Wall clock time and date at job start Tue Mar 31 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 H 1.09010 * 109.47351 * 305.74105 * 3 2 1 5 5 C 1.53001 * 109.47088 * 65.73679 * 3 2 1 6 6 C 1.53001 * 109.47510 * 185.74256 * 3 2 1 7 7 H 1.09000 * 109.47407 * 185.60080 * 6 3 2 8 8 O 1.42898 * 109.46553 * 305.59989 * 6 3 2 9 9 C 1.42903 * 114.00111 * 245.88924 * 8 6 3 10 10 C 1.50700 * 109.47182 * 65.59592 * 6 3 2 11 11 O 1.21281 * 120.00138 * 246.14000 * 10 6 3 12 12 N 1.34776 * 119.99794 * 66.13812 * 10 6 3 13 13 C 1.39231 * 119.99979 * 185.26070 * 12 10 6 14 14 C 1.39485 * 119.83149 * 33.64649 * 13 12 10 15 15 C 1.36382 * 120.16736 * 179.71418 * 14 13 12 16 16 C 1.40869 * 119.82631 * 0.57796 * 15 14 13 17 17 C 1.41155 * 120.16250 * 179.67948 * 16 15 14 18 18 H 1.08000 * 119.99797 * 208.86308 * 17 16 15 19 19 C 1.39900 * 120.00033 * 28.85787 * 17 16 15 20 20 N 1.30872 * 120.00058 * 10.82074 * 19 17 16 21 21 Si 1.86802 * 120.00096 * 190.81570 * 19 17 16 22 22 H 1.48501 * 109.46962 * 59.99855 * 21 19 17 23 23 H 1.48497 * 109.47443 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46965 * 300.00310 * 21 19 17 25 25 C 1.40867 * 119.67147 * 359.69503 * 16 15 14 26 26 C 1.36373 * 119.83318 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47312 * 59.99940 * 1 2 3 28 28 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47117 * 299.99618 * 1 2 3 30 30 H 1.09001 * 109.47117 * 240.00381 * 2 1 3 31 31 H 1.09000 * 109.47804 * 119.99901 * 2 1 3 32 32 H 1.09004 * 109.46863 * 54.41566 * 5 3 2 33 33 H 1.08998 * 109.47209 * 174.40481 * 5 3 2 34 34 H 1.08997 * 109.47710 * 294.41244 * 5 3 2 35 35 H 1.09002 * 109.47224 * 184.98681 * 9 8 6 36 36 H 1.09002 * 109.47124 * 304.98631 * 9 8 6 37 37 H 1.09004 * 109.47094 * 64.98291 * 9 8 6 38 38 H 0.97003 * 119.99754 * 5.27064 * 12 10 6 39 39 H 1.07992 * 119.91814 * 0.02562 * 14 13 12 40 40 H 1.07992 * 120.08505 * 180.25503 * 15 14 13 41 41 H 0.97001 * 119.99918 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.08145 * 179.97438 * 25 16 15 43 43 H 1.07995 * 119.91947 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 6 1.6511 2.1209 1.3151 6 6 3.5631 1.4451 -0.1443 7 1 3.9359 2.4645 -0.0447 8 8 4.1394 0.6254 0.8746 9 6 4.9277 1.3463 1.8238 10 6 3.9403 0.9023 -1.4987 11 8 4.5392 -0.1487 -1.5855 12 7 3.6120 1.5850 -2.6134 13 6 3.8621 1.0328 -3.8669 14 6 3.7677 -0.3469 -4.0487 15 6 4.0055 -0.8945 -5.2749 16 6 4.3593 -0.0641 -6.3564 17 6 4.6136 -0.6240 -7.6269 18 1 5.2992 -0.1366 -8.3044 19 6 3.9778 -1.8102 -8.0086 20 7 2.9957 -2.2876 -7.2873 21 14 4.5305 -2.7128 -9.5479 22 1 5.9577 -3.0991 -9.4096 23 1 3.7026 -3.9319 -9.7311 24 1 4.3702 -1.8244 -10.7270 25 6 4.4582 1.3278 -6.1635 26 6 4.2118 1.8614 -4.9330 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0120 1.5238 2.1525 33 1 2.0983 3.1140 1.3578 34 1 0.5661 2.2083 1.3720 35 1 5.4011 0.6446 2.5106 36 1 5.6955 1.9162 1.3003 37 1 4.2881 2.0280 2.3844 38 1 3.2016 2.4610 -2.5425 39 1 3.5006 -0.9827 -3.2176 40 1 3.9280 -1.9625 -5.4151 41 1 2.5551 -3.1103 -7.5517 42 1 4.7293 1.9707 -6.9880 43 1 4.2877 2.9283 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353675411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:47 Heat of formation + Delta-G solvation = -93.317225 kcal Electronic energy + Delta-G solvation = -23477.795727 eV Core-core repulsion = 20100.593228 eV Total energy + Delta-G solvation = -3377.202499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53879 -39.66952 -38.45616 -36.54664 -36.10185 -34.69014 -31.66301 -31.34697 -30.65002 -29.06802 -27.25540 -26.22688 -24.73746 -23.33231 -22.81641 -21.57985 -20.66515 -19.25829 -18.82088 -18.00602 -17.24032 -17.13047 -16.70866 -16.08003 -15.76642 -15.72524 -15.41291 -14.91042 -14.79587 -14.48109 -14.15591 -13.99558 -13.68171 -13.57716 -13.36507 -13.26943 -12.90557 -12.87711 -12.78376 -12.61860 -12.41775 -12.31186 -11.99227 -11.72931 -11.61217 -11.53975 -11.42705 -11.18952 -11.03771 -10.73805 -10.20197 -9.46695 -8.81387 -8.56239 -6.30057 0.79100 1.12514 1.37745 1.45004 1.50501 1.79571 2.09611 2.21690 2.77571 3.00687 3.64425 3.70851 3.72078 3.88704 4.08142 4.19952 4.42188 4.44341 4.48161 4.53159 4.61618 4.64607 4.66230 4.79731 4.85935 4.95798 5.07759 5.09131 5.09955 5.16913 5.17833 5.22639 5.29862 5.42196 5.46808 5.49462 5.66866 5.83510 6.06283 6.09719 6.14062 6.34042 6.67719 6.74353 6.93134 7.00153 7.41504 8.37467 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003581 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.170014 B = 7817.778196 C = 8161.675098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.093 4.093 4 H 0.094 0.906 5 C -0.139 4.139 6 C 0.087 3.913 7 H 0.122 0.878 8 O -0.382 6.382 9 C 0.020 3.980 10 C 0.486 3.514 11 O -0.567 6.567 12 N -0.640 5.640 13 C 0.015 3.985 14 C -0.103 4.103 15 C -0.173 4.173 16 C 0.072 3.928 17 C -0.497 4.497 18 H 0.081 0.919 19 C 0.028 3.972 20 N -0.836 5.836 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.218 4.218 26 C -0.101 4.101 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.417 0.583 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.285 0.715 42 H 0.113 0.887 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 11.292 15.537 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.112 4.112 4 H 0.112 0.888 5 C -0.196 4.196 6 C 0.026 3.974 7 H 0.140 0.860 8 O -0.300 6.300 9 C -0.076 4.076 10 C 0.274 3.726 11 O -0.445 6.445 12 N -0.287 5.287 13 C -0.079 4.079 14 C -0.123 4.123 15 C -0.194 4.194 16 C 0.070 3.930 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.185 4.185 20 N -0.462 5.462 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.238 4.238 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.574 10.163 15.565 18.930 hybrid contribution 0.177 -0.484 -0.852 0.996 sum -3.397 9.679 14.713 17.936 Atomic orbital electron populations 1.21783 0.94244 1.01745 1.02589 1.21413 0.96856 0.96408 1.00601 1.21552 0.90867 0.97151 1.01655 0.88801 1.21834 1.02675 1.00411 0.94681 1.22166 0.95635 0.95605 0.83998 0.86012 1.88013 1.67735 1.35118 1.39110 1.23160 0.94646 0.97949 0.91834 1.21762 0.78431 0.85085 0.87351 1.90695 1.41232 1.25002 1.87547 1.42878 1.60960 1.21783 1.03095 1.17261 1.12795 0.91995 0.85810 1.20432 1.01392 0.94459 0.96039 1.20907 1.07140 0.99284 0.92029 1.17999 0.89889 0.92001 0.93144 1.19798 1.24460 1.07722 1.00694 0.90124 1.26814 0.92926 0.97012 1.01764 1.69898 1.17597 1.19723 1.39023 0.85192 0.79135 0.77685 0.77309 1.18684 1.19488 1.17887 1.20881 1.11332 0.94171 0.97391 1.20413 1.00610 0.98962 0.92140 0.92850 0.93395 0.90311 0.96178 0.91936 0.92366 0.90588 0.90722 0.88927 0.93657 0.91073 0.74490 0.89625 0.88633 0.90432 0.86921 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.68 71.98 0.70 -2.37 16 2 C -0.12 -3.01 5.00 30.59 0.15 -2.86 16 3 C -0.09 -1.87 2.19 -10.79 -0.02 -1.89 16 4 H 0.09 1.69 8.04 -2.38 -0.02 1.67 16 5 C -0.14 -1.80 8.44 71.98 0.61 -1.19 16 6 C 0.09 2.11 2.33 29.85 0.07 2.18 16 7 H 0.12 1.98 7.59 -2.39 -0.02 1.96 16 8 O -0.38 -10.35 8.76 -130.01 -1.14 -11.49 16 9 C 0.02 0.35 10.73 113.37 1.22 1.56 16 10 C 0.49 17.36 5.81 87.66 0.51 17.87 16 11 O -0.57 -27.12 14.18 15.93 0.23 -26.89 16 12 N -0.64 -21.63 5.22 -303.11 -1.58 -23.21 16 13 C 0.01 0.66 6.28 38.57 0.24 0.90 16 14 C -0.10 -5.48 8.57 22.14 0.19 -5.29 16 15 C -0.17 -10.03 8.60 22.48 0.19 -9.83 16 16 C 0.07 4.05 5.55 -21.28 -0.12 3.93 16 17 C -0.50 -27.59 9.05 23.39 0.21 -27.38 16 18 H 0.08 4.23 7.87 -2.91 -0.02 4.20 16 19 C 0.03 1.48 5.25 85.24 0.45 1.92 16 20 N -0.84 -46.24 10.84 21.82 0.24 -46.01 16 21 Si 0.99 39.78 29.57 68.60 2.03 41.81 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 25 C -0.22 -10.56 9.74 22.48 0.22 -10.34 16 26 C -0.10 -4.27 9.89 22.13 0.22 -4.05 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.08 1.25 6.72 -2.39 -0.02 1.23 16 30 H 0.02 0.69 7.23 -2.39 -0.02 0.67 16 31 H 0.06 1.70 7.74 -2.39 -0.02 1.68 16 32 H 0.06 0.82 7.78 -2.39 -0.02 0.80 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.82 6.86 -2.39 -0.02 0.80 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 37 H 0.07 0.81 7.71 -2.38 -0.02 0.79 16 38 H 0.42 9.91 8.79 -92.71 -0.81 9.09 16 39 H 0.09 4.74 6.41 -2.91 -0.02 4.72 16 40 H 0.10 5.89 6.22 -2.91 -0.02 5.87 16 41 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 43 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -74.34 351.05 4.80 -69.54 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.19 Total: 33.08 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.83 Total: -36.83 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.34 Total: -69.22 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.91 Total: -38.38 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -74.34 4.80 -69.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.776 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds