Wall clock time and date at job start Tue Mar 31 2020 07:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36868 * 119.99746 * 2 1 4 4 H 1.08004 * 119.99628 * 187.79794 * 3 2 1 5 5 C 1.39048 * 120.00304 * 7.79828 * 3 2 1 6 6 N 1.31364 * 119.99929 * 7.90512 * 5 3 2 7 7 Si 1.86799 * 120.00021 * 187.90250 * 5 3 2 8 8 H 1.48498 * 109.46920 * 89.99804 * 7 5 3 9 9 H 1.48495 * 109.47260 * 209.99999 * 7 5 3 10 10 H 1.48497 * 109.46874 * 330.00344 * 7 5 3 11 11 C 1.34785 * 119.99744 * 179.97438 * 2 1 3 12 12 O 1.21585 * 119.99327 * 183.76531 * 11 2 1 13 13 C 1.47726 * 119.99887 * 3.76274 * 11 2 1 14 14 C 1.39668 * 120.15409 * 305.52020 * 13 11 2 15 15 C 1.37908 * 119.84233 * 180.27876 * 14 13 11 16 16 C 1.38405 * 120.15613 * 359.74922 * 15 14 13 17 17 C 1.38349 * 120.30076 * 359.97438 * 16 15 14 18 18 C 1.37961 * 120.15534 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.07622 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.46998 * 0.02562 * 19 18 17 21 21 C 1.42907 * 113.99696 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47181 * 59.99664 * 21 20 19 23 23 C 1.52994 * 109.47076 * 180.02562 * 21 20 19 24 24 C 1.53002 * 109.46939 * 299.99881 * 21 20 19 25 25 H 1.09004 * 109.46858 * 174.14924 * 1 2 3 26 26 H 1.08997 * 109.47235 * 294.15370 * 1 2 3 27 27 H 1.08995 * 109.46859 * 54.15894 * 1 2 3 28 28 H 0.97001 * 119.99934 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.07617 * 0.02562 * 14 13 11 30 30 H 1.08003 * 119.92400 * 179.76713 * 15 14 13 31 31 H 1.07997 * 119.84807 * 179.97438 * 16 15 14 32 32 H 1.08008 * 119.92101 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.46802 * 239.99919 * 19 18 17 34 34 H 1.09001 * 109.46611 * 120.00150 * 19 18 17 35 35 H 1.09004 * 109.47219 * 60.00290 * 22 21 20 36 36 H 1.08997 * 109.46957 * 179.97438 * 22 21 20 37 37 H 1.08995 * 109.47227 * 300.00390 * 22 21 20 38 38 H 1.08995 * 109.47541 * 59.99949 * 23 21 20 39 39 H 1.09004 * 109.47342 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.46923 * 299.99464 * 23 21 20 41 41 H 1.09006 * 109.47407 * 60.00118 * 24 21 20 42 42 H 1.09000 * 109.47387 * 179.97438 * 24 21 20 43 43 H 1.09003 * 109.47231 * 300.00020 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2219 1.1896 -0.1269 5 6 1.4638 2.3840 0.1634 6 7 0.1870 2.3735 0.4720 7 14 2.3584 4.0091 -0.0559 8 1 2.2666 4.4370 -1.4750 9 1 1.7344 5.0389 0.8130 10 1 3.7855 3.8430 0.3196 11 6 2.1389 -1.1673 0.0005 12 8 3.3528 -1.1683 0.0697 13 6 1.4026 -2.4453 -0.0829 14 6 0.3901 -2.7328 0.8352 15 6 -0.2893 -3.9302 0.7549 16 6 0.0267 -4.8438 -0.2355 17 6 1.0247 -4.5630 -1.1516 18 6 1.7123 -3.3689 -1.0831 19 6 2.7995 -3.0651 -2.0815 20 8 2.9294 -4.1589 -2.9918 21 6 3.9388 -3.9710 -3.9858 22 6 5.2966 -3.7861 -3.3053 23 6 3.9887 -5.1968 -4.9001 24 6 3.6114 -2.7287 -4.8167 25 1 -0.3633 -1.0224 -0.1048 26 1 -0.3633 0.4205 0.9377 27 1 -0.3633 0.6017 -0.8330 28 1 -0.2914 3.2097 0.5857 29 1 0.1426 -2.0208 1.6085 30 1 -1.0699 -4.1555 1.4665 31 1 -0.5082 -5.7802 -0.2935 32 1 1.2665 -5.2806 -1.9218 33 1 3.7429 -2.9144 -1.5568 34 1 2.5428 -2.1614 -2.6343 35 1 5.5299 -4.6712 -2.7134 36 1 6.0665 -3.6433 -4.0635 37 1 5.2607 -2.9127 -2.6542 38 1 3.0214 -5.3281 -5.3849 39 1 4.7589 -5.0537 -5.6580 40 1 4.2218 -6.0821 -4.3084 41 1 3.5756 -1.8552 -4.1656 42 1 4.3815 -2.5851 -5.5746 43 1 2.6441 -2.8604 -5.3015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358423394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:00 Heat of formation + Delta-G solvation = -46.079374 kcal Electronic energy + Delta-G solvation = -24015.851630 eV Core-core repulsion = 20640.697518 eV Total energy + Delta-G solvation = -3375.154112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.74692 -38.62741 -37.38459 -34.78384 -33.62220 -31.83851 -31.05088 -30.38269 -27.63481 -27.31453 -26.40297 -25.64516 -24.60600 -22.59077 -21.24996 -19.67396 -19.16860 -17.08559 -16.51281 -16.37079 -15.85437 -15.22382 -14.96260 -14.73770 -14.27622 -14.16294 -13.90211 -13.63274 -13.39317 -13.16430 -12.78957 -12.50853 -12.30637 -12.20885 -11.89324 -11.79074 -11.69735 -11.64859 -11.51907 -11.16262 -11.08695 -11.00286 -10.80639 -10.57303 -10.39919 -10.30117 -10.25066 -9.46119 -9.12755 -8.54400 -8.27493 -8.15481 -7.89976 -6.31658 -3.87188 1.57456 1.78443 3.11663 3.20482 3.26133 3.76031 3.78144 4.04995 4.25952 4.84485 4.87917 4.89660 5.06909 5.11586 5.26242 5.32083 5.42733 5.54087 5.59425 5.60306 5.67210 5.73701 5.81690 5.84473 5.88773 5.91221 5.99628 6.04778 6.13720 6.27876 6.33535 6.36621 6.43274 6.49361 6.76640 6.84898 6.95324 7.03611 7.33598 7.36906 7.50301 7.52195 8.00724 8.42336 9.11362 9.36752 9.92338 10.61696 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.005411 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.311924 B = 5173.814249 C = 6650.504166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.430 5.430 3 C -0.300 4.300 4 H 0.106 0.894 5 C 0.028 3.972 6 N -0.880 5.880 7 Si 0.932 3.068 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.466 3.534 12 O -0.593 6.593 13 C -0.084 4.084 14 C -0.094 4.094 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.054 4.054 19 C 0.099 3.901 20 O -0.378 6.378 21 C 0.109 3.891 22 C -0.181 4.181 23 C -0.135 4.135 24 C -0.181 4.181 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.268 0.732 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -11.655 -6.820 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.145 5.145 3 C -0.428 4.428 4 H 0.123 0.877 5 C -0.175 4.175 6 N -0.520 5.520 7 Si 0.758 3.242 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.255 3.745 12 O -0.480 6.480 13 C -0.087 4.087 14 C -0.113 4.113 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.055 4.055 19 C 0.024 3.976 20 O -0.299 6.299 21 C 0.070 3.930 22 C -0.238 4.238 23 C -0.192 4.192 24 C -0.238 4.238 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.547 -11.598 -6.737 13.424 hybrid contribution 0.222 1.214 -0.015 1.234 sum 0.769 -10.384 -6.753 12.411 Atomic orbital electron populations 1.22027 0.80239 0.97490 1.04427 1.43656 1.06224 1.04680 1.59984 1.19825 0.94087 0.82055 1.46876 0.87653 1.25369 0.95910 0.99904 0.96268 1.70101 1.08448 1.27563 1.45913 0.85826 0.79534 0.80538 0.78262 1.20279 1.20780 1.19272 1.17824 0.87330 0.82962 0.86425 1.90591 1.13318 1.86648 1.57416 1.19974 0.96717 0.96062 0.95948 1.21286 0.94597 0.96904 0.98500 1.21017 1.00478 0.94192 0.99086 1.21141 0.98114 0.99236 0.95694 1.20855 0.95806 0.96555 0.99234 1.19620 0.96598 0.94226 0.95061 1.21281 0.97953 0.88931 0.89455 1.87833 1.56732 1.42121 1.43169 1.21416 0.87818 0.95432 0.88333 1.22448 0.96826 1.03152 1.01421 1.21738 1.02267 0.96753 0.98447 1.22450 1.02207 0.98553 1.00613 0.94571 0.90000 0.92494 0.92164 0.85484 0.86199 0.86443 0.85231 0.89921 0.91843 0.91859 0.91840 0.91395 0.91972 0.91402 0.91964 0.91646 0.91760 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 7.97 59.85 0.48 2.83 16 2 N -0.43 -11.18 3.02 -123.31 -0.37 -11.56 16 3 C -0.30 -8.33 9.53 -15.00 -0.14 -8.47 16 4 H 0.11 3.04 7.21 -52.48 -0.38 2.66 16 5 C 0.03 0.74 5.38 -17.45 -0.09 0.64 16 6 N -0.88 -22.88 9.66 55.50 0.54 -22.34 16 7 Si 0.93 20.51 29.56 -169.99 -5.03 15.48 16 8 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 C 0.47 11.74 6.53 -12.38 -0.08 11.66 16 12 O -0.59 -16.55 15.33 5.29 0.08 -16.47 16 13 C -0.08 -1.76 4.84 -104.97 -0.51 -2.26 16 14 C -0.09 -1.71 7.41 -39.17 -0.29 -2.00 16 15 C -0.13 -1.95 10.03 -39.64 -0.40 -2.35 16 16 C -0.12 -1.79 10.04 -39.48 -0.40 -2.18 16 17 C -0.11 -1.73 9.37 -39.64 -0.37 -2.11 16 18 C -0.05 -1.03 5.91 -104.20 -0.62 -1.65 16 19 C 0.10 1.84 4.38 36.01 0.16 2.00 16 20 O -0.38 -6.04 8.47 -35.23 -0.30 -6.34 16 21 C 0.11 1.44 1.14 -90.62 -0.10 1.33 16 22 C -0.18 -2.33 8.25 37.16 0.31 -2.02 16 23 C -0.13 -1.41 8.84 37.15 0.33 -1.08 16 24 C -0.18 -2.31 8.25 37.16 0.31 -2.00 16 25 H 0.04 0.74 4.62 -51.93 -0.24 0.50 16 26 H 0.08 1.98 6.74 -51.93 -0.35 1.63 16 27 H 0.06 1.38 7.44 -51.93 -0.39 0.99 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.13 2.29 7.39 -52.49 -0.39 1.90 16 30 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.94 7.00 -52.48 -0.37 1.57 16 33 H 0.08 1.67 5.51 -51.93 -0.29 1.39 16 34 H 0.06 1.24 6.41 -51.93 -0.33 0.91 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.96 6.54 -51.93 -0.34 0.62 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.02 342.07 -7.70 -37.72 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.35 Total: 6.01 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.42 Total: -7.66 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.16 Total: -33.90 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.22 Total: -22.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.02 -7.70 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358423394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.359 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds