Wall clock time and date at job start Tue Mar 31 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.53000 * 109.47005 * 120.00126 * 2 1 3 5 5 O 1.42903 * 109.47316 * 65.00009 * 4 2 1 6 6 C 1.35895 * 117.00211 * 179.97438 * 5 4 2 7 7 C 1.38726 * 120.05880 * 179.97438 * 6 5 4 8 8 C 1.38140 * 119.95017 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05231 * 0.02562 * 8 7 6 10 10 C 1.50693 * 119.94619 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47285 * 89.99741 * 10 9 8 12 12 O 1.21296 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00328 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99633 * 0.02562 * 13 11 10 15 15 C 1.37089 * 120.00130 * 180.02562 * 13 11 10 16 16 H 1.08009 * 119.99796 * 21.71065 * 15 13 11 17 17 C 1.38949 * 120.00162 * 201.70753 * 15 13 11 18 18 N 1.31408 * 119.99924 * 11.34494 * 17 15 13 19 19 Si 1.86803 * 120.00129 * 191.34232 * 17 15 13 20 20 H 1.48502 * 109.46871 * 85.07330 * 19 17 15 21 21 H 1.48496 * 109.47343 * 205.07421 * 19 17 15 22 22 H 1.48501 * 109.47369 * 325.07643 * 19 17 15 23 23 C 1.38264 * 120.11191 * 0.25492 * 9 8 7 24 24 C 1.38147 * 120.05560 * 359.45011 * 23 9 8 25 25 H 1.09005 * 109.46790 * 60.00289 * 1 2 3 26 26 H 1.09006 * 109.47133 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47357 * 300.00119 * 1 2 3 28 28 H 1.08999 * 109.47357 * 239.99881 * 2 1 3 29 29 H 1.09002 * 109.47491 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47432 * 300.00209 * 3 2 1 31 31 H 1.08999 * 109.47074 * 59.99708 * 3 2 1 32 32 H 1.08999 * 109.46807 * 304.99758 * 4 2 1 33 33 H 1.08995 * 109.47182 * 185.00239 * 4 2 1 34 34 H 1.08005 * 120.02828 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.97703 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47218 * 330.00276 * 10 9 8 37 37 H 1.09005 * 109.47479 * 210.00150 * 10 9 8 38 38 H 1.09002 * 109.46924 * 92.17631 * 14 13 11 39 39 H 1.09002 * 109.46529 * 212.17008 * 14 13 11 40 40 H 1.08997 * 109.47456 * 332.16939 * 14 13 11 41 41 H 0.96997 * 120.00087 * 179.97438 * 18 17 15 42 42 H 1.08002 * 119.97381 * 179.70578 * 23 9 8 43 43 H 1.08002 * 120.03071 * 180.25315 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0405 -2.8857 2.2328 7 6 1.7066 -4.2322 2.2427 8 6 2.0922 -5.0306 3.3020 9 6 2.8098 -4.4885 4.3523 10 6 3.2286 -5.3615 5.5070 11 6 4.5823 -5.9585 5.2203 12 8 5.1512 -5.7001 4.1806 13 7 5.1613 -6.7788 6.1194 14 6 4.4743 -7.0905 7.3753 15 6 6.3929 -7.3215 5.8588 16 1 7.0495 -6.8510 5.1418 17 6 6.7966 -8.4767 6.5170 18 7 5.9277 -9.1728 7.2150 19 14 8.5743 -9.0402 6.4096 20 1 9.3783 -8.3419 7.4446 21 1 8.6434 -10.5063 6.6348 22 1 9.1147 -8.7201 5.0639 23 6 3.1388 -3.1456 4.3477 24 6 2.7608 -2.3443 3.2877 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -0.2617 2.1369 33 1 3.1262 -0.6444 1.2952 34 1 1.1458 -4.6560 1.4227 35 1 1.8329 -6.0789 3.3100 36 1 2.5000 -6.1611 5.6410 37 1 3.2811 -4.7617 6.4157 38 1 3.8835 -7.9980 7.2507 39 1 5.2110 -7.2420 8.1644 40 1 3.8176 -6.2635 7.6452 41 1 6.2094 -9.9794 7.6742 42 1 3.6952 -2.7236 5.1715 43 1 3.0216 -1.2963 3.2826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358875473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:12 Heat of formation + Delta-G solvation = -55.683698 kcal Electronic energy + Delta-G solvation = -22575.863751 eV Core-core repulsion = 19200.293164 eV Total energy + Delta-G solvation = -3375.570587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05878 -38.63664 -37.41369 -35.43061 -34.56053 -31.89328 -31.19064 -30.74327 -27.55271 -27.43095 -26.47799 -25.75829 -24.03237 -22.57167 -21.27521 -20.33468 -18.79515 -18.02759 -16.82210 -16.34828 -15.98140 -15.81282 -15.08548 -14.66883 -14.45589 -14.36366 -14.22835 -13.87381 -13.70926 -13.18099 -13.15341 -12.67669 -12.57074 -12.41722 -12.13710 -11.94232 -11.50222 -11.42122 -11.30030 -11.26573 -11.13254 -11.04765 -10.95138 -10.81019 -10.60650 -10.47786 -10.33319 -10.17154 -8.98832 -8.67835 -8.38665 -7.73183 -7.64389 -6.26959 -3.83078 1.66755 1.74855 3.19038 3.21984 3.26790 3.32399 3.95487 4.02662 4.21210 4.50324 4.55664 4.79936 5.01593 5.04774 5.06626 5.16920 5.17578 5.21532 5.30226 5.32714 5.36866 5.54158 5.62657 5.63288 5.70445 5.75261 5.84598 5.95198 5.99940 6.02511 6.04187 6.12904 6.36111 6.37679 6.56481 6.64821 6.91753 7.03314 7.05620 7.26568 7.60298 7.60424 8.17629 8.53903 9.24245 9.48021 10.04793 10.76532 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.002739 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.443665 B =10221.600318 C =10556.660905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.317 6.317 6 C 0.116 3.884 7 C -0.151 4.151 8 C -0.068 4.068 9 C -0.077 4.077 10 C -0.093 4.093 11 C 0.449 3.551 12 O -0.582 6.582 13 N -0.451 5.451 14 C 0.113 3.887 15 C -0.303 4.303 16 H 0.098 0.902 17 C 0.028 3.972 18 N -0.886 5.886 19 Si 0.926 3.074 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.069 4.069 24 C -0.207 4.207 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 15.541 -6.567 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.231 6.231 6 C 0.071 3.929 7 C -0.169 4.169 8 C -0.086 4.086 9 C -0.078 4.078 10 C -0.133 4.133 11 C 0.237 3.763 12 O -0.466 6.466 13 N -0.171 5.171 14 C -0.031 4.031 15 C -0.431 4.431 16 H 0.115 0.885 17 C -0.174 4.174 18 N -0.526 5.526 19 Si 0.753 3.247 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.087 4.087 24 C -0.226 4.226 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.889 15.430 -7.116 20.181 hybrid contribution 1.024 -0.375 0.369 1.151 sum -9.865 15.055 -6.747 19.222 Atomic orbital electron populations 1.21813 0.94423 1.02577 1.01523 1.21122 0.96904 0.95740 0.97635 1.21782 1.01308 0.94891 1.02354 1.22838 0.99523 0.80046 0.98753 1.85998 1.74632 1.20498 1.42013 1.18883 0.95899 0.90866 0.87235 1.20292 1.05355 0.90866 1.00401 1.20803 0.96316 0.99134 0.92315 1.19374 0.98251 0.93630 0.96504 1.20595 0.97388 0.98800 0.96555 1.19953 0.87007 0.84693 0.84690 1.90537 1.65377 1.64413 1.26322 1.43617 1.17342 1.41139 1.14971 1.21512 0.96648 0.97486 0.87465 1.19653 0.91594 1.07185 1.24656 0.88459 1.25324 0.99706 0.95265 0.97152 1.69998 1.33530 1.16047 1.33025 0.85938 0.82314 0.77501 0.78924 1.20382 1.20986 1.19472 1.20745 0.97197 0.93194 0.97593 1.21082 1.05073 1.00337 0.96077 0.92653 0.91780 0.92778 0.90107 0.92301 0.91823 0.92376 0.92232 0.92152 0.85681 0.85602 0.89452 0.89725 0.92483 0.91246 0.95574 0.92340 0.86187 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 2 C -0.10 -0.81 3.16 -90.62 -0.29 -1.09 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C 0.06 0.67 4.12 37.16 0.15 0.82 16 5 O -0.32 -4.35 9.67 -19.41 -0.19 -4.54 16 6 C 0.12 1.78 6.69 -39.22 -0.26 1.52 16 7 C -0.15 -2.37 9.99 -39.44 -0.39 -2.76 16 8 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 9 C -0.08 -1.38 4.37 -104.60 -0.46 -1.83 16 10 C -0.09 -1.73 4.35 -29.04 -0.13 -1.85 16 11 C 0.45 11.04 7.62 -10.98 -0.08 10.96 16 12 O -0.58 -16.50 15.72 5.54 0.09 -16.41 16 13 N -0.45 -11.70 3.02 -122.19 -0.37 -12.07 16 14 C 0.11 2.52 8.52 59.85 0.51 3.03 16 15 C -0.30 -8.59 9.31 -14.94 -0.14 -8.72 16 16 H 0.10 2.90 7.39 -52.48 -0.39 2.51 16 17 C 0.03 0.75 5.12 -17.47 -0.09 0.66 16 18 N -0.89 -23.81 10.56 55.50 0.59 -23.23 16 19 Si 0.93 21.09 29.57 -169.99 -5.03 16.07 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 24 C -0.21 -3.11 9.04 -39.43 -0.36 -3.47 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.09 1.47 8.05 -51.93 -0.42 1.05 16 37 H 0.08 1.37 7.35 -51.93 -0.38 0.99 16 38 H 0.06 1.32 7.56 -51.93 -0.39 0.92 16 39 H 0.07 1.63 7.00 -51.93 -0.36 1.27 16 40 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -32.33 354.30 -7.94 -40.27 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.75 Total: 1.81 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.62 Total: -7.24 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.22 Total: -35.30 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.10 Total: -20.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.33 -7.94 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.416 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds