Wall clock time and date at job start Tue Mar 31 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 H 1.08989 * 109.47334 * 305.76429 * 3 2 1 5 5 C 1.53002 * 109.47031 * 65.76918 * 3 2 1 6 6 C 1.52999 * 109.47129 * 185.76530 * 3 2 1 7 7 H 1.09003 * 109.47546 * 181.61725 * 6 3 2 8 8 O 1.42903 * 109.47050 * 301.61542 * 6 3 2 9 9 C 1.42899 * 114.00163 * 253.06763 * 8 6 3 10 10 C 1.50704 * 109.47114 * 61.61418 * 6 3 2 11 11 O 1.21286 * 119.99792 * 245.80567 * 10 6 3 12 12 N 1.34771 * 119.99737 * 65.80883 * 10 6 3 13 13 C 1.39127 * 120.00007 * 184.03474 * 12 10 6 14 14 C 1.38647 * 120.28125 * 327.94164 * 13 12 10 15 15 C 1.38223 * 120.03635 * 179.70636 * 14 13 12 16 16 C 1.38866 * 120.61241 * 0.03966 * 15 14 13 17 17 C 1.36470 * 120.57920 * 359.97438 * 16 15 14 18 18 C 1.40734 * 119.93956 * 359.97438 * 17 16 15 19 19 C 1.41078 * 120.29852 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99928 * 144.49689 * 19 18 17 21 21 C 1.39956 * 119.99551 * 324.49390 * 19 18 17 22 22 N 1.30852 * 119.99520 * 170.30266 * 21 19 18 23 23 Si 1.86801 * 120.00543 * 350.30264 * 21 19 18 24 24 H 1.48497 * 109.46931 * 91.10370 * 23 21 19 25 25 H 1.48497 * 109.47128 * 211.10314 * 23 21 19 26 26 H 1.48503 * 109.46937 * 331.10531 * 23 21 19 27 27 H 1.08996 * 109.47093 * 300.00301 * 1 2 3 28 28 H 1.09002 * 109.46890 * 60.00533 * 1 2 3 29 29 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47612 * 239.99750 * 2 1 3 31 31 H 1.09007 * 109.46912 * 119.99960 * 2 1 3 32 32 H 1.09006 * 109.47181 * 175.20416 * 5 3 2 33 33 H 1.08997 * 109.46747 * 295.19645 * 5 3 2 34 34 H 1.08995 * 109.47281 * 55.19934 * 5 3 2 35 35 H 1.09002 * 109.47239 * 183.89134 * 9 8 6 36 36 H 1.08997 * 109.47330 * 303.89513 * 9 8 6 37 37 H 1.08999 * 109.46589 * 63.89397 * 9 8 6 38 38 H 0.97002 * 120.00391 * 4.02775 * 12 10 6 39 39 H 1.08002 * 119.98176 * 359.72393 * 14 13 12 40 40 H 1.08000 * 119.69781 * 180.02562 * 15 14 13 41 41 H 1.08004 * 119.71166 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.02912 * 179.97438 * 17 16 15 43 43 H 0.97006 * 120.00258 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9852 -0.8338 5 6 1.6518 2.1207 1.3154 6 6 3.5631 1.4450 -0.1449 7 1 3.9292 2.4713 -0.1161 8 8 4.1448 0.7014 0.9279 9 6 4.7919 1.5106 1.9121 10 6 3.9437 0.8125 -1.4588 11 8 4.5548 -0.2350 -1.4730 12 7 3.6051 1.4111 -2.6178 13 6 3.8820 0.7868 -3.8300 14 6 4.9992 -0.0240 -3.9597 15 6 5.2661 -0.6466 -5.1645 16 6 4.4241 -0.4685 -6.2543 17 6 3.3177 0.3243 -6.1547 18 6 3.0227 0.9688 -4.9388 19 6 1.8807 1.7896 -4.8272 20 1 1.3255 1.8193 -3.9013 21 6 1.4675 2.5654 -5.9163 22 7 0.3112 3.1770 -5.8825 23 14 2.5665 2.7278 -7.4181 24 1 2.2283 1.6630 -8.3963 25 1 2.3574 4.0586 -8.0429 26 1 3.9874 2.5908 -7.0087 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.0874 3.1192 1.3518 33 1 0.5663 2.1954 1.3791 34 1 2.0251 1.5306 2.1524 35 1 5.2664 0.8693 2.6549 36 1 5.5480 2.1316 1.4320 37 1 4.0546 2.1479 2.4002 38 1 3.1683 2.2771 -2.6070 39 1 5.6611 -0.1694 -3.1188 40 1 6.1376 -1.2773 -5.2594 41 1 4.6467 -0.9617 -7.1891 42 1 2.6692 0.4569 -7.0080 43 1 0.0248 3.7151 -6.6372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344385208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:35 Heat of formation + Delta-G solvation = -73.515594 kcal Electronic energy + Delta-G solvation = -24186.942840 eV Core-core repulsion = 20810.599004 eV Total energy + Delta-G solvation = -3376.343836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14248 -38.36064 -36.96061 -35.37858 -33.83914 -33.57855 -30.44576 -30.27375 -29.00749 -27.80848 -25.83105 -24.94799 -23.65613 -22.06424 -20.84204 -20.20791 -19.33964 -17.53721 -17.23347 -16.68301 -16.19139 -15.67851 -15.16980 -14.81125 -14.49310 -14.13928 -14.04380 -13.81193 -13.43442 -13.14269 -13.07833 -12.55322 -12.48283 -12.26221 -12.04288 -12.00021 -11.71072 -11.61944 -11.29332 -11.06462 -10.96473 -10.96175 -10.67842 -10.44800 -10.38979 -9.96604 -9.86046 -9.72422 -9.40317 -9.18144 -8.72147 -7.62741 -7.10807 -6.93038 -4.53798 2.39509 2.65029 3.08145 3.11735 3.22305 3.29020 3.45744 3.95796 4.21152 4.51357 4.73246 4.86580 5.03675 5.16619 5.24989 5.32656 5.33184 5.42600 5.59031 5.62818 5.63246 5.68495 5.77130 6.03163 6.06369 6.08086 6.13243 6.14993 6.32549 6.34109 6.49591 6.60884 6.64343 6.72530 6.96711 7.07753 7.18172 7.36894 7.49915 7.69629 7.79378 8.00816 8.26516 8.27915 8.57984 8.73342 8.90042 10.08384 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.005593 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.266899 B = 5005.411157 C = 5944.788584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.102 4.102 4 H 0.088 0.912 5 C -0.146 4.146 6 C 0.079 3.921 7 H 0.083 0.917 8 O -0.352 6.352 9 C 0.026 3.974 10 C 0.497 3.503 11 O -0.520 6.520 12 N -0.637 5.637 13 C 0.038 3.962 14 C -0.083 4.083 15 C -0.220 4.220 16 C -0.093 4.093 17 C -0.217 4.217 18 C 0.082 3.918 19 C -0.457 4.457 20 H 0.091 0.909 21 C 0.085 3.915 22 N -0.818 5.818 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.244 1.244 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.406 0.594 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 1.736 10.668 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.121 4.121 4 H 0.107 0.893 5 C -0.203 4.203 6 C 0.017 3.983 7 H 0.101 0.899 8 O -0.269 6.269 9 C -0.071 4.071 10 C 0.283 3.717 11 O -0.396 6.396 12 N -0.281 5.281 13 C -0.056 4.056 14 C -0.103 4.103 15 C -0.239 4.239 16 C -0.112 4.112 17 C -0.236 4.236 18 C 0.077 3.923 19 C -0.486 4.486 20 H 0.109 0.891 21 C -0.132 4.132 22 N -0.443 5.443 23 Si 0.736 3.264 24 H -0.196 1.196 25 H -0.221 1.221 26 H -0.167 1.167 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.242 0.758 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.916 0.967 10.662 11.096 hybrid contribution 0.050 0.867 -0.802 1.182 sum 2.966 1.834 9.860 10.459 Atomic orbital electron populations 1.21812 0.95888 1.01480 1.01707 1.21442 0.95508 0.95182 1.02937 1.21570 0.92547 0.98396 0.99580 0.89334 1.21878 1.01813 0.99649 0.96931 1.22073 0.94360 0.95240 0.86606 0.89872 1.88021 1.73191 1.32378 1.33331 1.22940 0.96217 0.96036 0.91866 1.20539 0.80470 0.85609 0.85131 1.90646 1.39294 1.22654 1.86995 1.42862 1.59153 1.22176 1.03931 1.17696 0.96397 1.04954 0.86584 1.20888 0.95461 0.96937 0.97024 1.20379 1.02174 1.07523 0.93866 1.20405 0.95265 0.98349 0.97153 1.20684 1.00636 1.03795 0.98521 1.17567 0.91279 0.92690 0.90716 1.19212 1.07543 1.21343 1.00531 0.89135 1.26061 0.94451 0.93497 0.99200 1.69642 1.17976 1.24585 1.32120 0.86352 0.82931 0.76515 0.80587 1.19650 1.22060 1.16745 0.92954 0.92377 0.92988 0.91633 0.91405 0.92968 0.91914 0.92169 0.89568 0.94085 0.93828 0.75827 0.86327 0.88496 0.88763 0.87819 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.68 37.16 0.36 -1.65 16 2 C -0.11 -1.69 5.02 -26.73 -0.13 -1.83 16 3 C -0.10 -1.37 2.22 -90.62 -0.20 -1.58 16 4 H 0.09 1.24 8.10 -51.94 -0.42 0.82 16 5 C -0.15 -1.54 7.80 37.16 0.29 -1.25 16 6 C 0.08 1.16 2.39 -27.88 -0.07 1.09 16 7 H 0.08 1.01 7.61 -51.93 -0.39 0.61 16 8 O -0.35 -5.27 8.84 -55.07 -0.49 -5.75 16 9 C 0.03 0.27 10.43 101.05 1.05 1.33 16 10 C 0.50 9.46 5.74 -10.99 -0.06 9.40 16 11 O -0.52 -11.75 13.78 -14.29 -0.20 -11.95 16 12 N -0.64 -12.64 4.97 -9.48 -0.05 -12.69 16 13 C 0.04 0.87 6.38 -83.17 -0.53 0.34 16 14 C -0.08 -1.90 8.70 -39.44 -0.34 -2.24 16 15 C -0.22 -4.78 10.04 -39.35 -0.39 -5.18 16 16 C -0.09 -2.04 9.97 -39.99 -0.40 -2.44 16 17 C -0.22 -5.15 6.95 -39.28 -0.27 -5.43 16 18 C 0.08 2.00 5.06 -106.65 -0.54 1.46 16 19 C -0.46 -11.52 8.75 -37.86 -0.33 -11.85 16 20 H 0.09 2.35 7.83 -52.49 -0.41 1.94 16 21 C 0.09 2.13 5.48 -17.33 -0.09 2.04 16 22 N -0.82 -20.86 13.93 55.55 0.77 -20.09 16 23 Si 0.91 20.19 24.46 -169.99 -4.16 16.03 16 24 H -0.27 -5.90 6.68 56.52 0.38 -5.52 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.24 -5.57 6.74 56.52 0.38 -5.19 16 27 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.20 7.08 -51.93 -0.37 0.83 16 31 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.63 6.82 -51.93 -0.35 0.27 16 34 H 0.06 0.63 7.06 -51.93 -0.37 0.26 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.04 0.38 6.71 -51.93 -0.35 0.03 16 38 H 0.41 7.32 7.98 -40.82 -0.33 6.99 16 39 H 0.12 2.71 6.02 -52.49 -0.32 2.40 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.10 2.44 4.78 -52.48 -0.25 2.19 16 43 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -29.27 340.67 -7.09 -36.36 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.45 Total: 10.74 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.67 Total: -17.78 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.73 Total: -32.78 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.68 Total: -17.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.16 Total: 16.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.27 -7.09 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344385208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.152 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds