Wall clock time and date at job start Tue Mar 31 2020 07:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 H 1.08998 * 109.46978 * 54.67857 * 3 2 1 5 5 C 1.52999 * 109.46977 * 294.68015 * 3 2 1 6 6 C 1.52997 * 109.47053 * 174.67829 * 3 2 1 7 7 H 1.08998 * 109.47099 * 299.47843 * 6 3 2 8 8 O 1.42903 * 109.47024 * 59.48186 * 6 3 2 9 9 C 1.42896 * 113.99867 * 213.78829 * 8 6 3 10 10 C 1.50698 * 109.46847 * 179.47578 * 6 3 2 11 11 O 1.21281 * 120.00147 * 245.00228 * 10 6 3 12 12 N 1.34770 * 120.00136 * 65.00583 * 10 6 3 13 13 C 1.39237 * 120.00347 * 184.17763 * 12 10 6 14 14 C 1.39479 * 119.83040 * 323.90502 * 13 12 10 15 15 C 1.36379 * 120.16286 * 179.72297 * 14 13 12 16 16 C 1.40861 * 119.83288 * 0.27932 * 15 14 13 17 17 C 1.41154 * 120.16538 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99909 * 343.08275 * 17 16 15 19 19 C 1.39908 * 120.00095 * 163.09285 * 17 16 15 20 20 N 1.30874 * 119.99968 * 330.82973 * 19 17 16 21 21 Si 1.86796 * 120.00080 * 150.83940 * 19 17 16 22 22 H 1.48498 * 109.47485 * 94.98887 * 21 19 17 23 23 H 1.48509 * 109.46816 * 214.99190 * 21 19 17 24 24 H 1.48502 * 109.47016 * 334.98952 * 21 19 17 25 25 C 1.40874 * 119.67417 * 359.97438 * 16 15 14 26 26 C 1.36380 * 119.82516 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46601 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46715 * 299.99758 * 1 2 3 29 29 H 1.09003 * 109.46858 * 60.00192 * 1 2 3 30 30 H 1.08999 * 109.46715 * 240.00242 * 2 1 3 31 31 H 1.08994 * 109.46712 * 120.00378 * 2 1 3 32 32 H 1.09003 * 109.47143 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47605 * 299.99999 * 5 3 2 34 34 H 1.09004 * 109.47541 * 60.00127 * 5 3 2 35 35 H 1.08995 * 109.47422 * 304.95340 * 9 8 6 36 36 H 1.09005 * 109.47508 * 64.95428 * 9 8 6 37 37 H 1.08997 * 109.47277 * 184.94783 * 9 8 6 38 38 H 0.97008 * 119.99947 * 4.17381 * 12 10 6 39 39 H 1.07995 * 119.91880 * 0.02562 * 14 13 12 40 40 H 1.08004 * 120.08125 * 180.30011 * 15 14 13 41 41 H 0.96996 * 120.00268 * 180.02562 * 20 19 17 42 42 H 1.07996 * 120.08765 * 180.02562 * 25 16 15 43 43 H 1.07994 * 119.91363 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6422 2.1241 -1.3107 6 6 3.5642 1.4446 0.1338 7 1 3.8472 0.9673 1.0719 8 8 4.1393 0.7255 -0.9591 9 6 5.3320 0.0139 -0.6232 10 6 4.0676 2.8649 0.1208 11 8 4.7700 3.2511 -0.7894 12 7 3.7374 3.7060 1.1207 13 6 4.1294 5.0410 1.0657 14 6 5.3660 5.3789 0.5162 15 6 5.7543 6.6847 0.4537 16 6 4.9055 7.6928 0.9511 17 6 5.3001 9.0466 0.8895 18 1 6.3366 9.2999 0.7226 19 6 4.3485 10.0604 1.0448 20 7 3.1072 9.8534 0.6854 21 14 4.8497 11.7095 1.7649 22 1 5.1601 12.6566 0.6641 23 1 3.7358 12.2509 2.5844 24 1 6.0516 11.5321 2.6188 25 6 3.6602 7.3432 1.5095 26 6 3.2852 6.0331 1.5642 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0052 3.1519 -1.3106 33 1 2.0812 1.5835 -2.1493 34 1 0.5564 2.1226 -1.4061 35 1 6.0550 0.7024 -0.1858 36 1 5.0967 -0.7709 0.0958 37 1 5.7543 -0.4329 -1.5233 38 1 3.2266 3.3814 1.8789 39 1 6.0156 4.6050 0.1349 40 1 6.7101 6.9453 0.0235 41 1 2.4475 10.5563 0.7927 42 1 3.0040 8.1107 1.8925 43 1 2.3307 5.7636 1.9915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353675425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:55 Heat of formation + Delta-G solvation = -93.439705 kcal Electronic energy + Delta-G solvation = -23360.462810 eV Core-core repulsion = 19983.255000 eV Total energy + Delta-G solvation = -3377.207810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53296 -39.62536 -38.36032 -36.67017 -36.10862 -34.76553 -31.72248 -31.40480 -30.60722 -28.61623 -27.37365 -26.48762 -24.96325 -23.37338 -22.53233 -21.44675 -20.74789 -19.34637 -18.68603 -17.99806 -17.42588 -17.08170 -16.73317 -15.97520 -15.81743 -15.68743 -15.42539 -14.90236 -14.69954 -14.44666 -14.36787 -14.00887 -13.96282 -13.77967 -13.17495 -13.01183 -12.93512 -12.83692 -12.75228 -12.68934 -12.45527 -12.18084 -11.91898 -11.76499 -11.65374 -11.51143 -11.43365 -11.29582 -10.99344 -10.69537 -10.16477 -9.47385 -9.00149 -8.70562 -6.25222 0.81699 1.13765 1.37278 1.42841 1.54806 1.76078 2.18461 2.24350 2.65675 2.85652 3.63714 3.72561 3.74888 3.89879 4.07953 4.26190 4.39264 4.46348 4.50263 4.53711 4.62043 4.64743 4.72708 4.79203 4.83456 4.91199 5.00559 5.09365 5.16451 5.16785 5.23240 5.25328 5.29999 5.45005 5.49407 5.56180 5.63134 5.87608 5.99956 6.05708 6.13785 6.34878 6.61818 6.76711 6.88818 6.98573 7.43413 8.20521 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.003427 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.050936 B = 8167.441861 C = 8830.126973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.079 4.079 4 H 0.102 0.898 5 C -0.143 4.143 6 C 0.087 3.913 7 H 0.118 0.882 8 O -0.373 6.373 9 C 0.024 3.976 10 C 0.475 3.525 11 O -0.569 6.569 12 N -0.639 5.639 13 C -0.008 4.008 14 C -0.081 4.081 15 C -0.249 4.249 16 C 0.078 3.922 17 C -0.498 4.498 18 H 0.074 0.926 19 C 0.045 3.955 20 N -0.802 5.802 21 Si 0.980 3.020 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.259 1.259 25 C -0.190 4.190 26 C -0.102 4.102 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.415 0.585 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.294 0.706 42 H 0.110 0.890 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -17.182 4.322 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.097 4.097 4 H 0.120 0.880 5 C -0.201 4.201 6 C 0.026 3.974 7 H 0.136 0.864 8 O -0.290 6.290 9 C -0.072 4.072 10 C 0.263 3.737 11 O -0.448 6.448 12 N -0.285 5.285 13 C -0.101 4.101 14 C -0.101 4.101 15 C -0.269 4.269 16 C 0.076 3.924 17 C -0.525 4.525 18 H 0.093 0.907 19 C -0.174 4.174 20 N -0.425 5.425 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.183 1.183 25 C -0.209 4.209 26 C -0.122 4.122 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.253 0.747 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.644 -16.875 3.421 18.120 hybrid contribution 0.482 0.995 0.314 1.149 sum -5.162 -15.880 3.735 17.111 Atomic orbital electron populations 1.21829 0.94869 1.02277 1.02100 1.21452 0.96445 0.93533 1.03015 1.21359 0.89638 0.99331 0.99419 0.88041 1.21768 1.01871 0.98576 0.97839 1.22235 0.95521 0.86884 0.92810 0.86443 1.87963 1.41540 1.64723 1.34812 1.23019 0.86095 0.95228 1.02857 1.22183 0.80562 0.89809 0.81156 1.90670 1.38772 1.78141 1.37170 1.42896 1.55427 1.07327 1.22881 1.17160 0.95373 0.83653 1.13945 1.20412 0.95010 0.95525 0.99111 1.20671 1.01875 0.93305 1.11060 1.17935 0.92164 0.93440 0.88898 1.19792 0.95955 0.91344 1.45441 0.90746 1.26820 0.93961 1.04710 0.91876 1.69938 1.04804 1.36818 1.30987 0.85249 0.79667 0.75889 0.79272 1.18663 1.18324 1.18312 1.20859 0.98854 0.95048 1.06179 1.20469 0.97856 0.92125 1.01716 0.91685 0.92027 0.93071 0.91887 0.90190 0.96140 0.92954 0.90584 0.95430 0.90921 0.88567 0.74746 0.88321 0.89298 0.89492 0.87221 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.99 0.70 -1.31 16 2 C -0.11 -1.60 5.17 30.60 0.16 -1.44 16 3 C -0.08 -1.59 2.24 -10.79 -0.02 -1.62 16 4 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 5 C -0.14 -3.74 8.56 71.98 0.62 -3.13 16 6 C 0.09 2.11 2.28 29.85 0.07 2.18 16 7 H 0.12 1.99 7.78 -2.39 -0.02 1.97 16 8 O -0.37 -10.04 8.63 -129.99 -1.12 -11.16 16 9 C 0.02 0.49 10.80 113.37 1.22 1.72 16 10 C 0.47 16.71 5.71 87.66 0.50 17.22 16 11 O -0.57 -26.33 13.98 15.96 0.22 -26.11 16 12 N -0.64 -21.79 5.26 -303.12 -1.60 -23.39 16 13 C -0.01 -0.36 6.29 38.57 0.24 -0.12 16 14 C -0.08 -4.09 8.61 22.14 0.19 -3.90 16 15 C -0.25 -13.57 9.74 22.48 0.22 -13.35 16 16 C 0.08 4.41 5.63 -21.28 -0.12 4.29 16 17 C -0.50 -27.55 8.99 23.39 0.21 -27.34 16 18 H 0.07 4.03 7.99 -2.91 -0.02 4.01 16 19 C 0.04 2.25 4.94 85.24 0.42 2.68 16 20 N -0.80 -41.29 11.19 21.82 0.24 -41.05 16 21 Si 0.98 37.54 29.65 68.60 2.03 39.57 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.19 -9.97 8.74 22.48 0.20 -9.78 16 26 C -0.10 -4.63 9.90 22.14 0.22 -4.41 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.74 6.58 -2.39 -0.02 0.73 16 30 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.02 0.67 7.20 -2.39 -0.02 0.65 16 33 H 0.05 1.47 7.70 -2.39 -0.02 1.46 16 34 H 0.08 1.65 6.58 -2.38 -0.02 1.63 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.42 10.25 8.76 -92.70 -0.81 9.44 16 39 H 0.10 5.03 6.29 -2.91 -0.02 5.02 16 40 H 0.09 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 42 H 0.11 5.86 6.04 -2.91 -0.02 5.84 16 43 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -70.84 351.36 4.80 -66.05 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.19 Total: 34.39 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 4.82 Total: -38.32 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -1.35 Total: -64.43 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.90 Total: -37.27 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -70.84 4.80 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353675425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.392 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds