Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 O 1.42897 * 109.46956 * 239.99968 * 2 1 3 5 5 C 1.53005 * 109.47097 * 120.00272 * 2 1 3 6 6 N 1.46502 * 109.46864 * 184.99483 * 5 2 1 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.09001 * 109.47028 * 299.99821 * 1 2 3 27 27 H 1.09001 * 109.47407 * 59.99863 * 1 2 3 28 28 H 1.09004 * 109.47634 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46652 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47285 * 300.00199 * 3 2 1 31 31 H 1.09003 * 109.47006 * 60.00694 * 3 2 1 32 32 H 0.96705 * 114.00571 * 300.00543 * 4 2 1 33 33 H 1.08998 * 109.47146 * 64.99935 * 5 2 1 34 34 H 1.08995 * 109.46642 * 304.99562 * 5 2 1 35 35 H 0.97002 * 120.00062 * 0.02562 * 6 5 2 36 36 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 37 37 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 38 38 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 39 39 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 40 40 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 41 41 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 42 42 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6180 1.3108 7 6 4.1730 -1.1828 2.3329 8 8 3.5698 -1.7770 3.2014 9 6 5.6748 -1.0761 2.3966 10 6 6.1849 -1.7975 3.6458 11 1 5.6704 -1.4096 4.5249 12 6 5.9161 -3.2749 3.5177 13 1 5.8497 -3.7288 2.5399 14 6 5.7551 -4.0469 4.6485 15 7 5.9659 -3.5245 5.8368 16 14 5.2447 -5.8371 4.4924 17 1 5.1479 -6.4438 5.8443 18 1 3.9244 -5.9183 3.8177 19 1 6.2561 -6.5720 3.6912 20 6 7.6673 -1.5672 3.7889 21 6 8.5403 -2.0787 2.8470 22 6 9.8998 -1.8636 2.9759 23 6 10.3869 -1.1449 4.0515 24 6 9.5143 -0.6378 4.9961 25 6 8.1545 -0.8492 4.8649 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.7209 -1.5952 -1.2330 33 1 1.7516 -1.7716 1.2056 34 1 1.6054 -0.2618 2.1369 35 1 3.9824 -0.1425 0.6164 36 1 5.9629 -0.0258 2.4402 37 1 6.1098 -1.5356 1.5091 38 1 6.3087 -2.6204 5.9154 39 1 8.1601 -2.6438 2.0088 40 1 10.5814 -2.2596 2.2377 41 1 11.4492 -0.9791 4.1536 42 1 9.8948 -0.0759 5.8362 43 1 7.4728 -0.4529 5.6028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356258465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -80.435621 kcal Electronic energy + Delta-G solvation = -23414.248437 eV Core-core repulsion = 20037.604526 eV Total energy + Delta-G solvation = -3376.643911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50290 -38.57175 -37.81850 -34.42523 -33.82123 -32.10599 -31.26043 -30.09967 -29.05273 -27.63739 -26.45484 -24.53125 -22.79234 -21.65654 -20.60277 -20.23518 -19.43296 -17.30890 -16.74400 -16.31367 -15.78439 -15.56482 -15.11097 -14.64113 -14.34267 -14.06618 -14.02428 -13.64460 -13.17039 -12.96284 -12.76837 -12.65461 -12.40992 -12.38370 -12.27091 -11.97444 -11.91887 -11.76807 -11.42740 -10.91165 -10.86756 -10.71132 -10.42114 -10.23922 -10.08629 -10.02902 -9.66603 -9.02011 -8.63198 -8.55886 -8.26449 -8.12746 -7.62497 -6.20853 -3.89430 2.20196 2.25787 3.48077 3.51217 3.55891 3.62436 3.71856 4.09262 4.55008 4.62011 4.68370 4.69870 4.76437 5.33974 5.38789 5.45113 5.53451 5.57617 5.60674 5.64698 5.70075 5.77212 5.77394 5.85964 5.93476 6.01547 6.05071 6.11513 6.18817 6.33094 6.43807 6.70561 6.80325 6.88833 6.94297 7.22251 7.24158 7.39471 7.47094 7.74572 7.87060 8.06642 8.24987 8.53322 8.98170 9.04663 9.79283 11.18608 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.004741 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.939649 B = 5903.945403 C = 7216.635660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 C -0.139 4.139 4 O -0.559 6.559 5 C 0.098 3.902 6 N -0.743 5.743 7 C 0.512 3.488 8 O -0.502 6.502 9 C -0.116 4.116 10 C 0.073 3.927 11 H 0.049 0.951 12 C -0.566 4.566 13 H 0.044 0.956 14 C 0.031 3.969 15 N -0.907 5.907 16 Si 1.060 2.940 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.032 4.032 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.378 0.622 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 9.208 -11.369 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.075 3.925 3 C -0.196 4.196 4 O -0.365 6.365 5 C -0.027 4.027 6 N -0.400 5.400 7 C 0.298 3.702 8 O -0.373 6.373 9 C -0.156 4.156 10 C 0.054 3.946 11 H 0.067 0.933 12 C -0.604 4.604 13 H 0.063 0.937 14 C -0.174 4.174 15 N -0.542 5.542 16 Si 0.889 3.111 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.217 1.217 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.226 0.774 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.726 7.980 -9.907 13.571 hybrid contribution 0.405 0.862 -1.078 1.438 sum -4.321 8.842 -10.985 14.748 Atomic orbital electron populations 1.22424 0.95009 1.02891 1.03048 1.21466 0.93086 0.93333 0.84650 1.21742 1.02130 0.93225 1.02508 1.86529 1.77368 1.29147 1.43469 1.21874 0.82483 1.00659 0.97669 1.46127 1.06346 1.59411 1.28085 1.20879 0.90594 0.77854 0.80833 1.90746 1.69807 1.38922 1.37875 1.21655 0.90997 1.00417 1.02562 1.17863 0.86627 0.97018 0.93124 0.93275 1.21526 1.52741 0.91516 0.94578 0.93722 1.25571 0.94230 1.05114 0.92482 1.70730 1.41299 1.17802 1.24361 0.83684 0.76324 0.75348 0.75696 1.20939 1.21580 1.21725 1.20851 0.98893 0.91103 0.92462 1.20929 0.92350 0.99252 0.99900 1.21017 0.95629 0.99987 0.98192 1.20824 0.98470 1.01532 0.96240 1.20963 0.93810 1.00869 0.98658 1.21072 0.94878 1.00187 0.98710 0.91252 0.91468 0.91966 0.91680 0.91792 0.90922 0.77377 0.91714 0.91256 0.76969 0.91700 0.90271 0.91805 0.86688 0.87448 0.87587 0.87460 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.81 37.16 0.33 -1.11 16 2 C 0.12 1.16 1.07 -90.62 -0.10 1.06 16 3 C -0.14 -1.29 8.62 37.16 0.32 -0.97 16 4 O -0.56 -5.89 12.92 -35.23 -0.46 -6.35 16 5 C 0.10 1.30 4.82 -4.04 -0.02 1.28 16 6 N -0.74 -11.25 5.19 -60.29 -0.31 -11.57 16 7 C 0.51 10.34 7.58 -10.99 -0.08 10.25 16 8 O -0.50 -12.67 15.02 5.55 0.08 -12.59 16 9 C -0.12 -2.29 4.95 -27.88 -0.14 -2.43 16 10 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 11 H 0.05 1.35 6.59 -51.93 -0.34 1.00 16 12 C -0.57 -15.55 6.35 -34.44 -0.22 -15.77 16 13 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 14 C 0.03 0.91 5.45 -17.83 -0.10 0.82 16 15 N -0.91 -27.92 13.56 55.43 0.75 -27.17 16 16 Si 1.06 26.45 29.91 -169.99 -5.08 21.37 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 21 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 22 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 23 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.13 -2.74 9.18 -39.58 -0.36 -3.11 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.38 3.01 9.05 45.56 0.41 3.42 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 5.10 6.99 -40.82 -0.29 4.82 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.47 7.96 -51.93 -0.41 1.06 16 38 H 0.27 8.21 6.24 -40.82 -0.25 7.96 16 39 H 0.12 2.33 7.85 -52.48 -0.41 1.92 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -34.27 355.89 -8.07 -42.34 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.91 Total: 9.22 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.50 Total: -20.62 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.44 Total: -38.74 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.37 Total: -18.94 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.08 Total: 21.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.27 -8.07 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.092 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds