Wall clock time and date at job start Tue Mar 31 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.53000 * 109.47005 * 120.00126 * 2 1 3 5 5 O 1.42903 * 109.47316 * 65.00009 * 4 2 1 6 6 C 1.35895 * 117.00211 * 179.97438 * 5 4 2 7 7 C 1.38726 * 120.05880 * 179.97438 * 6 5 4 8 8 C 1.38140 * 119.95017 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05231 * 0.02562 * 8 7 6 10 10 C 1.50693 * 119.94619 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47285 * 89.99741 * 10 9 8 12 12 O 1.21296 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00328 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99633 * 0.02562 * 13 11 10 15 15 C 1.37089 * 120.00130 * 180.02562 * 13 11 10 16 16 H 1.08009 * 119.99796 * 21.71065 * 15 13 11 17 17 C 1.38949 * 120.00162 * 201.70753 * 15 13 11 18 18 N 1.31408 * 119.99924 * 11.34494 * 17 15 13 19 19 Si 1.86803 * 120.00129 * 191.34232 * 17 15 13 20 20 H 1.48502 * 109.46871 * 85.07330 * 19 17 15 21 21 H 1.48496 * 109.47343 * 205.07421 * 19 17 15 22 22 H 1.48501 * 109.47369 * 325.07643 * 19 17 15 23 23 C 1.38264 * 120.11191 * 0.25492 * 9 8 7 24 24 C 1.38147 * 120.05560 * 359.45011 * 23 9 8 25 25 H 1.09005 * 109.46790 * 60.00289 * 1 2 3 26 26 H 1.09006 * 109.47133 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47357 * 300.00119 * 1 2 3 28 28 H 1.08999 * 109.47357 * 239.99881 * 2 1 3 29 29 H 1.09002 * 109.47491 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47432 * 300.00209 * 3 2 1 31 31 H 1.08999 * 109.47074 * 59.99708 * 3 2 1 32 32 H 1.08999 * 109.46807 * 304.99758 * 4 2 1 33 33 H 1.08995 * 109.47182 * 185.00239 * 4 2 1 34 34 H 1.08005 * 120.02828 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.97703 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47218 * 330.00276 * 10 9 8 37 37 H 1.09005 * 109.47479 * 210.00150 * 10 9 8 38 38 H 1.09002 * 109.46924 * 92.17631 * 14 13 11 39 39 H 1.09002 * 109.46529 * 212.17008 * 14 13 11 40 40 H 1.08997 * 109.47456 * 332.16939 * 14 13 11 41 41 H 0.96997 * 120.00087 * 179.97438 * 18 17 15 42 42 H 1.08002 * 119.97381 * 179.70578 * 23 9 8 43 43 H 1.08002 * 120.03071 * 180.25315 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0405 -2.8857 2.2328 7 6 1.7066 -4.2322 2.2427 8 6 2.0922 -5.0306 3.3020 9 6 2.8098 -4.4885 4.3523 10 6 3.2286 -5.3615 5.5070 11 6 4.5823 -5.9585 5.2203 12 8 5.1512 -5.7001 4.1806 13 7 5.1613 -6.7788 6.1194 14 6 4.4743 -7.0905 7.3753 15 6 6.3929 -7.3215 5.8588 16 1 7.0495 -6.8510 5.1418 17 6 6.7966 -8.4767 6.5170 18 7 5.9277 -9.1728 7.2150 19 14 8.5743 -9.0402 6.4096 20 1 9.3783 -8.3419 7.4446 21 1 8.6434 -10.5063 6.6348 22 1 9.1147 -8.7201 5.0639 23 6 3.1388 -3.1456 4.3477 24 6 2.7608 -2.3443 3.2877 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -0.2617 2.1369 33 1 3.1262 -0.6444 1.2952 34 1 1.1458 -4.6560 1.4227 35 1 1.8329 -6.0789 3.3100 36 1 2.5000 -6.1611 5.6410 37 1 3.2811 -4.7617 6.4157 38 1 3.8835 -7.9980 7.2507 39 1 5.2110 -7.2420 8.1644 40 1 3.8176 -6.2635 7.6452 41 1 6.2094 -9.9794 7.6742 42 1 3.6952 -2.7236 5.1715 43 1 3.0216 -1.2963 3.2826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358875473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:12 Heat of formation + Delta-G solvation = -73.459023 kcal Electronic energy + Delta-G solvation = -22576.634547 eV Core-core repulsion = 19200.293164 eV Total energy + Delta-G solvation = -3376.341383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23120 -40.32011 -38.67589 -36.63195 -36.14177 -33.75425 -32.74285 -31.95440 -28.91507 -28.04449 -27.92864 -27.15116 -25.87587 -23.72338 -22.59180 -21.09891 -20.54148 -19.12411 -18.85474 -17.84725 -17.30133 -16.88037 -16.55564 -16.38010 -15.99994 -15.68632 -15.33416 -15.16053 -14.92355 -14.38561 -14.30737 -13.95261 -13.77320 -13.57675 -13.35481 -13.18592 -13.06083 -12.96565 -12.75128 -12.66692 -12.44864 -12.22151 -12.11603 -12.09855 -12.00698 -11.89622 -11.52688 -11.46950 -10.99906 -10.33920 -9.90157 -9.67131 -8.98960 -8.30450 -5.95770 0.44231 0.48826 1.37595 1.40247 1.52082 2.07629 2.24286 2.28623 2.76533 3.11314 3.27239 3.76018 3.86008 3.90222 3.94566 3.99963 4.13531 4.24510 4.32335 4.42190 4.46506 4.51692 4.62408 4.65361 4.69985 4.78296 4.79173 4.85590 4.98964 5.01306 5.08538 5.13466 5.19478 5.31422 5.38408 5.38970 5.43235 5.43557 5.45734 5.74920 5.85197 6.12088 6.49703 6.52341 7.20144 7.51529 8.08421 8.70389 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.002739 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.443665 B =10221.600318 C =10556.660905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.142 4.142 4 C 0.055 3.945 5 O -0.325 6.325 6 C 0.114 3.886 7 C -0.161 4.161 8 C -0.080 4.080 9 C -0.103 4.103 10 C -0.079 4.079 11 C 0.441 3.559 12 O -0.629 6.629 13 N -0.468 5.468 14 C 0.121 3.879 15 C -0.342 4.342 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.898 5.898 19 Si 0.988 3.012 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.279 1.279 23 C -0.079 4.079 24 C -0.208 4.208 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.273 0.727 42 H 0.132 0.868 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 16.794 -6.255 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.020 4.020 5 O -0.239 6.239 6 C 0.069 3.931 7 C -0.180 4.180 8 C -0.098 4.098 9 C -0.104 4.104 10 C -0.118 4.118 11 C 0.231 3.769 12 O -0.516 6.516 13 N -0.188 5.188 14 C -0.022 4.022 15 C -0.470 4.470 16 H 0.086 0.914 17 C -0.206 4.206 18 N -0.537 5.537 19 Si 0.812 3.188 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.204 1.204 23 C -0.097 4.097 24 C -0.227 4.227 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.150 0.850 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.497 16.686 -6.775 21.366 hybrid contribution 1.159 -0.703 0.193 1.369 sum -10.339 15.982 -6.582 20.141 Atomic orbital electron populations 1.21803 0.94101 1.01778 1.02513 1.21154 0.97172 0.96612 0.96288 1.21768 1.01394 0.93492 1.03299 1.23146 0.99890 0.78545 1.00401 1.86008 1.74499 1.22004 1.41393 1.19045 0.95347 0.91084 0.87613 1.20510 1.05557 0.91325 1.00575 1.20967 0.96590 0.99634 0.92598 1.19461 0.99729 0.94296 0.96924 1.20509 0.93633 0.99561 0.98137 1.20995 0.88618 0.83636 0.83675 1.90494 1.67119 1.65750 1.28227 1.43903 1.17112 1.41348 1.16414 1.21475 0.96294 0.98860 0.85522 1.19578 0.93111 1.08564 1.25739 0.91394 1.26055 1.03506 0.94734 0.96293 1.70071 1.34870 1.16077 1.32656 0.85027 0.77623 0.77569 0.78585 1.19043 1.19695 1.20386 1.20983 0.97189 0.93015 0.98488 1.21349 1.04419 1.01514 0.95372 0.91293 0.93440 0.92206 0.90838 0.92180 0.90690 0.91646 0.91036 0.92000 0.84259 0.85173 0.87643 0.86963 0.93579 0.92943 0.91025 0.91775 0.85032 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.09 71.98 0.65 -1.43 16 2 C -0.09 -1.43 3.16 -10.80 -0.03 -1.46 16 3 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 4 C 0.05 1.06 4.12 71.98 0.30 1.35 16 5 O -0.32 -8.55 9.67 -92.37 -0.89 -9.44 16 6 C 0.11 3.40 6.69 22.51 0.15 3.55 16 7 C -0.16 -4.99 9.99 22.36 0.22 -4.76 16 8 C -0.08 -2.67 9.69 22.25 0.22 -2.46 16 9 C -0.10 -3.63 4.37 -19.85 -0.09 -3.71 16 10 C -0.08 -2.82 4.35 29.10 0.13 -2.69 16 11 C 0.44 21.88 7.62 87.66 0.67 22.54 16 12 O -0.63 -36.64 15.72 -3.08 -0.05 -36.68 16 13 N -0.47 -24.55 3.02 -658.87 -1.99 -26.54 16 14 C 0.12 5.33 8.52 127.77 1.09 6.42 16 15 C -0.34 -19.87 9.31 84.04 0.78 -19.09 16 16 H 0.07 4.25 7.39 -2.91 -0.02 4.23 16 17 C 0.00 -0.25 5.12 84.93 0.43 0.19 16 18 N -0.90 -48.05 10.56 21.66 0.23 -47.82 16 19 Si 0.99 43.33 29.57 68.60 2.03 45.36 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.08 -2.51 9.69 22.25 0.22 -2.29 16 24 C -0.21 -5.95 9.04 22.37 0.20 -5.75 16 25 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.84 7.82 -2.38 -0.02 0.82 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 33 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.11 3.37 8.05 -2.39 -0.02 3.35 16 37 H 0.11 3.35 7.35 -2.38 -0.02 3.34 16 38 H 0.05 2.10 7.56 -2.39 -0.02 2.08 16 39 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 40 H 0.07 2.44 6.36 -2.39 -0.02 2.42 16 41 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.15 3.31 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -70.98 354.30 5.91 -65.07 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.98 Total: 20.53 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.60 Total: -10.47 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.76 Total: -74.36 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.94 Total: -46.13 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.98 5.91 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.389 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds