Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 O 1.42904 * 109.46954 * 240.00689 * 2 1 3 5 5 C 1.52995 * 109.47311 * 120.00641 * 2 1 3 6 6 N 1.46506 * 109.47121 * 184.99864 * 5 2 1 7 7 C 1.34769 * 119.99929 * 179.97438 * 6 5 2 8 8 O 1.21284 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47348 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47385 * 53.81101 * 10 9 7 12 12 C 1.50707 * 109.46800 * 293.80633 * 10 9 7 13 13 H 1.07996 * 119.99939 * 324.79144 * 12 10 9 14 14 C 1.37876 * 119.99516 * 144.79724 * 12 10 9 15 15 N 1.31517 * 119.99498 * 181.40280 * 14 12 10 16 16 Si 1.86799 * 120.00347 * 1.40222 * 14 12 10 17 17 H 1.48496 * 109.47059 * 267.09616 * 16 14 12 18 18 H 1.48498 * 109.46945 * 27.10055 * 16 14 12 19 19 H 1.48502 * 109.46861 * 147.09689 * 16 14 12 20 20 C 1.50699 * 109.46966 * 173.80920 * 10 9 7 21 21 C 1.38237 * 120.00135 * 66.64777 * 20 10 9 22 22 C 1.38237 * 120.00124 * 179.80917 * 21 20 10 23 23 C 1.38241 * 119.99834 * 0.39586 * 22 21 20 24 24 C 1.38239 * 119.99727 * 359.85702 * 23 22 21 25 25 C 1.38229 * 120.00171 * 359.95425 * 24 23 22 26 26 H 1.08997 * 109.47081 * 299.99366 * 1 2 3 27 27 H 1.09001 * 109.47088 * 59.99717 * 1 2 3 28 28 H 1.09004 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47001 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47213 * 300.00502 * 3 2 1 31 31 H 1.09005 * 109.46994 * 60.00357 * 3 2 1 32 32 H 0.96701 * 113.99811 * 299.99889 * 4 2 1 33 33 H 1.08999 * 109.47126 * 65.00048 * 5 2 1 34 34 H 1.08996 * 109.46862 * 304.99750 * 5 2 1 35 35 H 0.97005 * 119.99423 * 0.02562 * 6 5 2 36 36 H 1.09004 * 109.46561 * 60.00018 * 9 7 6 37 37 H 1.09003 * 109.46933 * 300.01124 * 9 7 6 38 38 H 0.96996 * 119.99967 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.00352 * 359.97438 * 21 20 10 40 40 H 1.07995 * 120.00255 * 180.23001 * 22 21 20 41 41 H 1.07995 * 119.99860 * 179.82910 * 23 22 21 42 42 H 1.08003 * 119.99758 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5002 -0.6180 1.3108 7 6 4.1731 -1.1828 2.3327 8 8 3.5700 -1.7771 3.2011 9 6 5.6751 -1.0770 2.3959 10 6 6.1851 -1.7982 3.6451 11 1 5.8042 -2.8194 3.6561 12 6 5.7076 -1.0706 4.8754 13 1 5.6263 0.0063 4.8683 14 6 5.3746 -1.7797 6.0099 15 7 4.9316 -1.1470 7.0744 16 14 5.5527 -3.6390 6.0351 17 1 4.2649 -4.2650 5.6414 18 1 6.6141 -4.0476 5.0804 19 1 5.9206 -4.0825 7.4038 20 6 7.6918 -1.8244 3.6300 21 6 8.4048 -0.6465 3.7532 22 6 9.7869 -0.6709 3.7434 23 6 10.4560 -1.8723 3.6021 24 6 9.7429 -3.0496 3.4737 25 6 8.3609 -3.0256 3.4874 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.7210 -1.5951 -1.2331 33 1 1.7517 -1.7716 1.2053 34 1 1.6055 -0.2619 2.1368 35 1 3.9824 -0.1424 0.6164 36 1 5.9638 -0.0268 2.4389 37 1 6.1094 -1.5370 1.5082 38 1 4.6970 -1.6459 7.8725 39 1 7.8821 0.2926 3.8598 40 1 10.3440 0.2489 3.8434 41 1 11.5358 -1.8910 3.5917 42 1 10.2656 -3.9882 3.3629 43 1 7.8038 -3.9454 3.3875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356258467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -74.486775 kcal Electronic energy + Delta-G solvation = -23442.590643 eV Core-core repulsion = 20066.204694 eV Total energy + Delta-G solvation = -3376.385950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.50052 -38.62994 -37.83217 -34.31040 -33.75952 -32.08578 -31.60189 -30.18991 -29.09943 -27.59308 -26.78439 -25.04562 -22.54987 -21.83645 -20.58207 -20.17715 -19.14535 -17.17972 -16.91220 -16.43817 -15.82933 -15.56335 -15.04244 -14.65833 -14.47335 -14.15623 -14.05211 -13.76631 -13.05367 -12.92686 -12.74034 -12.70616 -12.47699 -12.36938 -12.26109 -12.16071 -11.91347 -11.79075 -11.58738 -11.00433 -10.87106 -10.73615 -10.51735 -10.36127 -10.16441 -9.85293 -9.59257 -9.13912 -8.91584 -8.57191 -8.39752 -8.18277 -7.79382 -5.95891 -3.93072 2.11594 2.16489 3.44883 3.49311 3.51024 3.52246 3.63173 4.11298 4.54195 4.57737 4.60723 4.72125 4.79790 5.32287 5.37972 5.44108 5.53519 5.57284 5.58442 5.61801 5.70601 5.72745 5.80632 5.88709 5.95809 5.97831 6.04094 6.09519 6.13183 6.26903 6.35253 6.64406 6.71346 6.85715 6.90382 7.04489 7.16089 7.29206 7.47043 7.60077 7.75265 7.85085 8.08384 8.55402 9.01985 9.05343 9.69195 11.17187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.004693 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.326275 B = 5965.126108 C = 6957.117733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 C -0.139 4.139 4 O -0.559 6.559 5 C 0.098 3.902 6 N -0.742 5.742 7 C 0.513 3.487 8 O -0.504 6.504 9 C -0.116 4.116 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.487 4.487 13 H 0.070 0.930 14 C 0.085 3.915 15 N -0.900 5.900 16 Si 0.870 3.130 17 H -0.277 1.277 18 H -0.255 1.255 19 H -0.295 1.295 20 C -0.039 4.039 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.128 4.128 25 C -0.135 4.135 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.377 0.623 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 1.716 -15.409 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.075 3.925 3 C -0.197 4.197 4 O -0.365 6.365 5 C -0.027 4.027 6 N -0.398 5.398 7 C 0.299 3.701 8 O -0.376 6.376 9 C -0.157 4.157 10 C 0.037 3.963 11 H 0.067 0.933 12 C -0.524 4.524 13 H 0.088 0.912 14 C -0.117 4.117 15 N -0.538 5.538 16 Si 0.698 3.302 17 H -0.203 1.203 18 H -0.180 1.180 19 H -0.222 1.222 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.146 4.146 23 C -0.168 4.168 24 C -0.146 4.146 25 C -0.153 4.153 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.224 0.776 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.894 1.825 -14.646 14.880 hybrid contribution -0.044 -1.306 0.164 1.317 sum -1.938 0.519 -14.482 14.620 Atomic orbital electron populations 1.22423 0.95013 1.02801 1.03137 1.21478 0.93096 0.93419 0.84527 1.21749 1.02182 0.93127 1.02594 1.86538 1.77355 1.29008 1.43614 1.21878 0.82482 1.00437 0.97894 1.46088 1.06383 1.59503 1.27867 1.20842 0.90598 0.78279 0.80340 1.90740 1.69923 1.40360 1.36598 1.21655 0.90914 1.02891 1.00205 1.18127 0.86734 0.97709 0.93724 0.93261 1.20594 1.42904 0.94432 0.94473 0.91158 1.24883 0.93545 0.97958 0.95327 1.69889 1.44466 1.35903 1.03532 0.86951 0.79149 0.87094 0.76974 1.20300 1.17960 1.22178 1.20765 0.98267 0.92130 0.92854 1.20982 0.93020 0.98738 0.99083 1.21057 0.94819 0.97263 1.01496 1.20862 0.98721 0.93065 1.04105 1.20961 0.94336 0.97434 1.01842 1.21148 0.93975 0.97990 1.02211 0.91132 0.91491 0.92066 0.91625 0.91836 0.90757 0.77572 0.91919 0.90926 0.76914 0.89814 0.91390 0.92926 0.86194 0.87201 0.87455 0.87419 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.82 37.16 0.33 -1.13 16 2 C 0.12 1.16 1.07 -90.62 -0.10 1.07 16 3 C -0.14 -1.35 8.62 37.16 0.32 -1.03 16 4 O -0.56 -5.66 12.93 -35.23 -0.46 -6.11 16 5 C 0.10 1.30 4.82 -4.04 -0.02 1.28 16 6 N -0.74 -11.07 5.19 -60.29 -0.31 -11.38 16 7 C 0.51 10.12 7.58 -10.99 -0.08 10.04 16 8 O -0.50 -12.50 15.02 5.55 0.08 -12.42 16 9 C -0.12 -2.19 4.96 -27.88 -0.14 -2.33 16 10 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 11 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 12 C -0.49 -13.42 6.88 -34.44 -0.24 -13.66 16 13 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 14 C 0.08 2.51 5.47 -17.82 -0.10 2.42 16 15 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 16 Si 0.87 22.81 27.00 -169.99 -4.59 18.22 16 17 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.26 -6.17 4.72 56.52 0.27 -5.90 16 19 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 20 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 21 C -0.10 -1.97 8.93 -39.58 -0.35 -2.32 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 23 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 25 C -0.14 -2.66 8.70 -39.59 -0.34 -3.01 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.38 2.74 9.05 45.56 0.41 3.15 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 4.98 6.99 -40.82 -0.29 4.70 16 36 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 39 H 0.12 2.34 7.87 -52.49 -0.41 1.92 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.11 2.14 7.12 -52.48 -0.37 1.77 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -34.56 351.10 -7.74 -42.30 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.02 Total: 8.50 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.51 Total: -16.86 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.46 Total: -38.92 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.37 Total: -18.53 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.59 Total: 18.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.56 -7.74 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.186 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds