Wall clock time and date at job start Tue Mar 31 2020 07:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46872 * 2 1 4 4 C 1.52998 * 109.47262 * 119.99732 * 2 1 3 5 5 O 1.42898 * 109.47113 * 56.21664 * 4 2 1 6 6 C 1.52998 * 109.47242 * 239.99955 * 2 1 3 7 7 H 1.09000 * 109.47019 * 305.46601 * 6 2 1 8 8 C 1.52996 * 109.47227 * 65.47052 * 6 2 1 9 9 N 1.46503 * 109.46936 * 291.39877 * 8 6 2 10 10 C 1.34775 * 119.99795 * 173.47420 * 9 8 6 11 11 O 1.21684 * 120.00229 * 359.97438 * 10 9 8 12 12 C 1.46380 * 119.99914 * 180.02562 * 10 9 8 13 13 H 1.08004 * 119.99763 * 5.92428 * 12 10 9 14 14 C 1.40045 * 119.99932 * 185.92860 * 12 10 9 15 15 N 1.30676 * 120.00283 * 5.96226 * 14 12 10 16 16 Si 1.86804 * 120.00046 * 185.96014 * 14 12 10 17 17 H 1.48506 * 109.46883 * 94.99167 * 16 14 12 18 18 H 1.48491 * 109.47417 * 214.99504 * 16 14 12 19 19 H 1.48503 * 109.46789 * 334.99792 * 16 14 12 20 20 C 1.50710 * 109.47039 * 185.47041 * 6 2 1 21 21 C 1.38235 * 119.99691 * 285.44143 * 20 6 2 22 22 C 1.38236 * 119.99601 * 179.81201 * 21 20 6 23 23 C 1.38230 * 120.00029 * 0.39487 * 22 21 20 24 24 C 1.38235 * 119.99953 * 359.85716 * 23 22 21 25 25 C 1.38227 * 120.00034 * 105.71564 * 20 6 2 26 26 H 1.08995 * 109.47436 * 289.42430 * 1 2 3 27 27 H 1.08999 * 109.47173 * 49.42827 * 1 2 3 28 28 H 1.09008 * 109.46860 * 169.42781 * 1 2 3 29 29 H 1.09007 * 109.47237 * 175.95756 * 3 2 1 30 30 H 1.08996 * 109.47098 * 295.95284 * 3 2 1 31 31 H 1.09003 * 109.47544 * 55.95802 * 3 2 1 32 32 H 1.09003 * 109.47253 * 176.21913 * 4 2 1 33 33 H 1.08999 * 109.47142 * 296.21984 * 4 2 1 34 34 H 0.96703 * 113.99944 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47568 * 51.39580 * 8 6 2 36 36 H 1.08997 * 109.47363 * 171.39753 * 8 6 2 37 37 H 0.96998 * 120.00073 * 353.46718 * 9 8 6 38 38 H 0.97001 * 120.00013 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99976 * 359.97438 * 21 20 6 40 40 H 1.08001 * 119.99901 * 180.22684 * 22 21 20 41 41 H 1.08001 * 119.99889 * 179.83087 * 23 22 21 42 42 H 1.08005 * 119.99796 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00308 * 359.97362 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4925 -2.0403 1.2946 6 6 2.0400 -0.7212 -1.2492 7 1 1.5989 -1.7168 -1.2995 8 6 1.6454 0.0750 -2.4947 9 7 0.1923 0.0164 -2.6716 10 6 -0.4001 0.7552 -3.6306 11 8 0.2719 1.4712 -4.3492 12 6 -1.8521 0.6971 -3.8070 13 1 -2.4588 0.1383 -3.1098 14 6 -2.4544 1.3661 -4.8798 15 7 -1.7138 1.9441 -5.7882 16 14 -4.3165 1.4322 -5.0124 17 1 -4.8113 2.6951 -4.4079 18 1 -4.7132 1.3792 -6.4424 19 1 -4.9054 0.2747 -4.2921 20 6 3.5410 -0.8396 -1.1833 21 6 4.3325 0.2698 -1.4147 22 6 5.7092 0.1621 -1.3504 23 6 6.2944 -1.0567 -1.0628 24 6 5.5029 -2.1673 -0.8365 25 6 4.1262 -2.0587 -0.8971 26 1 -0.3634 0.3417 0.9691 27 1 -0.3633 0.6684 -0.7806 28 1 -0.3633 -1.0103 -0.1886 29 1 3.1276 1.4434 0.0724 30 1 1.7370 1.9349 -0.9240 31 1 1.6186 1.9769 0.8515 32 1 3.1279 -0.7802 1.2160 33 1 1.7330 -0.1697 2.1379 34 1 1.7735 -2.5566 2.0625 35 1 1.9553 1.1132 -2.3755 36 1 2.1354 -0.3524 -3.3695 37 1 -0.3435 -0.5541 -2.0985 38 1 -2.1311 2.4071 -6.5314 39 1 3.8753 1.2212 -1.6431 40 1 6.3276 1.0296 -1.5276 41 1 7.3701 -1.1415 -1.0153 42 1 5.9602 -3.1197 -0.6122 43 1 3.5079 -2.9264 -0.7202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358533362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:32 Heat of formation + Delta-G solvation = -90.902376 kcal Electronic energy + Delta-G solvation = -24178.879311 eV Core-core repulsion = 20801.781528 eV Total energy + Delta-G solvation = -3377.097783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44430 -39.38249 -38.52554 -36.66491 -34.75688 -33.99696 -32.71224 -31.81973 -29.58896 -28.24463 -27.86307 -27.00562 -24.51826 -23.26516 -22.20426 -21.61396 -19.95102 -18.96271 -18.16596 -17.63947 -17.22473 -16.99144 -16.45515 -16.04227 -15.73284 -15.68783 -15.43025 -14.87041 -14.52100 -14.39353 -14.15888 -13.98953 -13.58548 -13.47792 -13.31052 -13.15520 -12.94858 -12.89418 -12.69446 -12.57445 -12.43898 -12.35506 -12.00292 -11.82125 -11.54746 -11.43336 -11.20807 -10.92447 -10.72762 -9.86261 -9.73942 -9.51088 -9.33340 -8.30179 -6.82981 0.49329 0.55193 1.39786 1.41227 1.56960 2.25286 2.48615 2.90084 3.14624 3.43499 3.60019 3.67739 3.83264 3.94784 4.10103 4.21349 4.25969 4.33046 4.38412 4.48666 4.56580 4.66035 4.67792 4.70584 4.75662 4.81253 4.86746 5.04569 5.08049 5.08242 5.18392 5.22467 5.27921 5.32876 5.43151 5.51238 5.64264 5.67275 5.81815 5.89832 6.16939 6.25195 6.30420 6.88244 7.02538 7.56849 8.51176 8.68705 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.004332 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.735308 B = 6461.971422 C = 7171.245236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.151 4.151 4 C 0.097 3.903 5 O -0.579 6.579 6 C -0.031 4.031 7 H 0.081 0.919 8 C 0.142 3.858 9 N -0.749 5.749 10 C 0.539 3.461 11 O -0.636 6.636 12 C -0.574 4.574 13 H 0.085 0.915 14 C 0.031 3.969 15 N -0.824 5.824 16 Si 0.996 3.004 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.248 1.248 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -7.899 16.908 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 C -0.207 4.207 4 C 0.019 3.981 5 O -0.386 6.386 6 C -0.050 4.050 7 H 0.099 0.901 8 C 0.018 3.982 9 N -0.406 5.406 10 C 0.343 3.657 11 O -0.523 6.523 12 C -0.611 4.611 13 H 0.103 0.897 14 C -0.184 4.184 15 N -0.453 5.453 16 Si 0.816 3.184 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.171 1.171 20 C -0.075 4.075 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.434 -7.109 15.693 20.677 hybrid contribution -0.687 -0.036 0.101 0.696 sum 10.746 -7.145 15.794 20.396 Atomic orbital electron populations 1.22061 0.94456 1.01871 1.01939 1.20445 0.95867 0.94834 0.93473 1.22084 1.01975 0.94838 1.01846 1.22108 0.96595 0.83439 0.95922 1.86464 1.74341 1.26473 1.51367 1.20237 0.92210 0.99305 0.93241 0.90110 1.21075 0.82503 0.99051 0.95621 1.46173 1.06490 1.49368 1.38574 1.18594 0.89395 0.78978 0.78704 1.90535 1.67124 1.45521 1.49167 1.21410 0.91100 1.35072 1.13518 0.89670 1.26940 1.05865 0.92140 0.93455 1.70170 1.39298 1.26408 1.09447 0.85031 0.75094 0.79932 0.78366 1.18876 1.19667 1.17118 1.19661 0.93940 0.94299 0.99606 1.21265 0.94595 0.98487 1.00736 1.21381 0.94239 0.98995 0.99907 1.21446 1.00999 0.92481 0.99588 1.21421 0.93164 0.99668 0.99730 1.21206 0.95619 0.96669 1.00061 0.91960 0.92875 0.92403 0.90842 0.93855 0.91374 0.93125 0.92745 0.75892 0.93397 0.96552 0.76722 0.91592 0.86934 0.84702 0.83770 0.83748 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 6.57 71.98 0.47 -3.92 16 2 C -0.05 -1.25 0.41 -52.18 -0.02 -1.27 16 3 C -0.15 -4.12 6.99 71.98 0.50 -3.62 16 4 C 0.10 2.03 5.57 71.98 0.40 2.43 16 5 O -0.58 -11.54 12.63 -148.98 -1.88 -13.42 16 6 C -0.03 -0.96 1.53 -11.54 -0.02 -0.98 16 7 H 0.08 2.58 7.70 -2.39 -0.02 2.56 16 8 C 0.14 5.92 4.23 86.38 0.37 6.28 16 9 N -0.75 -35.34 3.71 -467.41 -1.74 -37.07 16 10 C 0.54 32.33 7.72 86.36 0.67 33.00 16 11 O -0.64 -43.95 15.07 -4.30 -0.06 -44.02 16 12 C -0.57 -33.45 9.54 24.83 0.24 -33.21 16 13 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 14 C 0.03 1.76 5.49 85.30 0.47 2.23 16 15 N -0.82 -51.56 11.89 21.83 0.26 -51.30 16 16 Si 1.00 41.91 29.56 68.60 2.03 43.94 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 20 C -0.07 -2.03 3.39 -19.86 -0.07 -2.10 16 21 C -0.13 -3.59 7.18 22.27 0.16 -3.43 16 22 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 23 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 24 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 25 C -0.12 -2.72 9.08 22.27 0.20 -2.51 16 26 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 27 H 0.05 1.95 5.89 -2.39 -0.01 1.94 16 28 H 0.06 1.74 7.31 -2.38 -0.02 1.72 16 29 H 0.07 1.81 5.52 -2.38 -0.01 1.79 16 30 H 0.04 1.47 5.92 -2.39 -0.01 1.46 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.02 6.55 -2.39 -0.02 1.01 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.39 4.11 9.12 -74.06 -0.68 3.44 16 35 H 0.05 2.13 4.78 -2.39 -0.01 2.11 16 36 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 37 H 0.40 16.64 5.80 -92.71 -0.54 16.10 16 38 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 39 H 0.11 3.31 5.56 -2.91 -0.02 3.29 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.13 2.74 8.00 -2.91 -0.02 2.71 16 Total: -1.00 -79.00 336.99 2.47 -76.53 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.18 Total: 39.32 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.04 Total: -13.98 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -1.48 Total: -88.37 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -1.95 Total: -57.43 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -79.00 2.47 -76.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358533362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.374 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds