Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 O 1.42897 * 109.46956 * 239.99968 * 2 1 3 5 5 C 1.53005 * 109.47097 * 120.00272 * 2 1 3 6 6 N 1.46502 * 109.46864 * 184.99483 * 5 2 1 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.09001 * 109.47028 * 299.99821 * 1 2 3 27 27 H 1.09001 * 109.47407 * 59.99863 * 1 2 3 28 28 H 1.09004 * 109.47634 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46652 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47285 * 300.00199 * 3 2 1 31 31 H 1.09003 * 109.47006 * 60.00694 * 3 2 1 32 32 H 0.96705 * 114.00571 * 300.00543 * 4 2 1 33 33 H 1.08998 * 109.47146 * 64.99935 * 5 2 1 34 34 H 1.08995 * 109.46642 * 304.99562 * 5 2 1 35 35 H 0.97002 * 120.00062 * 0.02562 * 6 5 2 36 36 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 37 37 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 38 38 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 39 39 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 40 40 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 41 41 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 42 42 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6180 1.3108 7 6 4.1730 -1.1828 2.3329 8 8 3.5698 -1.7770 3.2014 9 6 5.6748 -1.0761 2.3966 10 6 6.1849 -1.7975 3.6458 11 1 5.6704 -1.4096 4.5249 12 6 5.9161 -3.2749 3.5177 13 1 5.8497 -3.7288 2.5399 14 6 5.7551 -4.0469 4.6485 15 7 5.9659 -3.5245 5.8368 16 14 5.2447 -5.8371 4.4924 17 1 5.1479 -6.4438 5.8443 18 1 3.9244 -5.9183 3.8177 19 1 6.2561 -6.5720 3.6912 20 6 7.6673 -1.5672 3.7889 21 6 8.5403 -2.0787 2.8470 22 6 9.8998 -1.8636 2.9759 23 6 10.3869 -1.1449 4.0515 24 6 9.5143 -0.6378 4.9961 25 6 8.1545 -0.8492 4.8649 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.7209 -1.5952 -1.2330 33 1 1.7516 -1.7716 1.2056 34 1 1.6054 -0.2618 2.1369 35 1 3.9824 -0.1425 0.6164 36 1 5.9629 -0.0258 2.4402 37 1 6.1098 -1.5356 1.5091 38 1 6.3087 -2.6204 5.9154 39 1 8.1601 -2.6438 2.0088 40 1 10.5814 -2.2596 2.2377 41 1 11.4492 -0.9791 4.1536 42 1 9.8948 -0.0759 5.8362 43 1 7.4728 -0.4529 5.6028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356258465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -104.489293 kcal Electronic energy + Delta-G solvation = -23415.291482 eV Core-core repulsion = 20037.604526 eV Total energy + Delta-G solvation = -3377.686956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94168 -39.98507 -39.05811 -36.16897 -35.20925 -33.38452 -32.92606 -31.61394 -30.56793 -28.36294 -27.87285 -26.30880 -24.49739 -23.19798 -21.82339 -21.50462 -21.03764 -18.91293 -18.25266 -17.78517 -17.18116 -16.72753 -16.47214 -15.96995 -15.74294 -15.65615 -15.49607 -15.21724 -14.68260 -14.47126 -14.06229 -14.02770 -13.75542 -13.52246 -13.43855 -13.18258 -13.06413 -12.94761 -12.64693 -12.63153 -12.60842 -12.08580 -11.96209 -11.73272 -11.70303 -11.51494 -11.12356 -10.75522 -10.58043 -10.36286 -9.99683 -9.64673 -9.27637 -8.45155 -6.11842 0.67281 0.73264 1.47055 1.57300 1.73417 1.87207 2.31372 2.61609 3.10299 3.28871 3.35870 3.63049 3.86050 3.99879 4.08646 4.13052 4.27985 4.29300 4.42397 4.46498 4.51246 4.60470 4.66564 4.74357 4.82379 4.84341 4.86822 4.91092 5.00334 5.08860 5.20782 5.22824 5.28897 5.40163 5.42446 5.56748 5.74132 5.81647 5.94303 6.23585 6.30404 6.39854 6.67271 6.76622 6.78102 7.49880 7.63354 8.95017 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.004741 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.939649 B = 5903.945403 C = 7216.635660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 C -0.142 4.142 4 O -0.568 6.568 5 C 0.094 3.906 6 N -0.720 5.720 7 C 0.510 3.490 8 O -0.562 6.562 9 C -0.111 4.111 10 C 0.075 3.925 11 H 0.004 0.996 12 C -0.557 4.557 13 H 0.038 0.962 14 C -0.026 4.026 15 N -0.943 5.943 16 Si 1.097 2.903 17 H -0.288 1.288 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.389 0.611 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 9.915 -13.542 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.084 3.916 3 C -0.199 4.199 4 O -0.376 6.376 5 C -0.030 4.030 6 N -0.376 5.376 7 C 0.297 3.703 8 O -0.439 6.439 9 C -0.151 4.151 10 C 0.056 3.944 11 H 0.022 0.978 12 C -0.595 4.595 13 H 0.056 0.944 14 C -0.224 4.224 15 N -0.581 5.581 16 Si 0.922 3.078 17 H -0.214 1.214 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.056 4.056 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.171 4.171 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.238 0.762 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.247 0.753 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.281 8.720 -12.158 15.317 hybrid contribution -0.002 0.753 -0.481 0.893 sum -3.283 9.472 -12.640 16.133 Atomic orbital electron populations 1.22395 0.93245 1.03483 1.03874 1.21417 0.94262 0.93157 0.82728 1.21797 1.01840 0.92738 1.03508 1.86510 1.77725 1.30154 1.43243 1.22075 0.80936 1.00532 0.99466 1.45892 1.07380 1.57589 1.26704 1.20990 0.90873 0.77383 0.81017 1.90725 1.70824 1.42050 1.40340 1.21565 0.90914 1.01636 1.01018 1.17683 0.88150 0.95435 0.93173 0.97758 1.21779 1.50711 0.93250 0.93716 0.94381 1.26747 0.94656 1.08453 0.92546 1.70815 1.44323 1.17679 1.25327 0.83205 0.76765 0.72093 0.75769 1.21373 1.21199 1.19182 1.20620 0.97630 0.93333 0.94065 1.21006 0.93609 0.99763 0.99681 1.21409 0.94849 0.99024 0.98995 1.21313 1.00357 0.99605 0.94898 1.21304 0.92599 1.00553 0.99819 1.21130 0.96374 1.01254 0.98344 0.90786 0.90240 0.91590 0.92193 0.90531 0.90265 0.76155 0.92909 0.91989 0.75253 0.89040 0.88752 0.92948 0.86933 0.83963 0.83505 0.84641 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.81 71.98 0.63 -1.85 16 2 C 0.13 2.32 1.07 -10.79 -0.01 2.31 16 3 C -0.14 -2.36 8.62 71.98 0.62 -1.74 16 4 O -0.57 -10.92 12.92 -148.98 -1.93 -12.85 16 5 C 0.09 2.49 4.82 86.38 0.42 2.90 16 6 N -0.72 -21.59 5.19 -463.05 -2.40 -24.00 16 7 C 0.51 21.09 7.58 87.66 0.66 21.75 16 8 O -0.56 -29.80 15.02 -3.04 -0.05 -29.85 16 9 C -0.11 -4.45 4.95 29.85 0.15 -4.30 16 10 C 0.07 3.77 1.23 -12.28 -0.02 3.75 16 11 H 0.00 0.25 6.59 -2.39 -0.02 0.23 16 12 C -0.56 -31.55 6.35 25.60 0.16 -31.38 16 13 H 0.04 2.14 7.82 -2.91 -0.02 2.12 16 14 C -0.03 -1.55 5.45 84.65 0.46 -1.09 16 15 N -0.94 -60.78 13.56 21.44 0.29 -60.49 16 16 Si 1.10 54.49 29.91 68.60 2.05 56.54 16 17 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C -0.06 -2.54 4.53 -19.87 -0.09 -2.63 16 21 C -0.12 -4.94 8.90 22.27 0.20 -4.74 16 22 C -0.12 -4.15 10.05 22.27 0.22 -3.92 16 23 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 24 C -0.12 -4.37 10.05 22.27 0.22 -4.14 16 25 C -0.15 -6.54 9.18 22.27 0.20 -6.33 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.05 6.58 -2.38 -0.02 1.03 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.39 5.57 9.05 -74.05 -0.67 4.90 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 10.03 6.99 -92.71 -0.65 9.39 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.46 7.96 -2.39 -0.02 3.44 16 38 H 0.26 16.76 6.24 -92.70 -0.58 16.18 16 39 H 0.11 4.48 7.85 -2.91 -0.02 4.46 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.10 4.23 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -77.98 355.89 1.91 -76.07 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.12 Total: 30.24 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.06 Total: -35.67 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.11 Total: -84.48 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.97 Total: -42.70 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.05 Total: 56.54 kcal Total: -77.98 1.91 -76.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.420 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds