Wall clock time and date at job start Tue Mar 31 2020 07:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46575 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99904 * 2 1 3 5 5 O 1.42905 * 109.46984 * 65.00240 * 4 2 1 6 6 C 1.42899 * 113.99637 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46810 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47064 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99901 * 354.83564 * 8 7 6 10 10 N 1.34779 * 119.99924 * 174.84084 * 8 7 6 11 11 C 1.37137 * 120.00011 * 5.67638 * 10 8 7 12 12 H 1.08004 * 120.00273 * 55.66781 * 11 10 8 13 13 C 1.38888 * 120.00163 * 235.66946 * 11 10 8 14 14 N 1.31424 * 119.99674 * 9.24133 * 13 11 10 15 15 Si 1.86798 * 120.00391 * 189.24837 * 13 11 10 16 16 H 1.48493 * 109.47482 * 89.99650 * 15 13 11 17 17 H 1.48501 * 109.46927 * 210.00055 * 15 13 11 18 18 H 1.48497 * 109.46843 * 329.99479 * 15 13 11 19 19 C 1.39785 * 119.99708 * 185.67650 * 10 8 7 20 20 C 1.38961 * 120.07695 * 175.18919 * 19 10 8 21 21 C 1.38081 * 119.92115 * 179.97438 * 20 19 10 22 22 C 1.38303 * 120.08186 * 359.97438 * 21 20 19 23 23 C 1.38314 * 120.15389 * 359.97438 * 22 21 20 24 24 C 1.38088 * 120.07763 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47345 * 60.00266 * 1 2 3 26 26 H 1.09004 * 109.46763 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47440 * 299.99700 * 1 2 3 28 28 H 1.08999 * 109.46561 * 240.00049 * 2 1 3 29 29 H 1.09000 * 109.46435 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47067 * 299.99905 * 3 2 1 31 31 H 1.08991 * 109.47149 * 60.00299 * 3 2 1 32 32 H 1.09003 * 109.47196 * 305.00326 * 4 2 1 33 33 H 1.09001 * 109.47092 * 185.00096 * 4 2 1 34 34 H 1.08998 * 109.47350 * 60.00132 * 6 5 4 35 35 H 1.08998 * 109.47471 * 299.99963 * 6 5 4 36 36 H 1.09000 * 109.47496 * 60.00084 * 7 6 5 37 37 H 1.09001 * 109.47637 * 300.00125 * 7 6 5 38 38 H 0.97001 * 120.00283 * 184.98362 * 14 13 11 39 39 H 1.07998 * 120.03859 * 359.70541 * 20 19 10 40 40 H 1.08007 * 119.95632 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.92309 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.95926 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.03890 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1920 6 6 2.0924 -2.8663 2.3175 7 6 1.6344 -4.3165 2.1504 8 6 2.0877 -5.1265 3.3377 9 8 2.7944 -4.6198 4.1832 10 7 1.7080 -6.4139 3.4597 11 6 1.0076 -7.0210 2.4491 12 1 1.4113 -7.0395 1.4475 13 6 -0.2212 -7.6120 2.7134 14 7 -0.7977 -7.4352 3.8811 15 14 -1.0543 -8.6583 1.4093 16 1 -0.6224 -10.0712 1.5579 17 1 -2.5278 -8.5713 1.5718 18 1 -0.6750 -8.1639 0.0614 19 6 2.0282 -7.1303 4.6166 20 6 1.5528 -8.4247 4.7881 21 6 1.8715 -9.1296 5.9318 22 6 2.6633 -8.5491 6.9059 23 6 3.1391 -7.2612 6.7381 24 6 2.8244 -6.5504 5.5968 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 1.6593 -2.4514 3.2276 35 1 3.1798 -2.8338 2.3852 36 1 2.0672 -4.7317 1.2402 37 1 0.5469 -4.3487 2.0830 38 1 -1.6194 -7.9054 4.0925 39 1 0.9312 -8.8773 4.0297 40 1 1.5020 -10.1356 6.0659 41 1 2.9107 -9.1026 7.7996 42 1 3.7575 -6.8111 7.5005 43 1 3.1959 -5.5447 5.4666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345180653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:11 Heat of formation + Delta-G solvation = -53.348130 kcal Electronic energy + Delta-G solvation = -23211.096022 eV Core-core repulsion = 19835.626713 eV Total energy + Delta-G solvation = -3375.469309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76565 -38.15680 -37.20077 -35.13859 -34.96847 -31.98203 -31.14711 -29.61302 -28.56171 -27.21608 -25.93284 -25.21032 -23.34579 -21.52594 -20.95872 -20.25784 -19.29132 -17.70237 -16.75246 -16.14785 -15.77115 -15.53089 -15.15020 -14.84309 -14.58980 -14.29018 -13.99600 -13.44309 -13.16605 -13.00249 -12.72266 -12.63146 -12.54914 -12.26606 -12.17044 -11.81106 -11.57227 -11.27512 -11.19768 -11.12153 -11.05880 -10.85635 -10.80179 -10.64554 -10.52890 -10.45655 -10.04046 -9.31599 -9.23458 -8.75899 -8.16936 -7.80006 -6.89385 -6.32707 -4.56185 2.40788 2.56233 3.04054 3.12672 3.14884 3.63000 3.79077 3.97917 4.62616 4.74635 4.81072 4.88188 5.12008 5.14811 5.43407 5.47473 5.49814 5.55949 5.61657 5.69647 5.78346 5.85034 5.87741 5.88530 5.97563 5.98995 6.13153 6.17133 6.23872 6.33100 6.43761 6.54930 6.70927 6.73976 6.92561 7.14505 7.24525 7.47657 7.51472 7.61232 7.68895 7.77008 8.06466 8.42138 8.83087 9.21230 9.59699 10.46456 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.004229 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.336812 B = 6620.042249 C = 8135.594501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.389 6.389 6 C 0.079 3.921 7 C -0.114 4.114 8 C 0.498 3.502 9 O -0.571 6.571 10 N -0.382 5.382 11 C -0.369 4.369 12 H 0.095 0.905 13 C 0.056 3.944 14 N -0.841 5.841 15 Si 0.915 3.085 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.264 1.264 19 C 0.183 3.817 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.174 4.174 23 C -0.121 4.121 24 C -0.193 4.193 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.275 0.725 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 8.069 -4.641 9.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.309 6.309 6 C 0.003 3.997 7 C -0.153 4.153 8 C 0.290 3.710 9 O -0.457 6.457 10 N -0.089 5.089 11 C -0.496 4.496 12 H 0.112 0.888 13 C -0.153 4.153 14 N -0.473 5.473 15 Si 0.740 3.260 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 C 0.086 3.914 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.193 4.193 23 C -0.140 4.140 24 C -0.212 4.212 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.496 8.288 -4.376 9.699 hybrid contribution -0.615 -0.717 -0.201 0.965 sum 1.881 7.571 -4.577 9.044 Atomic orbital electron populations 1.21789 0.94605 1.02724 1.01085 1.21099 0.96804 0.95399 0.98134 1.21785 1.00992 0.95480 1.02021 1.22504 0.98212 0.82561 0.97677 1.87809 1.78970 1.19818 1.44271 1.22210 0.98591 0.91086 0.87852 1.21140 1.04178 0.92050 0.97979 1.20679 0.81159 0.82050 0.87086 1.90174 1.40638 1.71410 1.43437 1.40959 1.45791 1.07507 1.14610 1.19358 1.00344 1.39519 0.90406 0.88781 1.25622 0.95512 0.97172 0.97031 1.70035 1.18069 1.37482 1.21741 0.86109 0.78589 0.80174 0.81129 1.19764 1.20533 1.18808 1.18297 0.93617 0.91358 0.88079 1.21040 0.99480 0.93837 0.98259 1.20771 0.99681 0.99001 0.94828 1.20791 1.02724 0.96418 0.99366 1.20870 1.00874 0.94696 0.97552 1.22802 1.00855 1.03932 0.93644 0.93061 0.91534 0.92992 0.90435 0.92604 0.92215 0.92568 0.93566 0.93648 0.93050 0.92946 0.88961 0.88048 0.91477 0.85064 0.87784 0.88189 0.87742 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.09 37.16 0.34 -1.23 16 2 C -0.10 -1.04 3.16 -90.62 -0.29 -1.32 16 3 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 4 C 0.07 0.86 5.32 37.16 0.20 1.06 16 5 O -0.39 -6.28 9.88 -35.23 -0.35 -6.63 16 6 C 0.08 1.38 5.24 37.16 0.19 1.58 16 7 C -0.11 -2.24 4.89 -27.88 -0.14 -2.37 16 8 C 0.50 11.66 7.57 -10.98 -0.08 11.58 16 9 O -0.57 -13.86 12.37 5.56 0.07 -13.79 16 10 N -0.38 -9.56 2.62 -58.98 -0.15 -9.72 16 11 C -0.37 -9.01 7.61 -14.94 -0.11 -9.13 16 12 H 0.09 2.19 7.85 -52.48 -0.41 1.78 16 13 C 0.06 1.36 3.49 -17.49 -0.06 1.30 16 14 N -0.84 -21.73 11.39 55.49 0.63 -21.10 16 15 Si 0.92 18.56 29.57 -169.99 -5.03 13.54 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 C 0.18 4.63 6.05 -83.70 -0.51 4.12 16 20 C -0.11 -2.54 7.87 -39.37 -0.31 -2.85 16 21 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 22 C -0.17 -3.48 10.04 -39.53 -0.40 -3.88 16 23 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 24 C -0.19 -4.60 9.06 -39.37 -0.36 -4.96 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.10 2.07 8.04 -51.93 -0.42 1.66 16 38 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 39 H 0.13 3.27 5.15 -52.49 -0.27 3.00 16 40 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.18 4.27 4.50 -56.37 -0.25 4.02 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -27.59 351.14 -8.32 -35.91 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.81 Total: 9.45 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.97 Total: -12.96 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.48 Total: -30.81 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.28 Total: -20.42 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.59 -8.32 -35.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345180653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.436 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds