Wall clock time and date at job start Tue Mar 31 2020 07:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 H 1.08995 * 109.47380 * 55.60913 * 3 2 1 5 5 C 1.52996 * 109.46975 * 295.60804 * 3 2 1 6 6 C 1.52996 * 109.47181 * 175.60874 * 3 2 1 7 7 H 1.09005 * 109.47480 * 305.30791 * 6 3 2 8 8 O 1.42900 * 109.47300 * 65.30256 * 6 3 2 9 9 C 1.42901 * 114.00478 * 211.96847 * 8 6 3 10 10 C 1.50698 * 109.47358 * 185.30360 * 6 3 2 11 11 O 1.21275 * 120.00314 * 244.99984 * 10 6 3 12 12 N 1.34779 * 119.99823 * 65.00068 * 10 6 3 13 13 C 1.37140 * 120.00035 * 354.96629 * 12 10 6 14 14 H 1.08000 * 120.00023 * 10.56253 * 13 12 10 15 15 C 1.38884 * 120.00527 * 190.55837 * 13 12 10 16 16 N 1.31423 * 119.99568 * 348.10678 * 15 13 12 17 17 Si 1.86799 * 120.00685 * 168.10557 * 15 13 12 18 18 H 1.48508 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47418 * 119.99866 * 17 15 13 20 20 H 1.48495 * 109.47017 * 240.00399 * 17 15 13 21 21 C 1.39783 * 120.00360 * 174.96866 * 12 10 6 22 22 C 1.38957 * 120.07794 * 93.01861 * 21 12 10 23 23 C 1.38087 * 119.92435 * 179.79193 * 22 21 12 24 24 C 1.38312 * 120.07458 * 0.47102 * 23 22 21 25 25 C 1.38311 * 120.15578 * 359.78136 * 24 23 22 26 26 C 1.38084 * 120.07865 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46742 * 60.00046 * 1 2 3 28 28 H 1.08999 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47173 * 300.00258 * 1 2 3 30 30 H 1.08997 * 109.47761 * 239.99400 * 2 1 3 31 31 H 1.09003 * 109.47162 * 119.99725 * 2 1 3 32 32 H 1.09009 * 109.47179 * 300.00197 * 5 3 2 33 33 H 1.09000 * 109.47123 * 59.99908 * 5 3 2 34 34 H 1.09003 * 109.47345 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47456 * 184.88751 * 9 8 6 36 36 H 1.08999 * 109.46909 * 304.88620 * 9 8 6 37 37 H 1.08996 * 109.47053 * 64.88138 * 9 8 6 38 38 H 0.97006 * 120.00069 * 185.02239 * 16 15 13 39 39 H 1.08005 * 120.03866 * 0.02713 * 22 21 12 40 40 H 1.08002 * 119.96519 * 180.23083 * 23 22 21 41 41 H 1.07998 * 119.92140 * 179.76760 * 24 23 22 42 42 H 1.08001 * 119.96134 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.04086 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6139 1.9786 0.8480 5 6 1.6222 2.1311 -1.3008 6 6 3.5660 1.4439 0.1104 7 1 3.8674 0.8719 0.9880 8 8 4.1290 0.8504 -1.0612 9 6 5.3539 0.1523 -0.8281 10 6 4.0589 2.8620 0.2415 11 8 4.7440 3.3491 -0.6326 12 7 3.7384 3.5889 1.3303 13 6 2.8802 3.0758 2.2690 14 1 2.5956 2.0348 2.2288 15 6 2.3773 3.8949 3.2716 16 7 2.8937 5.0876 3.4664 17 14 0.9669 3.3014 4.3430 18 1 0.5686 1.9335 3.9239 19 1 1.4003 3.2770 5.7631 20 1 -0.1891 4.2216 4.1939 21 6 4.2805 4.8657 1.5028 22 6 3.5882 5.9830 1.0521 23 6 4.1247 7.2431 1.2279 24 6 5.3543 7.3932 1.8432 25 6 6.0486 6.2829 2.2885 26 6 5.5158 5.0202 2.1204 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8935 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0484 1.5950 -2.1489 33 1 0.5351 2.1301 -1.3795 34 1 1.9859 3.1587 -1.3010 35 1 5.7610 -0.1945 -1.7778 36 1 6.0683 0.8221 -0.3495 37 1 5.1667 -0.7030 -0.1789 38 1 2.5927 5.6306 4.2118 39 1 2.6297 5.8662 0.5681 40 1 3.5855 8.1122 0.8812 41 1 5.7734 8.3797 1.9762 42 1 7.0087 6.4037 2.7681 43 1 6.0586 4.1536 2.4679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361631364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:09 Heat of formation + Delta-G solvation = -59.399727 kcal Electronic energy + Delta-G solvation = -24935.299852 eV Core-core repulsion = 21559.568126 eV Total energy + Delta-G solvation = -3375.731726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50376 -39.68608 -38.09754 -36.88281 -36.16385 -33.52993 -31.59885 -31.51116 -30.28409 -28.35181 -27.02759 -26.88282 -24.97503 -23.19492 -23.01122 -21.24338 -20.77109 -19.65665 -18.16405 -17.50993 -17.04259 -16.80028 -16.34595 -16.25812 -15.98856 -15.58529 -15.34783 -14.81152 -14.78918 -14.31724 -14.22221 -14.06585 -13.91128 -13.45083 -13.13859 -12.97118 -12.95374 -12.80359 -12.78660 -12.41906 -12.20353 -12.06170 -12.03283 -11.96377 -11.66659 -11.50831 -11.38575 -11.23944 -10.98005 -10.02409 -9.89773 -9.46469 -9.42064 -7.95870 -5.90909 0.84234 0.88252 1.40021 1.47804 1.58769 1.90385 2.24420 2.64637 3.10367 3.17799 3.25505 3.90424 3.94518 4.08945 4.24602 4.28890 4.30736 4.39673 4.40412 4.53938 4.56763 4.69614 4.75731 4.78174 4.79325 4.81138 4.92122 4.94354 5.10313 5.16695 5.21885 5.26843 5.33497 5.41090 5.43607 5.56777 5.64094 5.69229 5.82931 5.84573 6.06169 6.15079 6.30107 6.63731 7.10900 7.51901 7.93793 8.75049 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.007775 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.663357 B = 3600.568457 C = 4891.344942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.094 4.094 4 H 0.100 0.900 5 C -0.127 4.127 6 C 0.107 3.893 7 H 0.081 0.919 8 O -0.374 6.374 9 C 0.028 3.972 10 C 0.436 3.564 11 O -0.623 6.623 12 N -0.425 5.425 13 C -0.363 4.363 14 H 0.125 0.875 15 C 0.000 4.000 16 N -0.868 5.868 17 Si 0.979 3.021 18 H -0.247 1.247 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.232 3.768 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.142 4.142 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.103 0.897 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -5.969 -1.277 6.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.118 0.882 5 C -0.185 4.185 6 C 0.046 3.954 7 H 0.099 0.901 8 O -0.292 6.292 9 C -0.068 4.068 10 C 0.226 3.774 11 O -0.510 6.510 12 N -0.143 5.143 13 C -0.488 4.488 14 H 0.142 0.858 15 C -0.205 4.205 16 N -0.504 5.504 17 Si 0.803 3.197 18 H -0.170 1.170 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.142 3.858 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.162 4.162 25 C -0.134 4.134 26 C -0.162 4.162 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.122 0.878 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.826 -5.556 -1.781 6.114 hybrid contribution -0.239 0.114 1.087 1.119 sum -2.065 -5.442 -0.694 5.862 Atomic orbital electron populations 1.21796 0.94651 1.02289 1.01928 1.21466 0.96786 0.93917 1.02324 1.21519 0.90288 0.98997 1.00407 0.88199 1.21604 1.01194 0.98345 0.97324 1.21762 0.95688 0.89192 0.88787 0.90101 1.87865 1.38922 1.70380 1.32014 1.22931 0.85617 0.94996 1.03264 1.21474 0.83805 0.90440 0.81652 1.90524 1.44633 1.73841 1.42008 1.41715 1.40746 1.12525 1.19308 1.20192 1.22830 0.97481 1.08295 0.85815 1.26079 0.99830 0.95321 0.99221 1.70133 1.40816 1.10653 1.28758 0.85055 0.77828 0.79346 0.77473 1.16980 1.20936 1.21042 1.17290 0.91173 0.84976 0.92389 1.20812 0.97959 0.93392 1.00552 1.20988 0.96713 0.95823 1.00177 1.21108 0.95409 0.98851 1.00881 1.21001 1.00214 0.91760 1.00460 1.20961 0.96135 0.97542 1.01577 0.92328 0.91175 0.93138 0.91357 0.91657 0.92527 0.90810 0.96554 0.87837 0.96187 0.91926 0.92151 0.90005 0.85121 0.83851 0.84687 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.66 71.98 0.70 -2.77 16 2 C -0.11 -2.92 5.26 30.60 0.16 -2.76 16 3 C -0.09 -3.30 1.78 -10.80 -0.02 -3.32 16 4 H 0.10 3.87 5.12 -2.39 -0.01 3.86 16 5 C -0.13 -4.58 8.55 71.98 0.62 -3.97 16 6 C 0.11 4.27 1.39 29.85 0.04 4.32 16 7 H 0.08 3.05 7.37 -2.38 -0.02 3.03 16 8 O -0.37 -14.33 8.62 -129.99 -1.12 -15.45 16 9 C 0.03 0.86 10.79 113.37 1.22 2.09 16 10 C 0.44 21.72 6.03 87.66 0.53 22.24 16 11 O -0.62 -35.35 16.49 15.97 0.26 -35.08 16 12 N -0.43 -21.69 2.66 -458.91 -1.22 -22.91 16 13 C -0.36 -17.49 7.82 84.02 0.66 -16.83 16 14 H 0.12 5.44 5.08 -2.91 -0.01 5.42 16 15 C 0.00 -0.01 5.43 84.91 0.46 0.45 16 16 N -0.87 -44.12 9.45 21.65 0.20 -43.91 16 17 Si 0.98 37.87 29.57 68.60 2.03 39.90 16 18 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 21 C 0.23 11.99 2.27 38.22 0.09 12.07 16 22 C -0.11 -5.30 8.51 22.41 0.19 -5.11 16 23 C -0.12 -4.91 10.04 22.25 0.22 -4.69 16 24 C -0.14 -5.48 10.04 22.30 0.22 -5.25 16 25 C -0.12 -4.72 10.04 22.25 0.22 -4.49 16 26 C -0.14 -6.89 9.64 22.41 0.22 -6.68 16 27 H 0.06 1.32 6.55 -2.39 -0.02 1.30 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.81 7.95 -2.39 -0.02 1.79 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 2.00 7.55 -2.38 -0.02 1.98 16 33 H 0.07 2.22 6.55 -2.39 -0.02 2.21 16 34 H 0.02 0.67 7.39 -2.39 -0.02 0.65 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.27 13.16 8.32 -92.70 -0.77 12.39 16 39 H 0.08 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 41 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -64.34 346.36 6.67 -57.67 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.99 Total: 34.49 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.53 Total: -14.70 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.01 Total: -66.82 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.86 Total: -50.54 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -64.34 6.67 -57.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.727 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds