Wall clock time and date at job start Tue Mar 31 2020 07:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46601 * 2 1 4 4 H 1.09005 * 109.46972 * 55.00298 * 3 2 1 5 5 C 1.52998 * 109.47422 * 294.99992 * 3 2 1 6 6 C 1.52998 * 109.46741 * 174.99803 * 3 2 1 7 7 H 1.09003 * 109.47118 * 177.10402 * 6 3 2 8 8 O 1.42900 * 109.47090 * 57.10752 * 6 3 2 9 9 C 1.42900 * 114.00075 * 149.99850 * 8 6 3 10 10 C 1.50697 * 109.47499 * 297.10580 * 6 3 2 11 11 O 1.21282 * 120.00315 * 115.77848 * 10 6 3 12 12 N 1.34773 * 119.99946 * 295.78066 * 10 6 3 13 13 C 1.39246 * 120.00115 * 175.33557 * 12 10 6 14 14 C 1.39480 * 119.83064 * 215.83710 * 13 12 10 15 15 C 1.36376 * 120.16468 * 179.75691 * 14 13 12 16 16 C 1.40868 * 119.83178 * 0.51273 * 15 14 13 17 17 C 1.41152 * 120.16728 * 179.71920 * 16 15 14 18 18 H 1.07999 * 119.99806 * 205.59443 * 17 16 15 19 19 C 1.39902 * 119.99898 * 25.59466 * 17 16 15 20 20 N 1.30875 * 120.00113 * 17.98011 * 19 17 16 21 21 Si 1.86797 * 119.99790 * 197.97815 * 19 17 16 22 22 H 1.48502 * 109.47419 * 60.00416 * 21 19 17 23 23 H 1.48501 * 109.47032 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47441 * 299.99897 * 21 19 17 25 25 C 1.40871 * 119.66912 * 359.73804 * 16 15 14 26 26 C 1.36378 * 119.82843 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47529 * 299.99903 * 1 2 3 29 29 H 1.09002 * 109.47481 * 59.99835 * 1 2 3 30 30 H 1.08999 * 109.47119 * 240.00406 * 2 1 3 31 31 H 1.08993 * 109.47000 * 119.99811 * 2 1 3 32 32 H 1.09001 * 109.46891 * 300.74274 * 5 3 2 33 33 H 1.08998 * 109.46599 * 60.73582 * 5 3 2 34 34 H 1.08994 * 109.46668 * 180.73687 * 5 3 2 35 35 H 1.09009 * 109.46891 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.47132 * 299.99689 * 9 8 6 37 37 H 1.09004 * 109.47328 * 59.99970 * 9 8 6 38 38 H 0.96996 * 120.00046 * 355.33400 * 12 10 6 39 39 H 1.07993 * 119.91817 * 0.02562 * 14 13 12 40 40 H 1.08007 * 120.08482 * 180.24742 * 15 14 13 41 41 H 0.96998 * 119.99733 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08898 * 179.97438 * 25 16 15 43 43 H 1.08004 * 119.91664 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5647 1.4445 0.1258 7 1 3.9323 2.4694 0.0741 8 8 4.1315 0.6809 -0.9408 9 6 5.4284 1.1229 -1.3468 10 6 3.9607 0.8348 1.4458 11 8 4.5949 -0.1987 1.4705 12 7 3.6100 1.4379 2.5989 13 6 3.8905 0.8262 3.8179 14 6 2.9935 0.9498 4.8789 15 6 3.2590 0.3494 6.0742 16 6 4.4479 -0.3880 6.2392 17 6 4.7326 -1.0074 7.4752 18 1 5.7562 -1.2056 7.7567 19 6 3.6888 -1.3645 8.3356 20 7 2.4663 -1.4582 7.8777 21 14 4.0399 -1.7075 10.1379 22 1 4.6253 -0.4966 10.7674 23 1 2.7749 -2.0632 10.8296 24 1 4.9986 -2.8361 10.2494 25 6 5.3514 -0.5039 5.1647 26 6 5.0699 0.0981 3.9737 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0589 1.5800 -2.1497 33 1 0.5484 2.1369 -1.3906 34 1 2.0096 3.1502 -1.3128 35 1 5.7889 0.4928 -2.1600 36 1 5.3698 2.1566 -1.6872 37 1 6.1155 1.0565 -0.5032 38 1 3.1623 2.2982 2.5796 39 1 2.0844 1.5188 4.7521 40 1 2.5616 0.4427 6.8936 41 1 1.7427 -1.7061 8.4741 42 1 6.2651 -1.0673 5.2838 43 1 5.7618 0.0105 3.1491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353675420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:50 Heat of formation + Delta-G solvation = -93.854666 kcal Electronic energy + Delta-G solvation = -23478.795797 eV Core-core repulsion = 20101.569993 eV Total energy + Delta-G solvation = -3377.225804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56365 -39.64041 -38.34551 -36.70487 -36.08857 -34.72579 -31.64431 -31.39640 -30.67055 -28.82768 -27.37837 -26.29625 -24.73004 -23.42822 -22.62418 -21.67501 -20.68388 -19.31795 -18.76939 -18.02331 -17.32584 -17.05127 -16.69023 -15.98387 -15.90794 -15.69620 -15.42698 -14.94630 -14.75735 -14.51437 -14.19805 -14.00498 -13.81030 -13.63024 -13.29001 -13.21438 -12.87169 -12.82935 -12.76153 -12.61304 -12.46673 -12.35966 -11.86914 -11.73209 -11.60505 -11.45742 -11.41370 -11.35663 -11.10149 -10.71112 -10.18512 -9.48308 -8.88769 -8.62543 -6.29507 0.79947 1.12089 1.38451 1.45176 1.51244 1.74209 2.20203 2.24602 2.72969 2.83447 3.65231 3.68582 3.76033 3.88521 4.06506 4.25545 4.38097 4.47209 4.49139 4.51039 4.60614 4.66114 4.68180 4.80883 4.83611 4.90451 5.08803 5.10464 5.14080 5.15367 5.19758 5.23392 5.30073 5.42539 5.49030 5.53822 5.64241 5.86820 5.98544 6.04911 6.12384 6.36074 6.62973 6.74195 6.91075 6.97525 7.40673 8.31682 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.003609 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.472874 B = 7757.451965 C = 8413.507790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.079 4.079 4 H 0.100 0.900 5 C -0.137 4.137 6 C 0.087 3.913 7 H 0.118 0.882 8 O -0.372 6.372 9 C 0.024 3.976 10 C 0.474 3.526 11 O -0.568 6.568 12 N -0.640 5.640 13 C 0.006 3.994 14 C -0.108 4.108 15 C -0.171 4.171 16 C 0.077 3.923 17 C -0.500 4.500 18 H 0.074 0.926 19 C 0.037 3.963 20 N -0.823 5.823 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.238 4.238 26 C -0.088 4.088 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.416 0.584 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.290 0.710 42 H 0.091 0.909 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 10.697 -14.491 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.098 4.098 4 H 0.118 0.882 5 C -0.194 4.194 6 C 0.025 3.975 7 H 0.136 0.864 8 O -0.289 6.289 9 C -0.072 4.072 10 C 0.262 3.738 11 O -0.447 6.447 12 N -0.287 5.287 13 C -0.087 4.087 14 C -0.128 4.128 15 C -0.191 4.191 16 C 0.075 3.925 17 C -0.529 4.529 18 H 0.092 0.908 19 C -0.178 4.178 20 N -0.449 5.449 21 Si 0.804 3.196 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.258 4.258 26 C -0.108 4.108 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.254 0.746 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.119 9.743 -14.575 18.009 hybrid contribution 0.471 -0.282 1.132 1.259 sum -3.648 9.461 -13.442 16.838 Atomic orbital electron populations 1.21791 0.94084 1.01787 1.02727 1.21439 0.97070 0.96373 1.00566 1.21349 0.89366 0.97199 1.01844 0.88189 1.21790 1.02378 1.00397 0.94879 1.22275 0.96577 0.95737 0.82917 0.86407 1.87959 1.33061 1.57988 1.49911 1.23008 0.83422 1.01187 0.99571 1.22261 0.79389 0.84875 0.87243 1.90673 1.40579 1.25648 1.87758 1.42926 1.59464 1.22955 1.03320 1.17224 0.96414 1.08088 0.86988 1.20495 0.97668 1.01540 0.93117 1.20879 0.99750 1.00954 0.97547 1.17967 0.92054 0.90009 0.92492 1.19770 0.94703 1.36312 1.02098 0.90803 1.26755 0.93882 0.92101 1.05077 1.69882 1.01975 1.34220 1.38775 0.85228 0.78906 0.79701 0.75716 1.18216 1.18910 1.18735 1.20785 1.02556 1.08410 0.94061 1.20446 0.95773 0.98532 0.96068 0.93411 0.92538 0.90335 0.92148 0.95984 0.92476 0.90708 0.90766 0.88310 0.90993 0.95737 0.74643 0.85625 0.87239 0.89931 0.89108 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.67 71.98 0.70 -2.30 16 2 C -0.12 -3.01 5.02 30.60 0.15 -2.86 16 3 C -0.08 -1.57 2.21 -10.79 -0.02 -1.59 16 4 H 0.10 1.70 7.91 -2.38 -0.02 1.68 16 5 C -0.14 -1.89 8.80 71.98 0.63 -1.26 16 6 C 0.09 2.07 2.22 29.85 0.07 2.14 16 7 H 0.12 1.96 7.79 -2.39 -0.02 1.94 16 8 O -0.37 -9.94 8.65 -129.98 -1.12 -11.06 16 9 C 0.02 0.50 10.81 113.37 1.23 1.73 16 10 C 0.47 16.52 5.77 87.66 0.51 17.02 16 11 O -0.57 -26.03 13.97 15.97 0.22 -25.81 16 12 N -0.64 -21.57 5.20 -303.12 -1.57 -23.14 16 13 C 0.01 0.28 6.29 38.56 0.24 0.52 16 14 C -0.11 -4.89 9.90 22.13 0.22 -4.67 16 15 C -0.17 -9.02 8.63 22.48 0.19 -8.82 16 16 C 0.08 4.35 5.56 -21.28 -0.12 4.23 16 17 C -0.50 -27.80 9.03 23.39 0.21 -27.59 16 18 H 0.07 3.99 7.91 -2.91 -0.02 3.96 16 19 C 0.04 1.89 5.12 85.24 0.44 2.33 16 20 N -0.82 -43.34 11.03 21.82 0.24 -43.10 16 21 Si 0.98 38.50 29.60 68.60 2.03 40.53 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 C -0.24 -12.90 9.74 22.48 0.22 -12.68 16 26 C -0.09 -4.44 8.61 22.13 0.19 -4.25 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.22 6.58 -2.39 -0.02 1.20 16 30 H 0.06 1.66 7.77 -2.39 -0.02 1.64 16 31 H 0.02 0.74 7.15 -2.39 -0.02 0.73 16 32 H 0.06 0.90 7.78 -2.39 -0.02 0.88 16 33 H 0.07 0.86 6.60 -2.39 -0.02 0.84 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.42 10.10 8.65 -92.71 -0.80 9.30 16 39 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 5.89 6.24 -2.91 -0.02 5.88 16 41 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 42 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.10 5.08 6.28 -2.91 -0.02 5.06 16 Total: -1.00 -71.30 351.00 4.85 -66.45 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.20 Total: 34.19 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 4.85 Total: -38.05 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.33 Total: -66.25 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.90 Total: -36.87 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -71.30 4.85 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.408 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds