Wall clock time and date at job start Tue Mar 31 2020 07:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47662 * 2 1 4 4 H 1.09007 * 109.46966 * 305.00250 * 3 2 1 5 5 C 1.53002 * 109.47332 * 64.99390 * 3 2 1 6 6 C 1.52993 * 109.47691 * 184.99988 * 3 2 1 7 7 H 1.08997 * 109.47556 * 59.99874 * 6 3 2 8 8 O 1.42901 * 109.46957 * 299.99980 * 6 3 2 9 9 C 1.42897 * 114.00096 * 150.00285 * 8 6 3 10 10 C 1.50703 * 109.47577 * 179.97438 * 6 3 2 11 11 O 1.21278 * 120.00396 * 114.99305 * 10 6 3 12 12 N 1.34777 * 119.99699 * 295.00352 * 10 6 3 13 13 C 1.39125 * 119.99884 * 175.25657 * 12 10 6 14 14 C 1.38647 * 120.28443 * 34.21053 * 13 12 10 15 15 C 1.38220 * 120.03385 * 179.97438 * 14 13 12 16 16 C 1.38872 * 120.61681 * 0.04470 * 15 14 13 17 17 C 1.36469 * 120.57568 * 0.02562 * 16 15 14 18 18 C 1.40733 * 119.94035 * 359.65585 * 17 16 15 19 19 C 1.41076 * 120.30109 * 180.34648 * 18 17 16 20 20 H 1.08003 * 120.00043 * 148.81526 * 19 18 17 21 21 C 1.39958 * 119.99911 * 328.81019 * 19 18 17 22 22 N 1.30849 * 119.99873 * 167.53054 * 21 19 18 23 23 Si 1.86807 * 120.00052 * 347.53141 * 21 19 18 24 24 H 1.48498 * 109.47001 * 92.49307 * 23 21 19 25 25 H 1.48493 * 109.47185 * 212.49531 * 23 21 19 26 26 H 1.48503 * 109.46616 * 332.49723 * 23 21 19 27 27 H 1.09003 * 109.47536 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46801 * 60.00374 * 1 2 3 29 29 H 1.08997 * 109.47459 * 300.00333 * 1 2 3 30 30 H 1.09009 * 109.47123 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.47202 * 239.99272 * 2 1 3 32 32 H 1.09003 * 109.47195 * 300.01023 * 5 3 2 33 33 H 1.09007 * 109.46797 * 60.00155 * 5 3 2 34 34 H 1.08993 * 109.47460 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47096 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46625 * 299.99367 * 9 8 6 37 37 H 1.08993 * 109.47598 * 59.99641 * 9 8 6 38 38 H 0.96998 * 119.99917 * 355.24940 * 12 10 6 39 39 H 1.07996 * 119.98466 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.69521 * 180.02562 * 15 14 13 41 41 H 1.07993 * 119.71343 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.02685 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8533 0.9569 -1.0570 8 8 4.1346 0.7375 0.9779 9 6 5.3745 0.0937 0.6781 10 6 4.0672 2.8650 -0.1263 11 8 4.7644 3.2622 0.7831 12 7 3.7416 3.6944 -1.1375 13 6 4.1218 5.0319 -1.0901 14 6 5.3223 5.3970 -0.5004 15 6 5.6952 6.7272 -0.4566 16 6 4.8768 7.7094 -0.9987 17 6 3.6892 7.3783 -1.5839 18 6 3.2892 6.0305 -1.6476 19 6 2.0665 5.6789 -2.2573 20 1 1.9662 4.7264 -2.7564 21 6 0.9836 6.5645 -2.2153 22 7 -0.0605 6.3577 -2.9765 23 14 1.0287 8.0417 -1.0727 24 1 1.5721 9.2154 -1.8024 25 1 -0.3464 8.3451 -0.6014 26 1 1.8963 7.7388 0.0938 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 0.5489 2.1252 1.3969 33 1 2.0698 1.5875 2.1492 34 1 1.9983 3.1543 1.3071 35 1 5.7411 -0.4206 1.5666 36 1 5.2239 -0.6294 -0.1235 37 1 6.1042 0.8393 0.3625 38 1 3.2422 3.3589 -1.8984 39 1 5.9668 4.6415 -0.0757 40 1 6.6317 7.0054 0.0038 41 1 5.1823 8.7443 -0.9561 42 1 3.0594 8.1494 -2.0024 43 1 -0.8109 6.9717 -2.9476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344385220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:41 Heat of formation + Delta-G solvation = -73.969603 kcal Electronic energy + Delta-G solvation = -24208.900499 eV Core-core repulsion = 20832.536976 eV Total energy + Delta-G solvation = -3376.363523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13981 -38.27233 -36.84897 -35.59061 -33.83642 -33.61778 -30.53408 -30.45106 -28.70386 -27.27254 -26.03477 -25.06542 -23.98943 -22.04502 -20.71323 -20.12444 -19.37076 -17.48937 -17.32137 -16.70884 -16.25830 -15.70205 -15.11428 -14.70768 -14.51342 -14.15216 -14.02839 -13.66030 -13.47324 -13.30464 -13.07367 -12.80676 -12.47642 -12.11424 -12.01201 -11.82413 -11.67079 -11.66262 -11.18515 -11.10636 -10.89939 -10.75074 -10.57413 -10.45281 -10.41610 -10.15513 -10.02246 -9.84074 -9.38416 -9.16554 -8.65094 -7.65384 -7.14812 -6.98359 -4.51836 2.40238 2.64516 3.07470 3.12976 3.24775 3.31465 3.62622 3.95341 4.01795 4.51410 4.80470 4.85595 5.02104 5.14534 5.25305 5.33034 5.39427 5.47200 5.61055 5.64559 5.71933 5.76640 5.81403 6.05801 6.05978 6.11621 6.13376 6.19721 6.26676 6.33695 6.48459 6.61113 6.63945 6.72067 6.97323 7.08686 7.14691 7.37087 7.47789 7.69638 7.79812 7.95262 8.22496 8.25061 8.56211 8.70349 8.89802 10.03630 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.006203 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.781653 B = 4512.753404 C = 5927.020672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.083 4.083 4 H 0.091 0.909 5 C -0.145 4.145 6 C 0.081 3.919 7 H 0.080 0.920 8 O -0.353 6.353 9 C 0.030 3.970 10 C 0.481 3.519 11 O -0.525 6.525 12 N -0.638 5.638 13 C 0.033 3.967 14 C -0.078 4.078 15 C -0.227 4.227 16 C -0.087 4.087 17 C -0.226 4.226 18 C 0.085 3.915 19 C -0.448 4.448 20 H 0.088 0.912 21 C 0.086 3.914 22 N -0.813 5.813 23 Si 0.911 3.089 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.243 1.243 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.403 0.597 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -10.405 2.765 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.102 4.102 4 H 0.109 0.891 5 C -0.202 4.202 6 C 0.019 3.981 7 H 0.098 0.902 8 O -0.270 6.270 9 C -0.067 4.067 10 C 0.267 3.733 11 O -0.402 6.402 12 N -0.282 5.282 13 C -0.061 4.061 14 C -0.098 4.098 15 C -0.246 4.246 16 C -0.106 4.106 17 C -0.246 4.246 18 C 0.080 3.920 19 C -0.477 4.477 20 H 0.106 0.894 21 C -0.132 4.132 22 N -0.438 5.438 23 Si 0.739 3.261 24 H -0.197 1.197 25 H -0.221 1.221 26 H -0.166 1.166 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.433 -10.171 3.505 11.030 hybrid contribution -0.223 0.655 -0.319 0.762 sum 2.210 -9.516 3.186 10.276 Atomic orbital electron populations 1.21827 0.95688 1.01278 1.02359 1.21488 0.95896 0.95476 1.02179 1.21287 0.90551 0.97620 1.00700 0.89076 1.21783 1.00965 1.00878 0.96548 1.22110 0.95017 0.89986 0.90995 0.90217 1.87964 1.36740 1.67561 1.34685 1.22817 0.86414 0.96136 1.01329 1.21192 0.81595 0.88311 0.82202 1.90645 1.37182 1.76482 1.35853 1.42919 1.55318 1.08449 1.21506 1.17592 0.96699 0.82717 1.09095 1.20791 0.94230 0.96049 0.98752 1.20332 1.01184 0.92811 1.10317 1.20378 0.94924 0.97459 0.97845 1.20634 0.98436 0.95928 1.09590 1.17557 0.92598 0.90426 0.91390 1.19160 0.94183 1.04246 1.30153 0.89416 1.26044 0.94683 0.98210 0.94282 1.69645 1.06326 1.36253 1.31560 0.86329 0.76827 0.80539 0.82445 1.19720 1.22092 1.16644 0.93021 0.92500 0.92330 0.91205 0.92337 0.92389 0.91929 0.92284 0.89583 0.94293 0.93752 0.76141 0.86741 0.88588 0.88817 0.87919 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.16 0.36 -1.28 16 2 C -0.11 -1.28 5.19 -26.74 -0.14 -1.41 16 3 C -0.08 -1.15 2.24 -90.63 -0.20 -1.35 16 4 H 0.09 1.29 8.09 -51.92 -0.42 0.87 16 5 C -0.14 -2.23 8.56 37.16 0.32 -1.92 16 6 C 0.08 1.19 2.26 -27.89 -0.06 1.13 16 7 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 8 O -0.35 -5.29 8.64 -55.08 -0.48 -5.77 16 9 C 0.03 0.35 10.81 101.05 1.09 1.44 16 10 C 0.48 9.10 5.72 -10.98 -0.06 9.04 16 11 O -0.53 -11.73 13.88 -14.29 -0.20 -11.93 16 12 N -0.64 -12.60 4.99 -9.47 -0.05 -12.65 16 13 C 0.03 0.76 6.35 -83.17 -0.53 0.23 16 14 C -0.08 -1.78 8.69 -39.44 -0.34 -2.12 16 15 C -0.23 -4.94 10.04 -39.35 -0.39 -5.34 16 16 C -0.09 -1.92 9.97 -39.98 -0.40 -2.32 16 17 C -0.23 -5.40 6.95 -39.28 -0.27 -5.68 16 18 C 0.08 2.08 5.14 -106.65 -0.55 1.53 16 19 C -0.45 -11.30 9.13 -37.86 -0.35 -11.65 16 20 H 0.09 2.21 7.08 -52.48 -0.37 1.83 16 21 C 0.09 2.17 5.47 -17.33 -0.09 2.08 16 22 N -0.81 -20.77 13.93 55.55 0.77 -20.00 16 23 Si 0.91 20.75 24.41 -169.99 -4.15 16.60 16 24 H -0.27 -5.97 6.66 56.52 0.38 -5.59 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.24 -5.82 6.69 56.52 0.38 -5.45 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.64 6.56 -51.93 -0.34 0.29 16 30 H 0.07 0.81 7.84 -51.92 -0.41 0.40 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 34 H 0.06 1.09 7.22 -51.93 -0.37 0.72 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 7.16 7.53 -40.82 -0.31 6.85 16 39 H 0.11 2.59 6.15 -52.49 -0.32 2.27 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.10 2.43 4.41 -52.49 -0.23 2.20 16 43 H 0.29 6.69 8.30 -40.82 -0.34 6.36 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -29.13 342.59 -7.04 -36.17 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.48 Total: 10.03 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -1.62 Total: -17.63 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.73 Total: -32.65 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.67 Total: -17.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.15 Total: 16.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.13 -7.04 -36.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344385220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.796 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds