Wall clock time and date at job start Tue Mar 31 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47662 * 2 1 4 4 H 1.09007 * 109.46966 * 305.00250 * 3 2 1 5 5 C 1.53002 * 109.47332 * 64.99390 * 3 2 1 6 6 C 1.52993 * 109.47691 * 184.99988 * 3 2 1 7 7 H 1.08997 * 109.47556 * 59.99874 * 6 3 2 8 8 O 1.42901 * 109.46957 * 299.99980 * 6 3 2 9 9 C 1.42897 * 114.00096 * 150.00285 * 8 6 3 10 10 C 1.50703 * 109.47577 * 179.97438 * 6 3 2 11 11 O 1.21278 * 120.00396 * 114.99305 * 10 6 3 12 12 N 1.34777 * 119.99699 * 295.00352 * 10 6 3 13 13 C 1.39125 * 119.99884 * 175.25657 * 12 10 6 14 14 C 1.38647 * 120.28443 * 34.21053 * 13 12 10 15 15 C 1.38220 * 120.03385 * 179.97438 * 14 13 12 16 16 C 1.38872 * 120.61681 * 0.04470 * 15 14 13 17 17 C 1.36469 * 120.57568 * 0.02562 * 16 15 14 18 18 C 1.40733 * 119.94035 * 359.65585 * 17 16 15 19 19 C 1.41076 * 120.30109 * 180.34648 * 18 17 16 20 20 H 1.08003 * 120.00043 * 148.81526 * 19 18 17 21 21 C 1.39958 * 119.99911 * 328.81019 * 19 18 17 22 22 N 1.30849 * 119.99873 * 167.53054 * 21 19 18 23 23 Si 1.86807 * 120.00052 * 347.53141 * 21 19 18 24 24 H 1.48498 * 109.47001 * 92.49307 * 23 21 19 25 25 H 1.48493 * 109.47185 * 212.49531 * 23 21 19 26 26 H 1.48503 * 109.46616 * 332.49723 * 23 21 19 27 27 H 1.09003 * 109.47536 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46801 * 60.00374 * 1 2 3 29 29 H 1.08997 * 109.47459 * 300.00333 * 1 2 3 30 30 H 1.09009 * 109.47123 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.47202 * 239.99272 * 2 1 3 32 32 H 1.09003 * 109.47195 * 300.01023 * 5 3 2 33 33 H 1.09007 * 109.46797 * 60.00155 * 5 3 2 34 34 H 1.08993 * 109.47460 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47096 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.46625 * 299.99367 * 9 8 6 37 37 H 1.08993 * 109.47598 * 59.99641 * 9 8 6 38 38 H 0.96998 * 119.99917 * 355.24940 * 12 10 6 39 39 H 1.07996 * 119.98466 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.69521 * 180.02562 * 15 14 13 41 41 H 1.07993 * 119.71343 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.02685 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8533 0.9569 -1.0570 8 8 4.1346 0.7375 0.9779 9 6 5.3745 0.0937 0.6781 10 6 4.0672 2.8650 -0.1263 11 8 4.7644 3.2622 0.7831 12 7 3.7416 3.6944 -1.1375 13 6 4.1218 5.0319 -1.0901 14 6 5.3223 5.3970 -0.5004 15 6 5.6952 6.7272 -0.4566 16 6 4.8768 7.7094 -0.9987 17 6 3.6892 7.3783 -1.5839 18 6 3.2892 6.0305 -1.6476 19 6 2.0665 5.6789 -2.2573 20 1 1.9662 4.7264 -2.7564 21 6 0.9836 6.5645 -2.2153 22 7 -0.0605 6.3577 -2.9765 23 14 1.0287 8.0417 -1.0727 24 1 1.5721 9.2154 -1.8024 25 1 -0.3464 8.3451 -0.6014 26 1 1.8963 7.7388 0.0938 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 0.5489 2.1252 1.3969 33 1 2.0698 1.5875 2.1492 34 1 1.9983 3.1543 1.3071 35 1 5.7411 -0.4206 1.5666 36 1 5.2239 -0.6294 -0.1235 37 1 6.1042 0.8393 0.3625 38 1 3.2422 3.3589 -1.8984 39 1 5.9668 4.6415 -0.0757 40 1 6.6317 7.0054 0.0038 41 1 5.1823 8.7443 -0.9561 42 1 3.0594 8.1494 -2.0024 43 1 -0.8109 6.9717 -2.9476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344385220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:40 Heat of formation + Delta-G solvation = -90.568211 kcal Electronic energy + Delta-G solvation = -24209.620269 eV Core-core repulsion = 20832.536976 eV Total energy + Delta-G solvation = -3377.083293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62830 -39.78982 -38.35430 -36.67142 -35.53948 -35.41757 -32.30782 -31.68256 -30.25774 -28.48759 -27.25171 -26.72248 -25.16602 -23.74156 -22.37681 -21.43105 -20.74896 -19.35670 -18.86997 -18.14815 -17.58840 -17.02900 -16.72006 -16.01653 -15.83656 -15.74992 -15.50498 -15.17158 -14.95757 -14.64625 -14.38939 -14.18583 -13.99665 -13.93665 -13.48585 -13.05584 -12.90965 -12.85112 -12.73872 -12.69815 -12.28407 -12.17083 -11.82371 -11.80250 -11.72642 -11.64188 -11.44858 -11.34664 -11.20963 -10.82972 -10.15523 -9.49654 -8.91466 -8.86907 -6.42914 0.64563 0.80564 1.25477 1.35956 1.47239 1.67451 2.10949 2.24667 2.64916 2.82467 3.45077 3.65347 3.71857 3.86220 4.06090 4.24921 4.29255 4.40313 4.48019 4.53592 4.60037 4.62405 4.65979 4.70544 4.77405 4.80050 4.84175 4.94150 5.01308 5.15153 5.18271 5.21910 5.23184 5.31580 5.46209 5.53935 5.59647 5.68907 5.91151 5.98378 6.05280 6.11607 6.37099 6.56966 6.81256 6.82669 7.32152 8.18877 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.006203 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.781653 B = 4512.753404 C = 5927.020672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.081 4.081 4 H 0.085 0.915 5 C -0.140 4.140 6 C 0.089 3.911 7 H 0.113 0.887 8 O -0.368 6.368 9 C 0.023 3.977 10 C 0.480 3.520 11 O -0.562 6.562 12 N -0.638 5.638 13 C 0.029 3.971 14 C -0.095 4.095 15 C -0.218 4.218 16 C -0.093 4.093 17 C -0.239 4.239 18 C 0.063 3.937 19 C -0.466 4.466 20 H 0.076 0.924 21 C 0.056 3.944 22 N -0.843 5.843 23 Si 0.952 3.048 24 H -0.258 1.258 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.411 0.589 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -11.300 2.978 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.100 4.100 4 H 0.103 0.897 5 C -0.197 4.197 6 C 0.028 3.972 7 H 0.131 0.869 8 O -0.285 6.285 9 C -0.073 4.073 10 C 0.268 3.732 11 O -0.441 6.441 12 N -0.282 5.282 13 C -0.065 4.065 14 C -0.115 4.115 15 C -0.237 4.237 16 C -0.112 4.112 17 C -0.259 4.259 18 C 0.059 3.941 19 C -0.496 4.496 20 H 0.094 0.906 21 C -0.159 4.159 22 N -0.470 5.470 23 Si 0.778 3.222 24 H -0.183 1.183 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.248 0.752 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.121 0.879 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.029 -11.081 3.698 12.068 hybrid contribution -0.243 0.880 -0.307 0.963 sum 2.786 -10.201 3.391 11.105 Atomic orbital electron populations 1.21829 0.95210 1.02318 1.01799 1.21435 0.96210 0.93300 1.03199 1.21310 0.89991 0.99400 0.99315 0.89666 1.21731 1.01657 0.98566 0.97744 1.22137 0.95294 0.87232 0.92567 0.86912 1.87953 1.37942 1.67465 1.35187 1.23036 0.84827 0.96130 1.03295 1.22082 0.80357 0.89778 0.80989 1.90611 1.38869 1.77582 1.37038 1.42984 1.55377 1.07560 1.22291 1.17837 0.96523 0.84059 1.08086 1.20975 0.94365 0.96870 0.99304 1.20748 1.01953 0.92280 1.08740 1.20724 0.94097 0.99311 0.97038 1.20828 0.99371 0.95682 1.10038 1.17741 0.92793 0.91368 0.92231 1.19172 0.94946 1.04205 1.31242 0.90585 1.26506 0.94505 0.99792 0.95058 1.69656 1.07030 1.37479 1.32834 0.85696 0.76799 0.79185 0.80470 1.18311 1.21067 1.18857 0.91189 0.93033 0.92959 0.91041 0.90377 0.91169 0.92013 0.96219 0.87912 0.91327 0.95392 0.75200 0.86798 0.85688 0.85480 0.87919 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.67 71.98 0.70 -2.27 16 2 C -0.10 -2.10 5.19 30.59 0.16 -1.94 16 3 C -0.08 -2.17 2.24 -10.80 -0.02 -2.19 16 4 H 0.09 2.38 8.09 -2.38 -0.02 2.36 16 5 C -0.14 -4.34 8.56 71.98 0.62 -3.72 16 6 C 0.09 2.52 2.26 29.85 0.07 2.58 16 7 H 0.11 2.44 7.79 -2.39 -0.02 2.43 16 8 O -0.37 -10.46 8.64 -130.00 -1.12 -11.58 16 9 C 0.02 0.50 10.81 113.37 1.23 1.72 16 10 C 0.48 18.17 5.72 87.66 0.50 18.67 16 11 O -0.56 -25.39 13.88 15.95 0.22 -25.17 16 12 N -0.64 -25.46 4.99 -302.28 -1.51 -26.97 16 13 C 0.03 1.37 6.35 38.88 0.25 1.62 16 14 C -0.09 -4.29 8.69 22.36 0.19 -4.09 16 15 C -0.22 -9.09 10.04 22.42 0.22 -8.87 16 16 C -0.09 -3.92 9.97 22.01 0.22 -3.70 16 17 C -0.24 -11.29 6.95 22.47 0.16 -11.13 16 18 C 0.06 3.11 5.14 -21.18 -0.11 3.00 16 19 C -0.47 -24.00 9.13 23.38 0.21 -23.79 16 20 H 0.08 3.96 7.08 -2.91 -0.02 3.94 16 21 C 0.06 2.88 5.47 85.26 0.47 3.35 16 22 N -0.84 -43.63 13.93 21.83 0.30 -43.33 16 23 Si 0.95 42.67 24.41 68.60 1.67 44.34 16 24 H -0.26 -10.87 6.66 99.48 0.66 -10.21 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.26 -12.62 6.69 99.48 0.67 -11.95 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.06 6.56 -2.39 -0.02 1.04 16 30 H 0.07 1.45 7.84 -2.38 -0.02 1.43 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.95 6.56 -2.39 -0.02 1.93 16 33 H 0.06 1.89 7.68 -2.38 -0.02 1.87 16 34 H 0.02 0.73 7.22 -2.39 -0.02 0.71 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.41 14.82 7.53 -92.71 -0.70 14.12 16 39 H 0.11 5.15 6.15 -2.91 -0.02 5.13 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.10 4.77 4.41 -2.91 -0.01 4.76 16 43 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -63.15 342.59 4.65 -58.50 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.23 Total: 34.98 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.85 Total: -30.77 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.20 Total: -70.30 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.90 Total: -36.75 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.67 Total: 44.34 kcal Total: -63.15 4.65 -58.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344385220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.066 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds