Wall clock time and date at job start Tue Mar 31 2020 07:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46575 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99904 * 2 1 3 5 5 O 1.42905 * 109.46984 * 65.00240 * 4 2 1 6 6 C 1.42899 * 113.99637 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46810 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47064 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99901 * 354.83564 * 8 7 6 10 10 N 1.34779 * 119.99924 * 174.84084 * 8 7 6 11 11 C 1.37137 * 120.00011 * 5.67638 * 10 8 7 12 12 H 1.08004 * 120.00273 * 55.66781 * 11 10 8 13 13 C 1.38888 * 120.00163 * 235.66946 * 11 10 8 14 14 N 1.31424 * 119.99674 * 9.24133 * 13 11 10 15 15 Si 1.86798 * 120.00391 * 189.24837 * 13 11 10 16 16 H 1.48493 * 109.47482 * 89.99650 * 15 13 11 17 17 H 1.48501 * 109.46927 * 210.00055 * 15 13 11 18 18 H 1.48497 * 109.46843 * 329.99479 * 15 13 11 19 19 C 1.39785 * 119.99708 * 185.67650 * 10 8 7 20 20 C 1.38961 * 120.07695 * 175.18919 * 19 10 8 21 21 C 1.38081 * 119.92115 * 179.97438 * 20 19 10 22 22 C 1.38303 * 120.08186 * 359.97438 * 21 20 19 23 23 C 1.38314 * 120.15389 * 359.97438 * 22 21 20 24 24 C 1.38088 * 120.07763 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47345 * 60.00266 * 1 2 3 26 26 H 1.09004 * 109.46763 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47440 * 299.99700 * 1 2 3 28 28 H 1.08999 * 109.46561 * 240.00049 * 2 1 3 29 29 H 1.09000 * 109.46435 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47067 * 299.99905 * 3 2 1 31 31 H 1.08991 * 109.47149 * 60.00299 * 3 2 1 32 32 H 1.09003 * 109.47196 * 305.00326 * 4 2 1 33 33 H 1.09001 * 109.47092 * 185.00096 * 4 2 1 34 34 H 1.08998 * 109.47350 * 60.00132 * 6 5 4 35 35 H 1.08998 * 109.47471 * 299.99963 * 6 5 4 36 36 H 1.09000 * 109.47496 * 60.00084 * 7 6 5 37 37 H 1.09001 * 109.47637 * 300.00125 * 7 6 5 38 38 H 0.97001 * 120.00283 * 184.98362 * 14 13 11 39 39 H 1.07998 * 120.03859 * 359.70541 * 20 19 10 40 40 H 1.08007 * 119.95632 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.92309 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.95926 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.03890 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1920 6 6 2.0924 -2.8663 2.3175 7 6 1.6344 -4.3165 2.1504 8 6 2.0877 -5.1265 3.3377 9 8 2.7944 -4.6198 4.1832 10 7 1.7080 -6.4139 3.4597 11 6 1.0076 -7.0210 2.4491 12 1 1.4113 -7.0395 1.4475 13 6 -0.2212 -7.6120 2.7134 14 7 -0.7977 -7.4352 3.8811 15 14 -1.0543 -8.6583 1.4093 16 1 -0.6224 -10.0712 1.5579 17 1 -2.5278 -8.5713 1.5718 18 1 -0.6750 -8.1639 0.0614 19 6 2.0282 -7.1303 4.6166 20 6 1.5528 -8.4247 4.7881 21 6 1.8715 -9.1296 5.9318 22 6 2.6633 -8.5491 6.9059 23 6 3.1391 -7.2612 6.7381 24 6 2.8244 -6.5504 5.5968 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 1.6593 -2.4514 3.2276 35 1 3.1798 -2.8338 2.3852 36 1 2.0672 -4.7317 1.2402 37 1 0.5469 -4.3487 2.0830 38 1 -1.6194 -7.9054 4.0925 39 1 0.9312 -8.8773 4.0297 40 1 1.5020 -10.1356 6.0659 41 1 2.9107 -9.1026 7.7996 42 1 3.7575 -6.8111 7.5005 43 1 3.1959 -5.5447 5.4666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345180653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:10 Heat of formation + Delta-G solvation = -66.614744 kcal Electronic energy + Delta-G solvation = -23211.671306 eV Core-core repulsion = 19835.626713 eV Total energy + Delta-G solvation = -3376.044593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55135 -39.45181 -38.82243 -36.86505 -36.05441 -33.84084 -32.69014 -31.33926 -30.23570 -28.00058 -27.20006 -26.86836 -24.87476 -23.24090 -22.62809 -21.32605 -20.94028 -19.46240 -18.28898 -17.53690 -17.33679 -17.15414 -16.79977 -16.25412 -15.96478 -15.75684 -15.30447 -15.04904 -14.76962 -14.46692 -14.22583 -13.99440 -13.78267 -13.69685 -13.35331 -13.24782 -13.03832 -12.95982 -12.82533 -12.49890 -12.35624 -12.25935 -12.09406 -11.90529 -11.74675 -11.71409 -11.49111 -11.04541 -10.57091 -10.56294 -9.97532 -9.53835 -8.72433 -8.14974 -6.46467 0.66988 0.81175 1.42449 1.45457 1.56385 1.93373 2.21604 2.40977 2.90828 3.11949 3.35276 3.91663 3.95447 3.99998 4.10796 4.17945 4.30063 4.32374 4.39797 4.50506 4.58484 4.59600 4.64213 4.77876 4.82999 4.88357 4.92428 4.96385 5.01143 5.02651 5.06367 5.18982 5.22872 5.36874 5.41542 5.42853 5.45510 5.79619 5.88374 5.89517 6.03721 6.23450 6.24483 6.61425 6.97500 7.38427 7.76148 8.63617 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.004229 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.336812 B = 6620.042249 C = 8135.594501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.058 3.942 5 O -0.400 6.400 6 C 0.093 3.907 7 C -0.103 4.103 8 C 0.484 3.516 9 O -0.586 6.586 10 N -0.396 5.396 11 C -0.382 4.382 12 H 0.100 0.900 13 C 0.023 3.977 14 N -0.877 5.877 15 Si 0.980 3.020 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.254 1.254 19 C 0.150 3.850 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.165 4.165 23 C -0.120 4.120 24 C -0.217 4.217 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.275 0.725 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 7.935 -4.745 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.198 4.198 4 C -0.018 4.018 5 O -0.320 6.320 6 C 0.016 3.984 7 C -0.142 4.142 8 C 0.277 3.723 9 O -0.473 6.473 10 N -0.103 5.103 11 C -0.509 4.509 12 H 0.117 0.883 13 C -0.183 4.183 14 N -0.510 5.510 15 Si 0.802 3.198 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.178 1.178 19 C 0.053 3.947 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.184 4.184 23 C -0.138 4.138 24 C -0.237 4.237 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.824 8.164 -4.488 9.734 hybrid contribution -0.660 -0.663 -0.092 0.940 sum 2.164 7.501 -4.580 9.051 Atomic orbital electron populations 1.21786 0.94764 1.01517 1.02100 1.21136 0.96688 0.96657 0.96805 1.21755 1.01418 0.93669 1.02920 1.22804 0.99068 0.80881 0.99070 1.87792 1.79222 1.21537 1.43463 1.21947 0.98472 0.89939 0.88063 1.21041 1.03287 0.93113 0.96806 1.21279 0.80963 0.82080 0.87968 1.90153 1.41287 1.71660 1.44206 1.41211 1.46088 1.08120 1.14896 1.19644 1.00733 1.39821 0.90653 0.88276 1.26355 0.95614 0.97741 0.98630 1.70146 1.18514 1.38580 1.23723 0.85131 0.77136 0.78586 0.78967 1.19264 1.20716 1.17772 1.18678 0.94893 0.92278 0.88805 1.21077 1.00322 0.93960 0.99414 1.21157 0.99179 1.00095 0.93907 1.21232 1.00947 0.96027 1.00145 1.21255 1.00470 0.95085 0.97012 1.22842 1.01807 1.04047 0.94960 0.91334 0.93810 0.92729 0.90776 0.91940 0.90853 0.92148 0.93226 0.92637 0.93877 0.92667 0.87958 0.89173 0.91549 0.86540 0.84930 0.83968 0.84582 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.09 71.98 0.65 -2.35 16 2 C -0.09 -1.93 3.16 -10.79 -0.03 -1.96 16 3 C -0.14 -2.08 9.19 71.98 0.66 -1.42 16 4 C 0.06 1.45 5.32 71.98 0.38 1.83 16 5 O -0.40 -12.93 9.88 -148.98 -1.47 -14.41 16 6 C 0.09 3.29 5.24 71.98 0.38 3.67 16 7 C -0.10 -4.16 4.89 29.85 0.15 -4.02 16 8 C 0.48 23.48 7.57 87.66 0.66 24.14 16 9 O -0.59 -29.47 12.37 -3.03 -0.04 -29.50 16 10 N -0.40 -20.46 2.62 -458.89 -1.20 -21.67 16 11 C -0.38 -19.07 7.61 84.02 0.64 -18.43 16 12 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 13 C 0.02 1.13 3.49 84.91 0.30 1.42 16 14 N -0.88 -46.25 11.39 21.65 0.25 -46.00 16 15 Si 0.98 38.18 29.57 68.60 2.03 40.20 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 19 C 0.15 7.75 6.05 38.22 0.23 7.98 16 20 C -0.13 -6.17 7.87 22.41 0.18 -6.00 16 21 C -0.12 -5.09 10.04 22.25 0.22 -4.87 16 22 C -0.16 -6.12 10.04 22.30 0.22 -5.90 16 23 C -0.12 -4.82 10.04 22.25 0.22 -4.60 16 24 C -0.22 -10.48 9.06 22.41 0.20 -10.28 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.10 7.82 -2.38 -0.02 1.08 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.91 8.04 -2.39 -0.02 1.90 16 36 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.09 3.83 8.04 -2.39 -0.02 3.81 16 38 H 0.27 13.70 8.32 -92.71 -0.77 12.93 16 39 H 0.12 5.92 5.15 -2.91 -0.02 5.90 16 40 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.16 8.17 4.50 -64.42 -0.29 7.88 16 Total: -1.00 -60.52 351.14 5.33 -55.19 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.70 Total: 36.97 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.07 Total: -20.78 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.96 Total: -67.67 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.51 Total: -43.91 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -60.52 5.33 -55.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345180653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.427 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds