Wall clock time and date at job start Tue Mar 31 2020 07:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.52998 * 109.47262 * 119.99732 * 2 1 3 5 5 O 1.42898 * 109.47113 * 56.21664 * 4 2 1 6 6 C 1.52998 * 109.47242 * 239.99955 * 2 1 3 7 7 H 1.09000 * 109.47019 * 305.46601 * 6 2 1 8 8 C 1.52996 * 109.47227 * 65.47052 * 6 2 1 9 9 N 1.46503 * 109.46936 * 291.39877 * 8 6 2 10 10 C 1.34775 * 119.99795 * 173.47420 * 9 8 6 11 11 O 1.21684 * 120.00229 * 359.97438 * 10 9 8 12 12 C 1.46380 * 119.99914 * 180.02562 * 10 9 8 13 13 H 1.08004 * 119.99763 * 5.92428 * 12 10 9 14 14 C 1.40045 * 119.99932 * 185.92860 * 12 10 9 15 15 N 1.30676 * 120.00283 * 5.96226 * 14 12 10 16 16 Si 1.86804 * 120.00046 * 185.96014 * 14 12 10 17 17 H 1.48506 * 109.46883 * 94.99167 * 16 14 12 18 18 H 1.48491 * 109.47417 * 214.99504 * 16 14 12 19 19 H 1.48503 * 109.46789 * 334.99792 * 16 14 12 20 20 C 1.50710 * 109.47039 * 185.47041 * 6 2 1 21 21 C 1.38235 * 119.99691 * 285.44143 * 20 6 2 22 22 C 1.38236 * 119.99601 * 179.81201 * 21 20 6 23 23 C 1.38230 * 120.00029 * 0.39487 * 22 21 20 24 24 C 1.38235 * 119.99953 * 359.85716 * 23 22 21 25 25 C 1.38227 * 120.00034 * 105.71564 * 20 6 2 26 26 H 1.08995 * 109.47436 * 289.42430 * 1 2 3 27 27 H 1.08999 * 109.47173 * 49.42827 * 1 2 3 28 28 H 1.09008 * 109.46860 * 169.42781 * 1 2 3 29 29 H 1.09007 * 109.47237 * 175.95756 * 3 2 1 30 30 H 1.08996 * 109.47098 * 295.95284 * 3 2 1 31 31 H 1.09003 * 109.47544 * 55.95802 * 3 2 1 32 32 H 1.09003 * 109.47253 * 176.21913 * 4 2 1 33 33 H 1.08999 * 109.47142 * 296.21984 * 4 2 1 34 34 H 0.96703 * 113.99944 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47568 * 51.39580 * 8 6 2 36 36 H 1.08997 * 109.47363 * 171.39753 * 8 6 2 37 37 H 0.96998 * 120.00073 * 353.46718 * 9 8 6 38 38 H 0.97001 * 120.00013 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99976 * 359.97438 * 21 20 6 40 40 H 1.08001 * 119.99901 * 180.22684 * 22 21 20 41 41 H 1.08001 * 119.99889 * 179.83087 * 23 22 21 42 42 H 1.08005 * 119.99796 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00308 * 359.97362 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4925 -2.0403 1.2946 6 6 2.0400 -0.7212 -1.2492 7 1 1.5989 -1.7168 -1.2995 8 6 1.6454 0.0750 -2.4947 9 7 0.1923 0.0164 -2.6716 10 6 -0.4001 0.7552 -3.6306 11 8 0.2719 1.4712 -4.3492 12 6 -1.8521 0.6971 -3.8070 13 1 -2.4588 0.1383 -3.1098 14 6 -2.4544 1.3661 -4.8798 15 7 -1.7138 1.9441 -5.7882 16 14 -4.3165 1.4322 -5.0124 17 1 -4.8113 2.6951 -4.4079 18 1 -4.7132 1.3792 -6.4424 19 1 -4.9054 0.2747 -4.2921 20 6 3.5410 -0.8396 -1.1833 21 6 4.3325 0.2698 -1.4147 22 6 5.7092 0.1621 -1.3504 23 6 6.2944 -1.0567 -1.0628 24 6 5.5029 -2.1673 -0.8365 25 6 4.1262 -2.0587 -0.8971 26 1 -0.3634 0.3417 0.9691 27 1 -0.3633 0.6684 -0.7806 28 1 -0.3633 -1.0103 -0.1886 29 1 3.1276 1.4434 0.0724 30 1 1.7370 1.9349 -0.9240 31 1 1.6186 1.9769 0.8515 32 1 3.1279 -0.7802 1.2160 33 1 1.7330 -0.1697 2.1379 34 1 1.7735 -2.5566 2.0625 35 1 1.9553 1.1132 -2.3755 36 1 2.1354 -0.3524 -3.3695 37 1 -0.3435 -0.5541 -2.0985 38 1 -2.1311 2.4071 -6.5314 39 1 3.8753 1.2212 -1.6431 40 1 6.3276 1.0296 -1.5276 41 1 7.3701 -1.1415 -1.0153 42 1 5.9602 -3.1197 -0.6122 43 1 3.5079 -2.9264 -0.7202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358533362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:32 Heat of formation + Delta-G solvation = -66.345250 kcal Electronic energy + Delta-G solvation = -24177.814434 eV Core-core repulsion = 20801.781528 eV Total energy + Delta-G solvation = -3376.032907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28811 -37.98273 -36.96859 -35.45496 -32.76170 -32.03915 -31.58248 -30.88324 -27.96712 -27.05648 -26.16722 -25.78283 -23.13109 -22.25841 -21.14430 -19.56607 -18.62728 -17.32431 -17.18436 -16.36116 -15.76194 -15.32977 -15.16610 -14.84188 -14.56515 -14.05857 -13.94283 -13.66987 -13.25185 -13.02463 -12.84095 -12.46139 -12.43217 -12.16598 -12.06734 -11.74113 -11.55128 -11.35783 -11.17256 -11.05451 -10.88469 -10.76869 -10.44110 -10.35768 -10.31806 -10.13471 -10.01841 -9.79511 -8.80716 -8.80036 -8.54211 -7.54759 -7.32991 -6.16083 -4.57816 1.44855 1.48635 3.16846 3.24080 3.27543 3.85979 4.14736 4.29165 4.64010 4.70814 4.81317 4.97284 5.03367 5.05748 5.17212 5.25112 5.39131 5.53398 5.58681 5.60464 5.64034 5.69855 5.78237 5.83584 5.92281 5.97522 6.07698 6.16598 6.24055 6.27967 6.37858 6.42105 6.54322 6.56666 6.62349 6.71967 6.78800 6.89912 7.09815 7.48249 7.64531 8.00344 8.17449 8.39616 9.07806 9.60927 10.65307 10.84371 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.004332 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.735308 B = 6461.971422 C = 7171.245236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.156 4.156 4 C 0.086 3.914 5 O -0.565 6.565 6 C -0.049 4.049 7 H 0.086 0.914 8 C 0.137 3.863 9 N -0.766 5.766 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.090 3.910 15 N -0.770 5.770 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.059 4.059 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.113 4.113 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.371 0.629 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.384 0.616 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.058 -6.382 14.757 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.045 4.045 3 C -0.213 4.213 4 C 0.008 3.992 5 O -0.369 6.369 6 C -0.067 4.067 7 H 0.105 0.895 8 C 0.012 3.988 9 N -0.424 5.424 10 C 0.359 3.641 11 O -0.467 6.467 12 C -0.584 4.584 13 H 0.085 0.915 14 C -0.130 4.130 15 N -0.399 5.399 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.219 0.781 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.286 -5.539 13.477 18.431 hybrid contribution -0.760 -0.469 0.748 1.165 sum 10.526 -6.009 14.225 18.688 Atomic orbital electron populations 1.22161 0.93339 1.02976 1.02303 1.20444 0.96861 0.94525 0.92715 1.22171 1.01071 0.94997 1.03083 1.22320 0.96508 0.83172 0.97187 1.86516 1.74091 1.26535 1.49752 1.20462 0.90604 1.00686 0.94985 0.89533 1.21038 0.84694 0.98939 0.94167 1.46496 1.05066 1.50736 1.40119 1.18203 0.88738 0.78910 0.78241 1.90586 1.66041 1.43194 1.46885 1.20895 0.90708 1.34252 1.12578 0.91473 1.25676 0.99344 0.93435 0.94522 1.70005 1.36086 1.25368 1.08440 0.86402 0.83519 0.79195 0.77880 1.19839 1.20540 1.18907 1.19797 0.95226 0.93280 0.97691 1.21280 0.93495 0.99025 0.99467 1.21135 0.94927 0.97611 1.00330 1.21074 0.99432 0.93201 1.01177 1.21081 0.93846 0.98351 1.01038 1.21092 0.94612 0.97294 1.00063 0.93603 0.89528 0.92158 0.92100 0.90463 0.92822 0.93686 0.94298 0.78341 0.92193 0.93883 0.78098 0.92184 0.85402 0.86341 0.86642 0.86555 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 6.57 37.16 0.24 -2.03 16 2 C -0.05 -0.62 0.41 -154.51 -0.06 -0.69 16 3 C -0.16 -2.11 6.99 37.16 0.26 -1.85 16 4 C 0.09 0.99 5.57 37.16 0.21 1.20 16 5 O -0.56 -6.32 12.63 -35.23 -0.44 -6.77 16 6 C -0.05 -0.74 1.53 -91.77 -0.14 -0.88 16 7 H 0.09 1.37 7.70 -51.93 -0.40 0.97 16 8 C 0.14 2.67 4.23 -4.04 -0.02 2.65 16 9 N -0.77 -17.14 3.71 -61.72 -0.23 -17.37 16 10 C 0.56 15.83 7.72 -12.99 -0.10 15.73 16 11 O -0.58 -19.00 15.07 5.20 0.08 -18.92 16 12 C -0.55 -15.54 9.54 -35.63 -0.34 -15.88 16 13 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 14 C 0.09 2.53 5.49 -17.37 -0.10 2.43 16 15 N -0.77 -23.31 11.89 55.55 0.66 -22.65 16 16 Si 0.91 20.35 29.56 -169.99 -5.03 15.33 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.06 -0.82 3.39 -104.62 -0.35 -1.17 16 21 C -0.11 -1.54 7.18 -39.58 -0.28 -1.83 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 24 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 25 C -0.11 -1.40 9.08 -39.59 -0.36 -1.76 16 26 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 27 H 0.09 1.54 5.89 -51.93 -0.31 1.24 16 28 H 0.06 0.92 7.31 -51.92 -0.38 0.54 16 29 H 0.06 0.75 5.52 -51.92 -0.29 0.46 16 30 H 0.08 1.23 5.92 -51.93 -0.31 0.92 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.51 6.55 -51.93 -0.34 0.17 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 2.52 9.12 45.56 0.42 2.93 16 35 H 0.06 1.22 4.78 -51.93 -0.25 0.97 16 36 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.38 7.78 5.80 -40.82 -0.24 7.54 16 38 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 39 H 0.13 1.76 5.56 -52.49 -0.29 1.47 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.42 8.00 -52.49 -0.42 1.00 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -34.71 336.99 -7.42 -42.13 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.30 Total: 12.69 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.24 Total: -9.52 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.43 Total: -40.02 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.37 Total: -25.69 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.71 -7.42 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358533362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.213 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds