Wall clock time and date at job start Tue Mar 31 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 H 1.09010 * 109.47351 * 305.74105 * 3 2 1 5 5 C 1.53001 * 109.47088 * 65.73679 * 3 2 1 6 6 C 1.53001 * 109.47510 * 185.74256 * 3 2 1 7 7 H 1.09000 * 109.47407 * 185.60080 * 6 3 2 8 8 O 1.42898 * 109.46553 * 305.59989 * 6 3 2 9 9 C 1.42903 * 114.00111 * 245.88924 * 8 6 3 10 10 C 1.50700 * 109.47182 * 65.59592 * 6 3 2 11 11 O 1.21281 * 120.00138 * 246.14000 * 10 6 3 12 12 N 1.34776 * 119.99794 * 66.13812 * 10 6 3 13 13 C 1.39231 * 119.99979 * 185.26070 * 12 10 6 14 14 C 1.39485 * 119.83149 * 33.64649 * 13 12 10 15 15 C 1.36382 * 120.16736 * 179.71418 * 14 13 12 16 16 C 1.40869 * 119.82631 * 0.57796 * 15 14 13 17 17 C 1.41155 * 120.16250 * 179.67948 * 16 15 14 18 18 H 1.08000 * 119.99797 * 208.86308 * 17 16 15 19 19 C 1.39900 * 120.00033 * 28.85787 * 17 16 15 20 20 N 1.30872 * 120.00058 * 10.82074 * 19 17 16 21 21 Si 1.86802 * 120.00096 * 190.81570 * 19 17 16 22 22 H 1.48501 * 109.46962 * 59.99855 * 21 19 17 23 23 H 1.48497 * 109.47443 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46965 * 300.00310 * 21 19 17 25 25 C 1.40867 * 119.67147 * 359.69503 * 16 15 14 26 26 C 1.36373 * 119.83318 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47312 * 59.99940 * 1 2 3 28 28 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47117 * 299.99618 * 1 2 3 30 30 H 1.09001 * 109.47117 * 240.00381 * 2 1 3 31 31 H 1.09000 * 109.47804 * 119.99901 * 2 1 3 32 32 H 1.09004 * 109.46863 * 54.41566 * 5 3 2 33 33 H 1.08998 * 109.47209 * 174.40481 * 5 3 2 34 34 H 1.08997 * 109.47710 * 294.41244 * 5 3 2 35 35 H 1.09002 * 109.47224 * 184.98681 * 9 8 6 36 36 H 1.09002 * 109.47124 * 304.98631 * 9 8 6 37 37 H 1.09004 * 109.47094 * 64.98291 * 9 8 6 38 38 H 0.97003 * 119.99754 * 5.27064 * 12 10 6 39 39 H 1.07992 * 119.91814 * 0.02562 * 14 13 12 40 40 H 1.07992 * 120.08505 * 180.25503 * 15 14 13 41 41 H 0.97001 * 119.99918 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.08145 * 179.97438 * 25 16 15 43 43 H 1.07995 * 119.91947 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 6 1.6511 2.1209 1.3151 6 6 3.5631 1.4451 -0.1443 7 1 3.9359 2.4645 -0.0447 8 8 4.1394 0.6254 0.8746 9 6 4.9277 1.3463 1.8238 10 6 3.9403 0.9023 -1.4987 11 8 4.5392 -0.1487 -1.5855 12 7 3.6120 1.5850 -2.6134 13 6 3.8621 1.0328 -3.8669 14 6 3.7677 -0.3469 -4.0487 15 6 4.0055 -0.8945 -5.2749 16 6 4.3593 -0.0641 -6.3564 17 6 4.6136 -0.6240 -7.6269 18 1 5.2992 -0.1366 -8.3044 19 6 3.9778 -1.8102 -8.0086 20 7 2.9957 -2.2876 -7.2873 21 14 4.5305 -2.7128 -9.5479 22 1 5.9577 -3.0991 -9.4096 23 1 3.7026 -3.9319 -9.7311 24 1 4.3702 -1.8244 -10.7270 25 6 4.4582 1.3278 -6.1635 26 6 4.2118 1.8614 -4.9330 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0120 1.5238 2.1525 33 1 2.0983 3.1140 1.3578 34 1 0.5661 2.2083 1.3720 35 1 5.4011 0.6446 2.5106 36 1 5.6955 1.9162 1.3003 37 1 4.2881 2.0280 2.3844 38 1 3.2016 2.4610 -2.5425 39 1 3.5006 -0.9827 -3.2176 40 1 3.9280 -1.9625 -5.4151 41 1 2.5551 -3.1103 -7.5517 42 1 4.7293 1.9707 -6.9880 43 1 4.2877 2.9283 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353675411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:47 Heat of formation + Delta-G solvation = -74.633136 kcal Electronic energy + Delta-G solvation = -23476.985524 eV Core-core repulsion = 20100.593228 eV Total energy + Delta-G solvation = -3376.392296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14225 -38.22031 -36.85662 -35.55403 -34.36858 -32.89688 -30.39844 -29.50236 -29.09006 -28.03637 -26.09561 -24.73041 -23.66953 -21.55259 -21.04765 -20.30207 -19.32733 -17.42724 -17.25315 -16.72387 -16.03976 -15.67597 -15.20871 -14.85637 -14.52592 -14.14814 -13.90859 -13.88501 -13.37775 -13.01456 -12.81896 -12.52517 -12.37397 -12.18421 -12.00588 -11.79678 -11.74659 -11.50399 -11.34459 -11.12383 -11.08987 -11.05213 -10.68106 -10.59575 -10.55849 -10.03651 -9.81963 -9.56055 -9.31148 -9.00594 -8.73110 -7.50887 -6.92302 -6.66430 -4.29476 2.56926 3.02348 3.09245 3.11699 3.13048 3.32377 3.39663 3.96926 4.07891 4.58982 4.67496 4.74757 4.88510 5.04192 5.14160 5.24975 5.29483 5.45523 5.47464 5.51561 5.55958 5.62039 5.72166 5.83256 5.92172 5.97183 6.14780 6.17091 6.32367 6.39624 6.47109 6.80745 6.93500 7.05529 7.06991 7.19997 7.30672 7.61717 7.70674 7.98302 8.07898 8.22949 8.33984 8.65564 8.80372 8.91753 9.02628 10.25882 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003581 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.170014 B = 7817.778196 C = 8161.675098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.097 4.097 4 H 0.083 0.917 5 C -0.146 4.146 6 C 0.078 3.922 7 H 0.082 0.918 8 O -0.351 6.351 9 C 0.028 3.972 10 C 0.490 3.510 11 O -0.510 6.510 12 N -0.651 5.651 13 C 0.002 3.998 14 C -0.088 4.088 15 C -0.147 4.147 16 C 0.105 3.895 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.800 5.800 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.211 4.211 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.392 0.608 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.280 0.720 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 8.298 14.380 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.203 4.203 6 C 0.016 3.984 7 H 0.100 0.900 8 O -0.268 6.268 9 C -0.069 4.069 10 C 0.275 3.725 11 O -0.384 6.384 12 N -0.296 5.296 13 C -0.090 4.090 14 C -0.108 4.108 15 C -0.167 4.167 16 C 0.102 3.898 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.426 5.426 21 Si 0.736 3.264 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.231 4.231 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.226 0.774 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.133 7.110 14.374 16.339 hybrid contribution 0.038 0.391 -0.672 0.778 sum -3.095 7.501 13.702 15.924 Atomic orbital electron populations 1.21812 0.95962 1.01654 1.01414 1.21454 0.95338 0.95173 1.03326 1.21514 0.92506 0.98362 0.99254 0.89845 1.21870 1.01666 0.99716 0.97039 1.22106 0.94348 0.94540 0.87381 0.89980 1.88032 1.67081 1.33242 1.38441 1.22917 0.94309 0.97395 0.92274 1.20642 0.80171 0.86131 0.85543 1.90716 1.38694 1.22414 1.86556 1.42976 1.61053 1.20830 1.04740 1.17183 1.15219 0.93062 0.83583 1.20441 1.00484 0.92697 0.97201 1.21044 1.04721 1.00207 0.90755 1.17669 0.88667 0.90488 0.92962 1.19502 1.23216 1.06058 1.00269 0.90547 1.25896 0.93407 0.96687 0.98434 1.69805 1.16492 1.19138 1.37123 0.86319 0.79749 0.78870 0.81451 1.18902 1.20360 1.19096 1.20583 1.11819 0.95052 0.95692 1.20027 1.02613 0.96694 0.93542 0.92792 0.92778 0.92893 0.91523 0.91094 0.92079 0.92984 0.91981 0.89465 0.94011 0.94046 0.77446 0.88048 0.86007 0.90885 0.88615 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.68 37.16 0.36 -1.31 16 2 C -0.12 -1.52 5.00 -26.73 -0.13 -1.65 16 3 C -0.10 -1.10 2.19 -90.62 -0.20 -1.30 16 4 H 0.08 0.89 8.04 -51.92 -0.42 0.47 16 5 C -0.15 -1.26 8.44 37.16 0.31 -0.94 16 6 C 0.08 1.03 2.33 -27.88 -0.06 0.97 16 7 H 0.08 0.86 7.59 -51.93 -0.39 0.46 16 8 O -0.35 -4.99 8.76 -55.07 -0.48 -5.48 16 9 C 0.03 0.28 10.73 101.05 1.08 1.36 16 10 C 0.49 8.87 5.81 -10.99 -0.06 8.81 16 11 O -0.51 -11.75 14.18 -14.28 -0.20 -11.95 16 12 N -0.65 -11.51 5.22 -9.74 -0.05 -11.57 16 13 C 0.00 0.04 6.28 -83.57 -0.53 -0.49 16 14 C -0.09 -2.23 8.57 -39.79 -0.34 -2.57 16 15 C -0.15 -4.01 8.60 -39.26 -0.34 -4.34 16 16 C 0.10 2.84 5.55 -106.80 -0.59 2.24 16 17 C -0.46 -12.36 9.05 -37.85 -0.34 -12.70 16 18 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 19 C 0.07 1.85 5.25 -17.34 -0.09 1.76 16 20 N -0.80 -21.10 10.84 55.55 0.60 -20.49 16 21 Si 0.91 19.02 29.57 -169.99 -5.03 13.99 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 26 C -0.11 -2.39 9.89 -39.79 -0.39 -2.78 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.49 6.72 -51.93 -0.35 0.14 16 30 H 0.07 1.10 7.23 -51.93 -0.38 0.73 16 31 H 0.07 0.96 7.74 -51.93 -0.40 0.55 16 32 H 0.06 0.55 7.78 -51.93 -0.40 0.14 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.04 0.32 7.71 -51.93 -0.40 -0.08 16 38 H 0.39 5.34 8.79 -40.82 -0.36 4.98 16 39 H 0.10 2.60 6.41 -52.49 -0.34 2.26 16 40 H 0.12 3.45 6.22 -52.49 -0.33 3.12 16 41 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 42 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -31.38 351.05 -8.20 -39.59 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.62 Total: 9.11 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.71 Total: -18.49 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.55 Total: -32.06 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.68 Total: -17.43 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.38 -8.20 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.045 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds