Wall clock time and date at job start Tue Mar 31 2020 07:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46601 * 2 1 4 4 H 1.09005 * 109.46972 * 55.00298 * 3 2 1 5 5 C 1.52998 * 109.47422 * 294.99992 * 3 2 1 6 6 C 1.52998 * 109.46741 * 174.99803 * 3 2 1 7 7 H 1.09003 * 109.47118 * 177.10402 * 6 3 2 8 8 O 1.42900 * 109.47090 * 57.10752 * 6 3 2 9 9 C 1.42900 * 114.00075 * 149.99850 * 8 6 3 10 10 C 1.50697 * 109.47499 * 297.10580 * 6 3 2 11 11 O 1.21282 * 120.00315 * 115.77848 * 10 6 3 12 12 N 1.34773 * 119.99946 * 295.78066 * 10 6 3 13 13 C 1.39246 * 120.00115 * 175.33557 * 12 10 6 14 14 C 1.39480 * 119.83064 * 215.83710 * 13 12 10 15 15 C 1.36376 * 120.16468 * 179.75691 * 14 13 12 16 16 C 1.40868 * 119.83178 * 0.51273 * 15 14 13 17 17 C 1.41152 * 120.16728 * 179.71920 * 16 15 14 18 18 H 1.07999 * 119.99806 * 205.59443 * 17 16 15 19 19 C 1.39902 * 119.99898 * 25.59466 * 17 16 15 20 20 N 1.30875 * 120.00113 * 17.98011 * 19 17 16 21 21 Si 1.86797 * 119.99790 * 197.97815 * 19 17 16 22 22 H 1.48502 * 109.47419 * 60.00416 * 21 19 17 23 23 H 1.48501 * 109.47032 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47441 * 299.99897 * 21 19 17 25 25 C 1.40871 * 119.66912 * 359.73804 * 16 15 14 26 26 C 1.36378 * 119.82843 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47529 * 299.99903 * 1 2 3 29 29 H 1.09002 * 109.47481 * 59.99835 * 1 2 3 30 30 H 1.08999 * 109.47119 * 240.00406 * 2 1 3 31 31 H 1.08993 * 109.47000 * 119.99811 * 2 1 3 32 32 H 1.09001 * 109.46891 * 300.74274 * 5 3 2 33 33 H 1.08998 * 109.46599 * 60.73582 * 5 3 2 34 34 H 1.08994 * 109.46668 * 180.73687 * 5 3 2 35 35 H 1.09009 * 109.46891 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.47132 * 299.99689 * 9 8 6 37 37 H 1.09004 * 109.47328 * 59.99970 * 9 8 6 38 38 H 0.96996 * 120.00046 * 355.33400 * 12 10 6 39 39 H 1.07993 * 119.91817 * 0.02562 * 14 13 12 40 40 H 1.08007 * 120.08482 * 180.24742 * 15 14 13 41 41 H 0.96998 * 119.99733 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08898 * 179.97438 * 25 16 15 43 43 H 1.08004 * 119.91664 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5647 1.4445 0.1258 7 1 3.9323 2.4694 0.0741 8 8 4.1315 0.6809 -0.9408 9 6 5.4284 1.1229 -1.3468 10 6 3.9607 0.8348 1.4458 11 8 4.5949 -0.1987 1.4705 12 7 3.6100 1.4379 2.5989 13 6 3.8905 0.8262 3.8179 14 6 2.9935 0.9498 4.8789 15 6 3.2590 0.3494 6.0742 16 6 4.4479 -0.3880 6.2392 17 6 4.7326 -1.0074 7.4752 18 1 5.7562 -1.2056 7.7567 19 6 3.6888 -1.3645 8.3356 20 7 2.4663 -1.4582 7.8777 21 14 4.0399 -1.7075 10.1379 22 1 4.6253 -0.4966 10.7674 23 1 2.7749 -2.0632 10.8296 24 1 4.9986 -2.8361 10.2494 25 6 5.3514 -0.5039 5.1647 26 6 5.0699 0.0981 3.9737 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0589 1.5800 -2.1497 33 1 0.5484 2.1369 -1.3906 34 1 2.0096 3.1502 -1.3128 35 1 5.7889 0.4928 -2.1600 36 1 5.3698 2.1566 -1.6872 37 1 6.1155 1.0565 -0.5032 38 1 3.1623 2.2982 2.5796 39 1 2.0844 1.5188 4.7521 40 1 2.5616 0.4427 6.8936 41 1 1.7427 -1.7061 8.4741 42 1 6.2651 -1.0673 5.2838 43 1 5.7618 0.0105 3.1491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353675420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:50 Heat of formation + Delta-G solvation = -76.006845 kcal Electronic energy + Delta-G solvation = -23478.021857 eV Core-core repulsion = 20101.569993 eV Total energy + Delta-G solvation = -3376.451865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16437 -38.12619 -36.78218 -35.70232 -34.35979 -32.94413 -30.41197 -29.55362 -29.05393 -27.77088 -26.21096 -24.72880 -23.65982 -21.66671 -20.83674 -20.33848 -19.41044 -17.49699 -17.23923 -16.66801 -16.03642 -15.60969 -15.16564 -14.81199 -14.59051 -14.16991 -13.98481 -13.77404 -13.38698 -13.07479 -12.76498 -12.59327 -12.31746 -12.09111 -12.06889 -11.84437 -11.74717 -11.45160 -11.31516 -11.10153 -11.04552 -10.84075 -10.74884 -10.58548 -10.46500 -10.34601 -9.89757 -9.57631 -9.25123 -8.95686 -8.71832 -7.53252 -6.99349 -6.74841 -4.29882 2.58404 3.00745 3.06230 3.09621 3.10894 3.28733 3.56638 3.91206 3.93711 4.61061 4.62764 4.76319 4.93202 5.05311 5.18489 5.32349 5.38407 5.48236 5.52119 5.55666 5.64489 5.68456 5.70920 5.84510 5.95950 6.02963 6.18876 6.20197 6.35935 6.45517 6.48661 6.78529 6.90993 7.04577 7.05410 7.19879 7.30096 7.60111 7.73789 7.90819 8.03790 8.28839 8.30297 8.59393 8.78768 8.88395 9.00975 10.17632 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.003609 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.472874 B = 7757.451965 C = 8413.507790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.085 0.915 5 C -0.145 4.145 6 C 0.079 3.921 7 H 0.080 0.920 8 O -0.353 6.353 9 C 0.030 3.970 10 C 0.476 3.524 11 O -0.516 6.516 12 N -0.649 5.649 13 C -0.009 4.009 14 C -0.112 4.112 15 C -0.154 4.154 16 C 0.108 3.892 17 C -0.460 4.460 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.792 5.792 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.218 4.218 26 C -0.075 4.075 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.393 0.607 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.281 0.719 42 H 0.094 0.906 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 8.525 -13.392 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.100 4.100 4 H 0.103 0.897 5 C -0.202 4.202 6 C 0.017 3.983 7 H 0.097 0.903 8 O -0.270 6.270 9 C -0.067 4.067 10 C 0.262 3.738 11 O -0.392 6.392 12 N -0.294 5.294 13 C -0.101 4.101 14 C -0.132 4.132 15 C -0.174 4.174 16 C 0.105 3.895 17 C -0.489 4.489 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.417 5.417 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.238 4.238 26 C -0.095 4.095 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.226 0.774 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.671 7.528 -13.438 15.633 hybrid contribution 0.012 0.387 0.973 1.048 sum -2.659 7.915 -12.465 15.003 Atomic orbital electron populations 1.21816 0.95917 1.01676 1.01436 1.21488 0.95448 0.95240 1.03353 1.21264 0.90944 0.98322 0.99479 0.89717 1.21832 1.01472 0.99730 0.97137 1.22134 0.95281 0.94737 0.86151 0.90271 1.87963 1.31964 1.56854 1.50173 1.22828 0.84957 0.98881 1.00022 1.21200 0.81146 0.85661 0.85804 1.90693 1.38352 1.23198 1.86936 1.43010 1.59466 1.22086 1.04844 1.17157 0.97799 1.09835 0.85341 1.20219 0.96614 1.02166 0.94174 1.20851 1.00031 1.00009 0.96508 1.17650 0.91053 0.88951 0.91863 1.19530 0.94166 1.34357 1.00882 0.90395 1.25916 0.94507 0.93013 1.00777 1.69845 1.01043 1.33839 1.36970 0.86366 0.78676 0.79828 0.81850 1.18810 1.20345 1.18994 1.20666 1.02321 1.07437 0.93366 1.20345 0.94661 0.97772 0.96744 0.92780 0.92809 0.92781 0.91045 0.91495 0.91756 0.92053 0.92981 0.89488 0.94321 0.93624 0.77420 0.89227 0.86311 0.90796 0.88772 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.12 -1.58 5.02 -26.73 -0.13 -1.71 16 3 C -0.08 -0.93 2.21 -90.62 -0.20 -1.13 16 4 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 5 C -0.14 -1.30 8.80 37.16 0.33 -0.98 16 6 C 0.08 1.04 2.22 -27.88 -0.06 0.98 16 7 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 8 O -0.35 -5.00 8.65 -55.11 -0.48 -5.48 16 9 C 0.03 0.34 10.81 101.05 1.09 1.43 16 10 C 0.48 8.49 5.77 -10.99 -0.06 8.43 16 11 O -0.52 -11.58 13.97 -14.32 -0.20 -11.78 16 12 N -0.65 -11.45 5.20 -9.74 -0.05 -11.50 16 13 C -0.01 -0.21 6.29 -83.57 -0.53 -0.73 16 14 C -0.11 -2.55 9.90 -39.79 -0.39 -2.95 16 15 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 16 C 0.11 2.90 5.56 -106.80 -0.59 2.31 16 17 C -0.46 -12.30 9.03 -37.85 -0.34 -12.64 16 18 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 19 C 0.08 1.91 5.12 -17.34 -0.09 1.82 16 20 N -0.79 -20.49 11.03 55.55 0.61 -19.88 16 21 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.22 -5.62 9.74 -39.26 -0.38 -6.00 16 26 C -0.08 -1.84 8.61 -39.79 -0.34 -2.18 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.51 6.58 -51.93 -0.34 0.17 16 30 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 31 H 0.07 1.13 7.15 -51.93 -0.37 0.76 16 32 H 0.06 0.62 7.78 -51.93 -0.40 0.22 16 33 H 0.06 0.50 6.60 -51.93 -0.34 0.15 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.39 5.39 8.65 -40.82 -0.35 5.03 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.12 6.24 -52.48 -0.33 2.79 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.10 2.52 6.28 -52.48 -0.33 2.19 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -30.89 351.00 -8.16 -39.05 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.62 Total: 9.68 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.69 Total: -18.98 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.56 Total: -31.38 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.68 Total: -17.26 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.89 -8.16 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.956 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds