Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 H 1.08995 * 109.47380 * 55.60913 * 3 2 1 5 5 C 1.52996 * 109.46975 * 295.60804 * 3 2 1 6 6 C 1.52996 * 109.47181 * 175.60874 * 3 2 1 7 7 H 1.09005 * 109.47480 * 305.30791 * 6 3 2 8 8 O 1.42900 * 109.47300 * 65.30256 * 6 3 2 9 9 C 1.42901 * 114.00478 * 211.96847 * 8 6 3 10 10 C 1.50698 * 109.47358 * 185.30360 * 6 3 2 11 11 O 1.21275 * 120.00314 * 244.99984 * 10 6 3 12 12 N 1.34779 * 119.99823 * 65.00068 * 10 6 3 13 13 C 1.37140 * 120.00035 * 354.96629 * 12 10 6 14 14 H 1.08000 * 120.00023 * 10.56253 * 13 12 10 15 15 C 1.38884 * 120.00527 * 190.55837 * 13 12 10 16 16 N 1.31423 * 119.99568 * 348.10678 * 15 13 12 17 17 Si 1.86799 * 120.00685 * 168.10557 * 15 13 12 18 18 H 1.48508 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47418 * 119.99866 * 17 15 13 20 20 H 1.48495 * 109.47017 * 240.00399 * 17 15 13 21 21 C 1.39783 * 120.00360 * 174.96866 * 12 10 6 22 22 C 1.38957 * 120.07794 * 93.01861 * 21 12 10 23 23 C 1.38087 * 119.92435 * 179.79193 * 22 21 12 24 24 C 1.38312 * 120.07458 * 0.47102 * 23 22 21 25 25 C 1.38311 * 120.15578 * 359.78136 * 24 23 22 26 26 C 1.38084 * 120.07865 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46742 * 60.00046 * 1 2 3 28 28 H 1.08999 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47173 * 300.00258 * 1 2 3 30 30 H 1.08997 * 109.47761 * 239.99400 * 2 1 3 31 31 H 1.09003 * 109.47162 * 119.99725 * 2 1 3 32 32 H 1.09009 * 109.47179 * 300.00197 * 5 3 2 33 33 H 1.09000 * 109.47123 * 59.99908 * 5 3 2 34 34 H 1.09003 * 109.47345 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47456 * 184.88751 * 9 8 6 36 36 H 1.08999 * 109.46909 * 304.88620 * 9 8 6 37 37 H 1.08996 * 109.47053 * 64.88138 * 9 8 6 38 38 H 0.97006 * 120.00069 * 185.02239 * 16 15 13 39 39 H 1.08005 * 120.03866 * 0.02713 * 22 21 12 40 40 H 1.08002 * 119.96519 * 180.23083 * 23 22 21 41 41 H 1.07998 * 119.92140 * 179.76760 * 24 23 22 42 42 H 1.08001 * 119.96134 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.04086 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6139 1.9786 0.8480 5 6 1.6222 2.1311 -1.3008 6 6 3.5660 1.4439 0.1104 7 1 3.8674 0.8719 0.9880 8 8 4.1290 0.8504 -1.0612 9 6 5.3539 0.1523 -0.8281 10 6 4.0589 2.8620 0.2415 11 8 4.7440 3.3491 -0.6326 12 7 3.7384 3.5889 1.3303 13 6 2.8802 3.0758 2.2690 14 1 2.5956 2.0348 2.2288 15 6 2.3773 3.8949 3.2716 16 7 2.8937 5.0876 3.4664 17 14 0.9669 3.3014 4.3430 18 1 0.5686 1.9335 3.9239 19 1 1.4003 3.2770 5.7631 20 1 -0.1891 4.2216 4.1939 21 6 4.2805 4.8657 1.5028 22 6 3.5882 5.9830 1.0521 23 6 4.1247 7.2431 1.2279 24 6 5.3543 7.3932 1.8432 25 6 6.0486 6.2829 2.2885 26 6 5.5158 5.0202 2.1204 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8935 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0484 1.5950 -2.1489 33 1 0.5351 2.1301 -1.3795 34 1 1.9859 3.1587 -1.3010 35 1 5.7610 -0.1945 -1.7778 36 1 6.0683 0.8221 -0.3495 37 1 5.1667 -0.7030 -0.1789 38 1 2.5927 5.6306 4.2118 39 1 2.6297 5.8662 0.5681 40 1 3.5855 8.1122 0.8812 41 1 5.7734 8.3797 1.9762 42 1 7.0087 6.4037 2.7681 43 1 6.0586 4.1536 2.4679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361631364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -45.532986 kcal Electronic energy + Delta-G solvation = -24934.698545 eV Core-core repulsion = 21559.568126 eV Total energy + Delta-G solvation = -3375.130419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77066 -38.07402 -36.42249 -35.33303 -34.52901 -31.68302 -30.20176 -29.78744 -28.70290 -26.89502 -25.61613 -25.07075 -23.62137 -21.46236 -21.36284 -19.70886 -19.12780 -17.93671 -16.46187 -15.95625 -15.36830 -15.22680 -14.70035 -14.58446 -14.36922 -14.16033 -13.77515 -13.41289 -13.21890 -12.81020 -12.62247 -12.47354 -12.34081 -11.81067 -11.60592 -11.52278 -11.45184 -11.33520 -11.24640 -10.89175 -10.76688 -10.56315 -10.39960 -10.34736 -10.28753 -10.01742 -9.89474 -9.71679 -9.30166 -8.23179 -8.09188 -7.72373 -7.66479 -6.15316 -4.04341 2.58339 2.60088 3.03553 3.14126 3.16791 3.69306 3.93454 4.19716 4.71761 4.95450 5.00962 5.27610 5.36769 5.38822 5.57970 5.71830 5.77337 5.86761 5.94716 5.96086 5.99100 6.00788 6.04570 6.08470 6.16492 6.21740 6.40056 6.41975 6.47631 6.48507 6.59419 6.62909 6.86460 6.92398 7.00763 7.14121 7.26280 7.41221 7.54060 7.60812 7.62364 7.83961 8.01594 8.44373 8.95443 9.34127 9.77036 10.56917 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.007775 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.663357 B = 3600.568457 C = 4891.344942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.096 4.096 4 H 0.117 0.883 5 C -0.135 4.135 6 C 0.098 3.902 7 H 0.073 0.927 8 O -0.361 6.361 9 C 0.034 3.966 10 C 0.449 3.551 11 O -0.580 6.580 12 N -0.419 5.419 13 C -0.352 4.352 14 H 0.111 0.889 15 C 0.041 3.959 16 N -0.846 5.846 17 Si 0.917 3.083 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.258 3.742 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.149 4.149 25 C -0.118 4.118 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.271 0.729 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -5.140 -1.903 5.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.115 4.115 4 H 0.134 0.866 5 C -0.193 4.193 6 C 0.037 3.963 7 H 0.091 0.909 8 O -0.278 6.278 9 C -0.063 4.063 10 C 0.238 3.762 11 O -0.463 6.463 12 N -0.138 5.138 13 C -0.477 4.477 14 H 0.128 0.872 15 C -0.166 4.166 16 N -0.481 5.481 17 Si 0.743 3.257 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.168 3.832 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.167 4.167 25 C -0.137 4.137 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.109 -4.710 -2.411 5.406 hybrid contribution -0.548 -0.218 1.304 1.431 sum -1.657 -4.927 -1.108 5.315 Atomic orbital electron populations 1.21808 0.96220 1.00822 1.02029 1.21516 0.95501 0.96578 1.01636 1.21553 0.91766 0.96795 1.01375 0.86568 1.21677 0.99768 1.00726 0.97098 1.21800 0.94464 0.91816 0.88177 0.90908 1.87890 1.37698 1.70197 1.32019 1.22703 0.87235 0.94936 1.01379 1.20649 0.84324 0.88860 0.82367 1.90583 1.42617 1.72501 1.40644 1.41457 1.40922 1.12346 1.19110 1.19803 1.22855 0.96676 1.08415 0.87191 1.25282 0.98048 0.95171 0.98078 1.69960 1.39908 1.09711 1.28566 0.86011 0.81125 0.79043 0.79527 1.19031 1.20679 1.20410 1.16959 0.90315 0.84496 0.91465 1.20774 0.98134 0.92039 0.99043 1.20605 0.96070 0.96079 1.01044 1.20653 0.96235 0.97223 1.02584 1.20588 0.99065 0.92649 1.01391 1.20831 0.96000 0.96392 1.00212 0.92551 0.93413 0.92680 0.91853 0.92560 0.92511 0.93251 0.92788 0.90215 0.94044 0.94778 0.91655 0.88144 0.87972 0.88069 0.87936 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.66 37.16 0.36 -1.62 16 2 C -0.11 -1.69 5.26 -26.73 -0.14 -1.83 16 3 C -0.10 -1.72 1.78 -90.62 -0.16 -1.89 16 4 H 0.12 2.26 5.12 -51.93 -0.27 1.99 16 5 C -0.14 -2.42 8.55 37.16 0.32 -2.10 16 6 C 0.10 1.95 1.39 -27.89 -0.04 1.91 16 7 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 8 O -0.36 -6.94 8.62 -55.09 -0.47 -7.41 16 9 C 0.03 0.54 10.79 101.05 1.09 1.63 16 10 C 0.45 10.75 6.03 -10.99 -0.07 10.68 16 11 O -0.58 -15.64 16.49 -14.30 -0.24 -15.87 16 12 N -0.42 -10.29 2.66 -58.98 -0.16 -10.45 16 13 C -0.35 -8.33 7.82 -14.94 -0.12 -8.45 16 14 H 0.11 2.42 5.08 -52.49 -0.27 2.15 16 15 C 0.04 0.98 5.43 -17.49 -0.09 0.89 16 16 N -0.85 -21.15 9.45 55.49 0.52 -20.63 16 17 Si 0.92 18.61 29.57 -169.99 -5.03 13.58 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.26 6.43 2.27 -83.70 -0.19 6.24 16 22 C -0.08 -1.91 8.51 -39.37 -0.33 -2.25 16 23 C -0.12 -2.51 10.04 -39.61 -0.40 -2.90 16 24 C -0.15 -2.96 10.04 -39.53 -0.40 -3.36 16 25 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 26 C -0.11 -2.71 9.64 -39.37 -0.38 -3.09 16 27 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.01 7.55 -51.92 -0.39 0.61 16 33 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 34 H 0.05 1.10 7.39 -51.93 -0.38 0.72 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 39 H 0.10 2.42 8.06 -52.48 -0.42 1.99 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -28.60 346.36 -7.67 -36.27 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.57 Total: 8.28 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.95 Total: -8.99 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.37 Total: -31.08 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.71 Total: -23.28 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.60 -7.67 -36.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.260 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds