Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 O 1.42904 * 109.46954 * 240.00689 * 2 1 3 5 5 C 1.52995 * 109.47311 * 120.00641 * 2 1 3 6 6 N 1.46506 * 109.47121 * 184.99864 * 5 2 1 7 7 C 1.34769 * 119.99929 * 179.97438 * 6 5 2 8 8 O 1.21284 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47348 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47385 * 53.81101 * 10 9 7 12 12 C 1.50707 * 109.46800 * 293.80633 * 10 9 7 13 13 H 1.07996 * 119.99939 * 324.79144 * 12 10 9 14 14 C 1.37876 * 119.99516 * 144.79724 * 12 10 9 15 15 N 1.31517 * 119.99498 * 181.40280 * 14 12 10 16 16 Si 1.86799 * 120.00347 * 1.40222 * 14 12 10 17 17 H 1.48496 * 109.47059 * 267.09616 * 16 14 12 18 18 H 1.48498 * 109.46945 * 27.10055 * 16 14 12 19 19 H 1.48502 * 109.46861 * 147.09689 * 16 14 12 20 20 C 1.50699 * 109.46966 * 173.80920 * 10 9 7 21 21 C 1.38237 * 120.00135 * 66.64777 * 20 10 9 22 22 C 1.38237 * 120.00124 * 179.80917 * 21 20 10 23 23 C 1.38241 * 119.99834 * 0.39586 * 22 21 20 24 24 C 1.38239 * 119.99727 * 359.85702 * 23 22 21 25 25 C 1.38229 * 120.00171 * 359.95425 * 24 23 22 26 26 H 1.08997 * 109.47081 * 299.99366 * 1 2 3 27 27 H 1.09001 * 109.47088 * 59.99717 * 1 2 3 28 28 H 1.09004 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47001 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47213 * 300.00502 * 3 2 1 31 31 H 1.09005 * 109.46994 * 60.00357 * 3 2 1 32 32 H 0.96701 * 113.99811 * 299.99889 * 4 2 1 33 33 H 1.08999 * 109.47126 * 65.00048 * 5 2 1 34 34 H 1.08996 * 109.46862 * 304.99750 * 5 2 1 35 35 H 0.97005 * 119.99423 * 0.02562 * 6 5 2 36 36 H 1.09004 * 109.46561 * 60.00018 * 9 7 6 37 37 H 1.09003 * 109.46933 * 300.01124 * 9 7 6 38 38 H 0.96996 * 119.99967 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.00352 * 359.97438 * 21 20 10 40 40 H 1.07995 * 120.00255 * 180.23001 * 22 21 20 41 41 H 1.07995 * 119.99860 * 179.82910 * 23 22 21 42 42 H 1.08003 * 119.99758 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5002 -0.6180 1.3108 7 6 4.1731 -1.1828 2.3327 8 8 3.5700 -1.7771 3.2011 9 6 5.6751 -1.0770 2.3959 10 6 6.1851 -1.7982 3.6451 11 1 5.8042 -2.8194 3.6561 12 6 5.7076 -1.0706 4.8754 13 1 5.6263 0.0063 4.8683 14 6 5.3746 -1.7797 6.0099 15 7 4.9316 -1.1470 7.0744 16 14 5.5527 -3.6390 6.0351 17 1 4.2649 -4.2650 5.6414 18 1 6.6141 -4.0476 5.0804 19 1 5.9206 -4.0825 7.4038 20 6 7.6918 -1.8244 3.6300 21 6 8.4048 -0.6465 3.7532 22 6 9.7869 -0.6709 3.7434 23 6 10.4560 -1.8723 3.6021 24 6 9.7429 -3.0496 3.4737 25 6 8.3609 -3.0256 3.4874 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.7210 -1.5951 -1.2331 33 1 1.7517 -1.7716 1.2053 34 1 1.6055 -0.2619 2.1368 35 1 3.9824 -0.1424 0.6164 36 1 5.9638 -0.0268 2.4389 37 1 6.1094 -1.5370 1.5082 38 1 4.6970 -1.6459 7.8725 39 1 7.8821 0.2926 3.8598 40 1 10.3440 0.2489 3.8434 41 1 11.5358 -1.8910 3.5917 42 1 10.2656 -3.9882 3.3629 43 1 7.8038 -3.9454 3.3875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356258467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -99.873302 kcal Electronic energy + Delta-G solvation = -23443.691486 eV Core-core repulsion = 20066.204694 eV Total energy + Delta-G solvation = -3377.486792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90686 -39.96210 -39.03289 -35.93494 -35.16255 -33.72906 -32.99393 -31.59361 -30.53397 -28.40772 -28.30906 -26.58512 -24.18032 -23.27035 -21.67484 -21.47463 -20.72977 -19.00748 -18.35439 -17.77066 -17.15911 -16.66219 -16.55796 -16.10131 -15.92870 -15.52475 -15.33086 -15.20316 -14.78658 -14.34073 -14.22077 -14.01196 -13.84821 -13.49744 -13.43412 -13.30420 -13.05791 -12.98425 -12.81335 -12.64403 -12.59849 -12.05956 -11.89541 -11.78474 -11.68664 -11.48607 -11.09720 -11.04176 -10.71160 -10.49089 -9.95345 -9.60287 -9.28968 -8.21780 -6.18589 0.69481 0.74303 1.31941 1.36566 1.42321 1.92929 2.35897 2.41811 3.09485 3.24454 3.31573 3.65224 3.87603 4.01444 4.10706 4.14993 4.31351 4.33018 4.44998 4.49422 4.53868 4.63604 4.69953 4.76181 4.85120 4.86910 4.88440 4.92392 5.02317 5.10388 5.20666 5.22734 5.30274 5.39171 5.42047 5.60469 5.69702 5.78045 5.83992 6.04071 6.34119 6.37604 6.72202 6.80753 6.81213 7.45660 7.54429 8.95276 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.004693 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.326275 B = 5965.126108 C = 6957.117733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 C -0.143 4.143 4 O -0.566 6.566 5 C 0.094 3.906 6 N -0.721 5.721 7 C 0.509 3.491 8 O -0.564 6.564 9 C -0.113 4.113 10 C 0.058 3.942 11 H 0.032 0.968 12 C -0.464 4.464 13 H 0.034 0.966 14 C 0.022 3.978 15 N -0.954 5.954 16 Si 0.920 3.080 17 H -0.291 1.291 18 H -0.223 1.223 19 H -0.297 1.297 20 C -0.063 4.063 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.151 4.151 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.390 0.610 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.411 0.589 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.257 0.743 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 1.180 -18.071 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.086 3.914 3 C -0.200 4.200 4 O -0.374 6.374 5 C -0.030 4.030 6 N -0.376 5.376 7 C 0.296 3.704 8 O -0.442 6.442 9 C -0.153 4.153 10 C 0.038 3.962 11 H 0.050 0.950 12 C -0.502 4.502 13 H 0.052 0.948 14 C -0.174 4.174 15 N -0.596 5.596 16 Si 0.747 3.253 17 H -0.218 1.218 18 H -0.146 1.146 19 H -0.224 1.224 20 C -0.064 4.064 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.170 4.170 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.239 0.761 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.325 1.305 -17.395 17.447 hybrid contribution -0.657 -1.044 0.847 1.496 sum -0.333 0.261 -16.549 16.554 Atomic orbital electron populations 1.22397 0.93383 1.03554 1.03712 1.21361 0.94150 0.93034 0.82836 1.21797 1.01926 0.93000 1.03297 1.86516 1.77634 1.30168 1.43044 1.22054 0.81114 1.00712 0.99142 1.45878 1.07297 1.57766 1.26669 1.21067 0.91110 0.77781 0.80421 1.90721 1.70989 1.43363 1.39084 1.21591 0.90518 1.03336 0.99819 1.18002 0.88636 0.96343 0.93190 0.94955 1.20815 1.40571 0.92926 0.95840 0.94764 1.25627 0.94413 1.01962 0.95429 1.70032 1.47845 1.37311 1.04429 0.86157 0.79275 0.82582 0.77331 1.21796 1.14610 1.22387 1.20489 0.96652 0.93577 0.95689 1.21013 0.94490 0.97849 1.00309 1.21396 0.93755 0.99184 1.00059 1.21339 1.00722 0.92116 1.01596 1.21337 0.93300 0.99359 1.00261 1.21260 0.95458 0.97194 1.03049 0.91197 0.90237 0.91322 0.92080 0.90462 0.90802 0.76089 0.92226 0.92776 0.75174 0.88774 0.87852 0.93381 0.87365 0.84378 0.83591 0.84194 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 8.82 71.98 0.63 -1.95 16 2 C 0.13 2.38 1.07 -10.79 -0.01 2.37 16 3 C -0.14 -2.57 8.62 71.98 0.62 -1.95 16 4 O -0.57 -10.22 12.93 -148.98 -1.93 -12.15 16 5 C 0.09 2.50 4.82 86.38 0.42 2.91 16 6 N -0.72 -21.23 5.19 -463.06 -2.40 -23.63 16 7 C 0.51 20.35 7.58 87.66 0.66 21.01 16 8 O -0.56 -29.08 15.02 -3.04 -0.05 -29.12 16 9 C -0.11 -4.21 4.96 29.85 0.15 -4.06 16 10 C 0.06 2.67 1.17 -12.29 -0.01 2.65 16 11 H 0.03 1.60 4.94 -2.39 -0.01 1.58 16 12 C -0.46 -26.56 6.88 25.60 0.18 -26.39 16 13 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 14 C 0.02 1.33 5.47 84.65 0.46 1.79 16 15 N -0.95 -63.13 13.96 21.45 0.30 -62.84 16 16 Si 0.92 48.46 27.00 68.60 1.85 50.31 16 17 H -0.29 -15.85 7.11 99.48 0.71 -15.15 16 18 H -0.22 -10.45 4.72 99.48 0.47 -9.98 16 19 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 20 C -0.06 -2.61 4.65 -19.87 -0.09 -2.70 16 21 C -0.12 -4.50 8.93 22.27 0.20 -4.31 16 22 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 23 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 24 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 25 C -0.15 -5.60 8.70 22.27 0.19 -5.41 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.13 6.57 -2.39 -0.02 1.12 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.39 4.83 9.05 -74.06 -0.67 4.16 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 9.75 6.99 -92.70 -0.65 9.11 16 36 H 0.09 3.30 8.05 -2.38 -0.02 3.28 16 37 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 39 H 0.11 4.26 7.87 -2.91 -0.02 4.23 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.11 4.01 7.12 -2.91 -0.02 3.99 16 Total: -1.00 -79.04 351.10 1.30 -77.74 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.54 Total: 26.63 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.07 Total: -26.94 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.10 Total: -86.46 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.97 Total: -41.27 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.85 Total: 50.31 kcal Total: -79.04 1.30 -77.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.135 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds