Wall clock time and date at job start Tue Mar 31 2020 07:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46588 * 2 1 4 4 C 1.52997 * 109.47150 * 119.99822 * 2 1 3 5 5 O 1.42895 * 109.47180 * 175.91572 * 4 2 1 6 6 C 1.52995 * 109.47118 * 240.00207 * 2 1 3 7 7 H 1.09002 * 109.47294 * 177.97583 * 6 2 1 8 8 C 1.52996 * 109.47514 * 57.97341 * 6 2 1 9 9 N 1.46502 * 109.47170 * 67.21424 * 8 6 2 10 10 C 1.34768 * 120.00391 * 187.32035 * 9 8 6 11 11 O 1.21693 * 120.00176 * 0.02562 * 10 9 8 12 12 C 1.46375 * 120.00315 * 180.02562 * 10 9 8 13 13 H 1.08000 * 120.00006 * 0.02562 * 12 10 9 14 14 C 1.40043 * 120.00351 * 180.02562 * 12 10 9 15 15 N 1.30677 * 119.99784 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00551 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46881 * 59.99627 * 16 14 12 18 18 H 1.48501 * 109.47744 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47070 * 300.00279 * 16 14 12 20 20 C 1.50703 * 109.46740 * 297.97329 * 6 2 1 21 21 C 1.38235 * 119.99943 * 78.25620 * 20 6 2 22 22 C 1.38234 * 119.99995 * 179.78978 * 21 20 6 23 23 C 1.38235 * 119.99919 * 0.42829 * 22 21 20 24 24 C 1.38234 * 120.00158 * 359.82500 * 23 22 21 25 25 C 1.38231 * 120.00286 * 258.51931 * 20 6 2 26 26 H 1.09002 * 109.46794 * 305.53325 * 1 2 3 27 27 H 1.09001 * 109.47030 * 65.52833 * 1 2 3 28 28 H 1.09001 * 109.46707 * 185.53141 * 1 2 3 29 29 H 1.09004 * 109.46575 * 189.94958 * 3 2 1 30 30 H 1.08993 * 109.47260 * 309.94955 * 3 2 1 31 31 H 1.08999 * 109.47335 * 69.95639 * 3 2 1 32 32 H 1.08994 * 109.47021 * 55.91527 * 4 2 1 33 33 H 1.08999 * 109.47275 * 295.91635 * 4 2 1 34 34 H 0.96705 * 114.00263 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.47387 * 187.21507 * 8 6 2 36 36 H 1.08997 * 109.47290 * 307.21581 * 8 6 2 37 37 H 0.97006 * 119.99851 * 7.32266 * 9 8 6 38 38 H 0.97001 * 119.99904 * 179.97438 * 15 14 12 39 39 H 1.08007 * 120.00236 * 359.97438 * 21 20 6 40 40 H 1.07997 * 120.00326 * 180.27042 * 22 21 20 41 41 H 1.07998 * 119.99978 * 179.83286 * 23 22 21 42 42 H 1.07999 * 120.00365 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99629 * 359.97438 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 3.4658 -0.8049 1.2023 6 6 2.0401 -0.7212 -1.2492 7 1 3.1295 -0.6899 -1.2676 8 6 1.4889 -0.0300 -2.4979 9 7 2.0736 1.3083 -2.6136 10 6 1.6249 2.1605 -3.5563 11 8 0.7338 1.8187 -4.3112 12 6 2.2095 3.4975 -3.6722 13 1 3.0007 3.8008 -3.0025 14 6 1.7429 4.3833 -4.6514 15 7 0.7853 4.0165 -5.4613 16 14 2.4893 6.0892 -4.7998 17 1 3.9417 5.9708 -5.0859 18 1 1.8251 6.8259 -5.9049 19 1 2.2944 6.8273 -3.5261 20 6 1.5791 -2.1558 -1.2243 21 6 0.2793 -2.4703 -1.5742 22 6 -0.1423 -3.7866 -1.5555 23 6 0.7334 -4.7875 -1.1785 24 6 2.0318 -4.4725 -0.8236 25 6 2.4545 -3.1566 -0.8464 26 1 -0.3633 0.5973 0.8363 27 1 -0.3633 0.4257 -0.9354 28 1 -0.3633 -1.0229 0.0991 29 1 3.1154 1.4477 -0.1776 30 1 1.5389 2.0050 -0.7878 31 1 1.8290 1.9026 0.9654 32 1 1.6182 -1.7255 1.2866 33 1 1.7377 -0.1668 2.1377 34 1 3.8590 -1.2510 1.9649 35 1 1.7452 -0.6160 -3.3806 36 1 0.4050 0.0527 -2.4189 37 1 2.7837 1.5810 -2.0117 38 1 0.4618 4.6302 -6.1393 39 1 -0.4061 -1.6878 -1.8650 40 1 -1.1565 -4.0328 -1.8330 41 1 0.4033 -5.8157 -1.1613 42 1 2.7159 -5.2544 -0.5286 43 1 3.4690 -2.9104 -0.5694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358533360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:29 Heat of formation + Delta-G solvation = -89.091310 kcal Electronic energy + Delta-G solvation = -24213.806736 eV Core-core repulsion = 20836.787486 eV Total energy + Delta-G solvation = -3377.019250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43769 -39.38525 -38.51301 -36.65156 -34.74879 -33.98390 -32.73991 -31.80423 -29.57670 -28.21595 -27.85992 -26.96465 -24.56490 -23.24263 -22.19205 -21.59682 -19.95458 -18.93531 -18.15929 -17.63496 -17.24004 -16.96813 -16.39903 -16.02957 -15.72555 -15.68956 -15.41304 -14.83853 -14.57537 -14.37199 -14.14757 -13.98805 -13.59108 -13.45534 -13.30479 -13.13813 -12.95154 -12.86430 -12.70180 -12.56043 -12.44228 -12.31490 -12.04748 -11.83236 -11.52183 -11.43833 -11.22458 -10.90401 -10.72111 -9.85942 -9.72961 -9.50523 -9.30137 -8.27029 -6.83342 0.50393 0.56247 1.39915 1.43700 1.55034 2.25647 2.49479 2.91138 3.15374 3.44022 3.61447 3.68727 3.82941 3.97054 4.11290 4.22211 4.25197 4.32524 4.39855 4.49504 4.57083 4.67497 4.68057 4.71954 4.77728 4.81755 4.86808 5.03920 5.06647 5.09794 5.19440 5.23646 5.28767 5.32691 5.43608 5.52149 5.65189 5.68097 5.83632 5.90100 6.18029 6.25847 6.30627 6.88439 7.03835 7.57694 8.52055 8.69863 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.004338 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.326009 B = 6452.597723 C = 7145.596908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.149 4.149 4 C 0.098 3.902 5 O -0.578 6.578 6 C -0.030 4.030 7 H 0.083 0.917 8 C 0.142 3.858 9 N -0.749 5.749 10 C 0.537 3.463 11 O -0.635 6.635 12 C -0.573 4.573 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.996 3.004 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.074 4.074 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.115 4.115 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.392 0.608 35 H 0.017 0.983 36 H 0.045 0.955 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -13.817 16.419 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 C -0.207 4.207 4 C 0.021 3.979 5 O -0.386 6.386 6 C -0.048 4.048 7 H 0.101 0.899 8 C 0.017 3.983 9 N -0.407 5.407 10 C 0.341 3.659 11 O -0.522 6.522 12 C -0.610 4.610 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.816 3.184 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.075 4.075 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.630 -13.740 15.187 20.648 hybrid contribution 0.290 0.659 0.119 0.729 sum 2.920 -13.081 15.306 20.345 Atomic orbital electron populations 1.22019 0.94142 1.02481 1.01732 1.20454 0.95378 0.95178 0.93637 1.22165 1.01033 0.95424 1.02066 1.22077 0.81360 0.98670 0.95820 1.86461 1.19742 1.82583 1.49793 1.20191 1.00432 0.91129 0.93079 0.89871 1.21060 0.97351 0.83951 0.95896 1.46240 1.42147 1.14173 1.38101 1.18597 0.82164 0.86000 0.79113 1.90545 1.35532 1.79331 1.46828 1.21382 1.22326 0.98001 1.19298 0.89689 1.26951 0.93777 1.04581 0.93209 1.70195 1.23054 1.37200 1.14724 0.85097 0.79071 0.75319 0.78955 1.17933 1.19906 1.17750 1.19669 0.94146 0.94316 0.99367 1.21231 0.95979 0.97224 1.00584 1.21365 1.00805 0.92452 1.00045 1.21439 0.93847 0.99995 0.99241 1.21430 0.96581 0.96286 0.99743 1.21215 0.99710 0.92614 0.99728 0.91464 0.93994 0.91090 0.92386 0.92686 0.91959 0.93188 0.92713 0.75852 0.96502 0.93649 0.76611 0.91664 0.87357 0.84874 0.83812 0.83695 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 6.98 71.98 0.50 -3.56 16 2 C -0.05 -1.27 0.41 -52.18 -0.02 -1.29 16 3 C -0.15 -4.55 6.64 71.98 0.48 -4.07 16 4 C 0.10 2.03 5.35 71.98 0.38 2.42 16 5 O -0.58 -11.26 12.54 -148.98 -1.87 -13.12 16 6 C -0.03 -0.92 1.47 -11.54 -0.02 -0.93 16 7 H 0.08 2.66 7.49 -2.39 -0.02 2.64 16 8 C 0.14 5.94 4.20 86.38 0.36 6.30 16 9 N -0.75 -35.34 3.52 -467.42 -1.65 -36.99 16 10 C 0.54 32.22 7.75 86.36 0.67 32.89 16 11 O -0.63 -43.95 14.99 -4.33 -0.06 -44.02 16 12 C -0.57 -33.37 9.54 24.83 0.24 -33.13 16 13 H 0.08 4.45 7.85 -2.91 -0.02 4.42 16 14 C 0.03 1.70 5.50 85.30 0.47 2.17 16 15 N -0.82 -51.50 11.83 21.83 0.26 -51.24 16 16 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 20 C -0.07 -2.04 3.62 -19.87 -0.07 -2.11 16 21 C -0.13 -3.66 7.05 22.27 0.16 -3.50 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 23 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 24 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.11 -2.63 8.94 22.27 0.20 -2.43 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.43 5.87 -2.39 -0.01 1.42 16 28 H 0.07 1.77 5.94 -2.39 -0.01 1.75 16 29 H 0.06 1.75 7.26 -2.38 -0.02 1.74 16 30 H 0.05 2.08 5.84 -2.39 -0.01 2.07 16 31 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 32 H 0.05 0.99 6.94 -2.39 -0.02 0.97 16 33 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 34 H 0.39 3.92 9.12 -74.05 -0.68 3.25 16 35 H 0.02 0.77 8.13 -2.39 -0.02 0.76 16 36 H 0.05 2.04 4.73 -2.39 -0.01 2.03 16 37 H 0.40 16.63 5.65 -92.70 -0.52 16.11 16 38 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 39 H 0.11 3.32 5.75 -2.91 -0.02 3.31 16 40 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.13 2.74 8.03 -2.91 -0.02 2.72 16 Total: -1.00 -78.95 336.78 2.56 -76.38 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.16 Total: 39.39 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.02 Total: -14.26 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -1.39 Total: -88.23 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.93 Total: -57.14 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -78.95 2.56 -76.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358533360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.708 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds