91 -0.02 5.04 16 43 H 0.29 15.46 6.62 -92.70 -0.61 14.84 16 Total: -1.00 -61.87 355.23 4.21 -57.67 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: 0.41 Total: 41.87 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.46 Total: -37.32 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.21 Total: -68.84 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.51 Total: -36.26 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.06 Total: 42.88 kcal Total: -61.87 4.21 -57.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.249 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds