Wall clock time and date at job start Tue Mar 31 2020 07:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 H 1.08998 * 109.46978 * 54.67857 * 3 2 1 5 5 C 1.52999 * 109.46977 * 294.68015 * 3 2 1 6 6 C 1.52997 * 109.47053 * 174.67829 * 3 2 1 7 7 H 1.08998 * 109.47099 * 299.47843 * 6 3 2 8 8 O 1.42903 * 109.47024 * 59.48186 * 6 3 2 9 9 C 1.42896 * 113.99867 * 213.78829 * 8 6 3 10 10 C 1.50698 * 109.46847 * 179.47578 * 6 3 2 11 11 O 1.21281 * 120.00147 * 245.00228 * 10 6 3 12 12 N 1.34770 * 120.00136 * 65.00583 * 10 6 3 13 13 C 1.39237 * 120.00347 * 184.17763 * 12 10 6 14 14 C 1.39479 * 119.83040 * 323.90502 * 13 12 10 15 15 C 1.36379 * 120.16286 * 179.72297 * 14 13 12 16 16 C 1.40861 * 119.83288 * 0.27932 * 15 14 13 17 17 C 1.41154 * 120.16538 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99909 * 343.08275 * 17 16 15 19 19 C 1.39908 * 120.00095 * 163.09285 * 17 16 15 20 20 N 1.30874 * 119.99968 * 330.82973 * 19 17 16 21 21 Si 1.86796 * 120.00080 * 150.83940 * 19 17 16 22 22 H 1.48498 * 109.47485 * 94.98887 * 21 19 17 23 23 H 1.48509 * 109.46816 * 214.99190 * 21 19 17 24 24 H 1.48502 * 109.47016 * 334.98952 * 21 19 17 25 25 C 1.40874 * 119.67417 * 359.97438 * 16 15 14 26 26 C 1.36380 * 119.82516 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46601 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46715 * 299.99758 * 1 2 3 29 29 H 1.09003 * 109.46858 * 60.00192 * 1 2 3 30 30 H 1.08999 * 109.46715 * 240.00242 * 2 1 3 31 31 H 1.08994 * 109.46712 * 120.00378 * 2 1 3 32 32 H 1.09003 * 109.47143 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47605 * 299.99999 * 5 3 2 34 34 H 1.09004 * 109.47541 * 60.00127 * 5 3 2 35 35 H 1.08995 * 109.47422 * 304.95340 * 9 8 6 36 36 H 1.09005 * 109.47508 * 64.95428 * 9 8 6 37 37 H 1.08997 * 109.47277 * 184.94783 * 9 8 6 38 38 H 0.97008 * 119.99947 * 4.17381 * 12 10 6 39 39 H 1.07995 * 119.91880 * 0.02562 * 14 13 12 40 40 H 1.08004 * 120.08125 * 180.30011 * 15 14 13 41 41 H 0.96996 * 120.00268 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.08765 * 180.02562 * 25 16 15 43 43 H 1.07994 * 119.91363 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6422 2.1241 -1.3107 6 6 3.5642 1.4446 0.1338 7 1 3.8472 0.9673 1.0719 8 8 4.1393 0.7255 -0.9591 9 6 5.3320 0.0139 -0.6232 10 6 4.0676 2.8649 0.1208 11 8 4.7700 3.2511 -0.7894 12 7 3.7374 3.7060 1.1207 13 6 4.1294 5.0410 1.0657 14 6 5.3660 5.3789 0.5162 15 6 5.7543 6.6847 0.4537 16 6 4.9055 7.6928 0.9511 17 6 5.3001 9.0466 0.8895 18 1 6.3366 9.2999 0.7226 19 6 4.3485 10.0604 1.0448 20 7 3.1072 9.8534 0.6854 21 14 4.8497 11.7095 1.7649 22 1 5.1601 12.6566 0.6641 23 1 3.7358 12.2509 2.5844 24 1 6.0516 11.5321 2.6188 25 6 3.6602 7.3432 1.5095 26 6 3.2852 6.0331 1.5642 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0052 3.1519 -1.3106 33 1 2.0812 1.5835 -2.1493 34 1 0.5564 2.1226 -1.4061 35 1 6.0550 0.7024 -0.1858 36 1 5.0967 -0.7709 0.0958 37 1 5.7543 -0.4329 -1.5233 38 1 3.2266 3.3814 1.8789 39 1 6.0156 4.6050 0.1349 40 1 6.7101 6.9453 0.0235 41 1 2.4475 10.5563 0.7927 42 1 3.0040 8.1107 1.8925 43 1 2.3307 5.7636 1.9915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353675425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:56 Heat of formation + Delta-G solvation = -75.659916 kcal Electronic energy + Delta-G solvation = -23359.691821 eV Core-core repulsion = 19983.255000 eV Total energy + Delta-G solvation = -3376.436821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12809 -38.12172 -36.78747 -35.72088 -34.37624 -33.00426 -30.60529 -29.52956 -28.94248 -27.48794 -26.23063 -24.99830 -23.83339 -21.59773 -20.74220 -20.28178 -19.43907 -17.46575 -17.21744 -16.68720 -16.13428 -15.65678 -15.18543 -14.84874 -14.57060 -14.19614 -13.95602 -13.66332 -13.48426 -13.10147 -12.91356 -12.69277 -12.18510 -12.09165 -11.97183 -11.91701 -11.80018 -11.32003 -11.25602 -11.10838 -11.05409 -10.88149 -10.77219 -10.68475 -10.57679 -10.31793 -9.95552 -9.65989 -9.16534 -8.90506 -8.69657 -7.51990 -7.11346 -6.84728 -4.27032 2.59550 2.96626 3.04128 3.10628 3.12871 3.30256 3.56576 3.88101 3.95429 4.51927 4.66414 4.70754 4.86025 5.00567 5.18054 5.27785 5.35383 5.42942 5.48536 5.58532 5.62894 5.66994 5.72223 5.86573 5.94298 6.03181 6.08673 6.21564 6.29508 6.47049 6.49432 6.81084 6.92859 7.00638 7.06516 7.19582 7.32123 7.59245 7.74693 7.93530 8.03971 8.27270 8.33716 8.57355 8.81069 8.85861 9.02791 10.03466 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.003427 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.050936 B = 8167.441861 C = 8830.126973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.082 4.082 4 H 0.084 0.916 5 C -0.147 4.147 6 C 0.079 3.921 7 H 0.079 0.921 8 O -0.353 6.353 9 C 0.030 3.970 10 C 0.477 3.523 11 O -0.517 6.517 12 N -0.648 5.648 13 C -0.021 4.021 14 C -0.068 4.068 15 C -0.226 4.226 16 C 0.107 3.893 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.082 3.918 20 N -0.772 5.772 21 Si 0.901 3.099 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.171 4.171 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.283 0.717 42 H 0.118 0.882 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -15.613 2.644 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.101 4.101 4 H 0.102 0.898 5 C -0.204 4.204 6 C 0.017 3.983 7 H 0.097 0.903 8 O -0.269 6.269 9 C -0.066 4.066 10 C 0.263 3.737 11 O -0.392 6.392 12 N -0.293 5.293 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.246 4.246 16 C 0.105 3.895 17 C -0.486 4.486 18 H 0.099 0.901 19 C -0.139 4.139 20 N -0.395 5.395 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.191 4.191 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.043 -15.258 1.724 15.879 hybrid contribution 0.005 0.658 0.917 1.128 sum -4.037 -14.601 2.641 15.377 Atomic orbital electron populations 1.21829 0.95726 1.01428 1.02115 1.21507 0.95813 0.95523 1.02378 1.21273 0.91018 0.97535 1.00232 0.89775 1.21807 1.00827 1.01029 0.96711 1.22122 0.94637 0.90319 0.91229 0.90306 1.87970 1.40596 1.64646 1.33732 1.22824 0.87315 0.95042 1.01462 1.21125 0.82111 0.88043 0.82464 1.90690 1.36466 1.76809 1.35241 1.42983 1.55422 1.09185 1.21687 1.17092 0.96559 0.81327 1.16346 1.20317 0.93854 0.96163 0.98496 1.20556 1.01614 0.92504 1.09971 1.17617 0.91190 0.92801 0.87938 1.19570 0.95594 0.90466 1.42950 0.90142 1.25984 0.94313 1.01144 0.92433 1.69934 1.03745 1.35007 1.30819 0.86418 0.79923 0.81076 0.80105 1.19463 1.19890 1.18164 1.20814 0.99105 0.93889 1.05268 1.20188 0.96654 0.93130 1.02531 0.92899 0.92775 0.92276 0.91017 0.92323 0.92225 0.91670 0.92469 0.93759 0.94290 0.89499 0.77515 0.87931 0.88885 0.90635 0.86472 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.16 0.36 -0.91 16 2 C -0.11 -1.07 5.17 -26.73 -0.14 -1.21 16 3 C -0.08 -0.94 2.24 -90.62 -0.20 -1.15 16 4 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 5 C -0.15 -1.98 8.56 37.16 0.32 -1.66 16 6 C 0.08 1.05 2.28 -27.89 -0.06 0.99 16 7 H 0.08 0.84 7.78 -51.93 -0.40 0.44 16 8 O -0.35 -5.03 8.63 -55.09 -0.48 -5.51 16 9 C 0.03 0.34 10.80 101.05 1.09 1.43 16 10 C 0.48 8.60 5.71 -10.99 -0.06 8.54 16 11 O -0.52 -11.72 13.98 -14.31 -0.20 -11.92 16 12 N -0.65 -11.57 5.26 -9.74 -0.05 -11.62 16 13 C -0.02 -0.48 6.29 -83.57 -0.53 -1.00 16 14 C -0.07 -1.69 8.61 -39.79 -0.34 -2.03 16 15 C -0.23 -5.87 9.74 -39.26 -0.38 -6.25 16 16 C 0.11 2.90 5.63 -106.80 -0.60 2.30 16 17 C -0.46 -12.18 8.99 -37.85 -0.34 -12.52 16 18 H 0.08 2.07 7.99 -52.48 -0.42 1.65 16 19 C 0.08 2.04 4.94 -17.33 -0.09 1.95 16 20 N -0.77 -19.63 11.19 55.55 0.62 -19.01 16 21 Si 0.90 18.23 29.65 -169.99 -5.04 13.19 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.17 -4.41 8.74 -39.25 -0.34 -4.75 16 26 C -0.10 -2.42 9.90 -39.79 -0.39 -2.81 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 6.58 -51.93 -0.34 0.17 16 30 H 0.07 0.72 7.83 -51.93 -0.41 0.32 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 1.00 7.20 -51.93 -0.37 0.62 16 33 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 34 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 5.46 8.76 -40.82 -0.36 5.10 16 39 H 0.10 2.51 6.29 -52.49 -0.33 2.18 16 40 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 42 H 0.12 3.07 6.04 -52.49 -0.32 2.75 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -30.87 351.36 -8.19 -39.06 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.63 Total: 9.60 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.71 Total: -19.09 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.57 Total: -30.62 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.68 Total: -17.43 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.04 Total: 13.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.87 -8.19 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.603 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds