Wall clock time and date at job start Tue Mar 31 2020 07:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36868 * 119.99746 * 2 1 4 4 H 1.08004 * 119.99628 * 187.79794 * 3 2 1 5 5 C 1.39048 * 120.00304 * 7.79828 * 3 2 1 6 6 N 1.31364 * 119.99929 * 7.90512 * 5 3 2 7 7 Si 1.86799 * 120.00021 * 187.90250 * 5 3 2 8 8 H 1.48498 * 109.46920 * 89.99804 * 7 5 3 9 9 H 1.48495 * 109.47260 * 209.99999 * 7 5 3 10 10 H 1.48497 * 109.46874 * 330.00344 * 7 5 3 11 11 C 1.34785 * 119.99744 * 179.97438 * 2 1 3 12 12 O 1.21585 * 119.99327 * 183.76531 * 11 2 1 13 13 C 1.47726 * 119.99887 * 3.76274 * 11 2 1 14 14 C 1.39668 * 120.15409 * 305.52020 * 13 11 2 15 15 C 1.37908 * 119.84233 * 180.27876 * 14 13 11 16 16 C 1.38405 * 120.15613 * 359.74922 * 15 14 13 17 17 C 1.38349 * 120.30076 * 359.97438 * 16 15 14 18 18 C 1.37961 * 120.15534 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.07622 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.46998 * 0.02562 * 19 18 17 21 21 C 1.42907 * 113.99696 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47181 * 59.99664 * 21 20 19 23 23 C 1.52994 * 109.47076 * 180.02562 * 21 20 19 24 24 C 1.53002 * 109.46939 * 299.99881 * 21 20 19 25 25 H 1.09004 * 109.46858 * 174.14924 * 1 2 3 26 26 H 1.08997 * 109.47235 * 294.15370 * 1 2 3 27 27 H 1.08995 * 109.46859 * 54.15894 * 1 2 3 28 28 H 0.97001 * 119.99934 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.07617 * 0.02562 * 14 13 11 30 30 H 1.08003 * 119.92400 * 179.76713 * 15 14 13 31 31 H 1.07997 * 119.84807 * 179.97438 * 16 15 14 32 32 H 1.08008 * 119.92101 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.46802 * 239.99919 * 19 18 17 34 34 H 1.09001 * 109.46611 * 120.00150 * 19 18 17 35 35 H 1.09004 * 109.47219 * 60.00290 * 22 21 20 36 36 H 1.08997 * 109.46957 * 179.97438 * 22 21 20 37 37 H 1.08995 * 109.47227 * 300.00390 * 22 21 20 38 38 H 1.08995 * 109.47541 * 59.99949 * 23 21 20 39 39 H 1.09004 * 109.47342 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.46923 * 299.99464 * 23 21 20 41 41 H 1.09006 * 109.47407 * 60.00118 * 24 21 20 42 42 H 1.09000 * 109.47387 * 179.97438 * 24 21 20 43 43 H 1.09003 * 109.47231 * 300.00020 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2219 1.1896 -0.1269 5 6 1.4638 2.3840 0.1634 6 7 0.1870 2.3735 0.4720 7 14 2.3584 4.0091 -0.0559 8 1 2.2666 4.4370 -1.4750 9 1 1.7344 5.0389 0.8130 10 1 3.7855 3.8430 0.3196 11 6 2.1389 -1.1673 0.0005 12 8 3.3528 -1.1683 0.0697 13 6 1.4026 -2.4453 -0.0829 14 6 0.3901 -2.7328 0.8352 15 6 -0.2893 -3.9302 0.7549 16 6 0.0267 -4.8438 -0.2355 17 6 1.0247 -4.5630 -1.1516 18 6 1.7123 -3.3689 -1.0831 19 6 2.7995 -3.0651 -2.0815 20 8 2.9294 -4.1589 -2.9918 21 6 3.9388 -3.9710 -3.9858 22 6 5.2966 -3.7861 -3.3053 23 6 3.9887 -5.1968 -4.9001 24 6 3.6114 -2.7287 -4.8167 25 1 -0.3633 -1.0224 -0.1048 26 1 -0.3633 0.4205 0.9377 27 1 -0.3633 0.6017 -0.8330 28 1 -0.2914 3.2097 0.5857 29 1 0.1426 -2.0208 1.6085 30 1 -1.0699 -4.1555 1.4665 31 1 -0.5082 -5.7802 -0.2935 32 1 1.2665 -5.2806 -1.9218 33 1 3.7429 -2.9144 -1.5568 34 1 2.5428 -2.1614 -2.6343 35 1 5.5299 -4.6712 -2.7134 36 1 6.0665 -3.6433 -4.0635 37 1 5.2607 -2.9127 -2.6542 38 1 3.0214 -5.3281 -5.3849 39 1 4.7589 -5.0537 -5.6580 40 1 4.2218 -6.0821 -4.3084 41 1 3.5756 -1.8552 -4.1656 42 1 4.3815 -2.5851 -5.5746 43 1 2.6441 -2.8604 -5.3015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358423394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:59 Heat of formation + Delta-G solvation = -63.014878 kcal Electronic energy + Delta-G solvation = -24016.586009 eV Core-core repulsion = 20640.697518 eV Total energy + Delta-G solvation = -3375.888491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30802 -39.98833 -38.97453 -36.80014 -34.81284 -33.78927 -32.39510 -31.88078 -28.67429 -28.37868 -28.30640 -27.10227 -26.37543 -24.14552 -22.66054 -20.93723 -20.72061 -19.08743 -18.24366 -17.59517 -17.34197 -16.69060 -16.53319 -16.28634 -15.96242 -15.57805 -15.21472 -15.08559 -15.06032 -14.39228 -14.31784 -13.86641 -13.77980 -13.65000 -13.36080 -13.05198 -12.94944 -12.88043 -12.79058 -12.68437 -12.66222 -12.38255 -12.36612 -12.18452 -12.15496 -11.91676 -11.47405 -11.12341 -10.72268 -10.44207 -9.94760 -9.70711 -9.57707 -8.32021 -5.98583 0.16500 0.44380 1.34188 1.37377 1.50378 1.96919 2.21325 2.54298 2.78898 3.00496 3.11829 3.77141 3.87550 3.90925 3.97925 4.05937 4.09635 4.21722 4.29818 4.43512 4.55259 4.57447 4.60375 4.61189 4.68960 4.77324 4.86988 4.89724 4.92656 4.95482 5.07624 5.09184 5.16587 5.29090 5.36547 5.37229 5.41553 5.48557 5.55878 5.59976 5.96450 6.06517 6.24450 6.40305 7.07242 7.37251 7.93064 8.59659 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.005411 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.311924 B = 5173.814249 C = 6650.504166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.445 5.445 3 C -0.344 4.344 4 H 0.078 0.922 5 C -0.002 4.002 6 N -0.891 5.891 7 Si 0.996 3.004 8 H -0.267 1.267 9 H -0.266 1.266 10 H -0.275 1.275 11 C 0.462 3.538 12 O -0.634 6.634 13 C -0.118 4.118 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.102 4.102 17 C -0.104 4.104 18 C -0.073 4.073 19 C 0.116 3.884 20 O -0.378 6.378 21 C 0.096 3.904 22 C -0.178 4.178 23 C -0.128 4.128 24 C -0.178 4.178 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.275 0.725 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -13.800 -7.587 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.161 5.161 3 C -0.472 4.472 4 H 0.096 0.904 5 C -0.203 4.203 6 N -0.530 5.530 7 Si 0.818 3.182 8 H -0.193 1.193 9 H -0.191 1.191 10 H -0.200 1.200 11 C 0.252 3.748 12 O -0.524 6.524 13 C -0.121 4.121 14 C -0.123 4.123 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.074 4.074 19 C 0.039 3.961 20 O -0.298 6.298 21 C 0.058 3.942 22 C -0.235 4.235 23 C -0.185 4.185 24 C -0.236 4.236 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.068 -13.755 -7.507 15.707 hybrid contribution 0.698 1.757 0.215 1.903 sum -0.371 -11.998 -7.292 14.045 Atomic orbital electron populations 1.21862 0.78792 0.98791 1.02958 1.43865 1.07210 1.04640 1.60410 1.19762 0.93452 0.83853 1.50152 0.90445 1.26137 0.96779 1.02397 0.95028 1.70178 1.09065 1.28758 1.44956 0.84904 0.77984 0.76515 0.78764 1.19267 1.19091 1.19986 1.18605 0.87183 0.84321 0.84664 1.90533 1.15422 1.87662 1.58798 1.19748 0.98866 0.94655 0.98830 1.21361 0.94416 0.98634 0.97873 1.21448 1.00079 0.92305 0.99495 1.21682 0.96393 1.00385 0.93520 1.21112 0.95694 0.95299 1.00082 1.19769 0.97384 0.95277 0.95002 1.20860 0.96726 0.88985 0.89493 1.87811 1.57805 1.40869 1.43286 1.21803 0.87058 0.97192 0.88168 1.22430 0.97747 1.01729 1.01637 1.21735 1.03473 0.95034 0.98216 1.22438 1.03339 0.97217 1.00561 0.91786 0.91146 0.94089 0.91453 0.86001 0.82058 0.81698 0.83570 0.92790 0.94214 0.91621 0.89286 0.94679 0.91490 0.88955 0.91533 0.94742 0.89262 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.70 7.97 127.77 1.02 6.71 16 2 N -0.45 -24.58 3.02 -662.31 -2.00 -26.58 16 3 C -0.34 -20.27 9.53 84.10 0.80 -19.47 16 4 H 0.08 4.86 7.21 -2.91 -0.02 4.84 16 5 C 0.00 -0.08 5.38 84.96 0.46 0.37 16 6 N -0.89 -47.01 9.66 21.68 0.21 -46.80 16 7 Si 1.00 42.90 29.56 68.60 2.03 44.92 16 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 C 0.46 24.86 6.53 86.75 0.57 25.42 16 12 O -0.63 -38.45 15.33 -3.98 -0.06 -38.51 16 13 C -0.12 -5.10 4.84 -20.09 -0.10 -5.19 16 14 C -0.10 -3.70 7.41 22.54 0.17 -3.53 16 15 C -0.12 -3.02 10.03 22.23 0.22 -2.80 16 16 C -0.10 -2.46 10.04 22.34 0.22 -2.24 16 17 C -0.10 -3.13 9.37 22.23 0.21 -2.92 16 18 C -0.07 -2.84 5.91 -19.59 -0.12 -2.95 16 19 C 0.12 4.55 4.38 71.24 0.31 4.86 16 20 O -0.38 -12.13 8.47 -148.98 -1.26 -13.39 16 21 C 0.10 2.51 1.14 -10.80 -0.01 2.49 16 22 C -0.18 -4.67 8.25 71.98 0.59 -4.07 16 23 C -0.13 -2.35 8.84 71.98 0.64 -1.71 16 24 C -0.18 -4.60 8.25 71.98 0.59 -4.01 16 25 H 0.06 2.66 4.62 -2.39 -0.01 2.65 16 26 H 0.07 3.50 6.74 -2.39 -0.02 3.49 16 27 H 0.04 2.05 7.44 -2.39 -0.02 2.03 16 28 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.12 4.38 7.39 -2.91 -0.02 4.36 16 30 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.15 3.91 7.00 -2.91 -0.02 3.89 16 33 H 0.05 2.41 5.51 -2.39 -0.01 2.40 16 34 H 0.04 1.71 6.41 -2.39 -0.02 1.70 16 35 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.03 1.13 6.54 -2.39 -0.02 1.12 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.03 1.09 6.54 -2.38 -0.02 1.07 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -70.55 342.07 5.49 -65.06 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 1.00 Total: 24.33 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.58 Total: -9.03 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.79 Total: -73.38 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.32 Total: -51.90 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -70.55 5.49 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358423394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.041 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds