Wall clock time and date at job start Tue Mar 31 2020 07:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 H 1.09006 * 109.47305 * 58.62856 * 3 2 1 5 5 C 1.53007 * 109.47142 * 298.63639 * 3 2 1 6 6 C 1.52992 * 109.47617 * 178.63419 * 3 2 1 7 7 H 1.08999 * 109.46979 * 51.59937 * 6 3 2 8 8 O 1.42900 * 109.47213 * 291.60456 * 6 3 2 9 9 C 1.42903 * 114.00217 * 149.99816 * 8 6 3 10 10 C 1.50704 * 109.47464 * 171.60019 * 6 3 2 11 11 O 1.21279 * 119.99336 * 49.02601 * 10 6 3 12 12 N 1.34775 * 119.99802 * 229.02284 * 10 6 3 13 13 C 1.37137 * 119.99398 * 184.58581 * 12 10 6 14 14 H 1.08002 * 120.00232 * 217.42891 * 13 12 10 15 15 C 1.38886 * 120.00483 * 37.42969 * 13 12 10 16 16 N 1.31425 * 119.99873 * 21.73262 * 15 13 12 17 17 Si 1.86799 * 120.00378 * 201.72981 * 15 13 12 18 18 H 1.48504 * 109.47199 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47328 * 120.00063 * 17 15 13 20 20 H 1.48502 * 109.47341 * 239.99910 * 17 15 13 21 21 C 1.39786 * 120.00216 * 4.58636 * 12 10 6 22 22 C 1.38961 * 120.07697 * 49.10031 * 21 12 10 23 23 C 1.38087 * 119.91958 * 179.73849 * 22 21 12 24 24 C 1.38308 * 120.07371 * 0.53533 * 23 22 21 25 25 C 1.38302 * 120.16060 * 359.71408 * 24 23 22 26 26 C 1.38084 * 120.07961 * 0.03060 * 25 24 23 27 27 H 1.09001 * 109.47152 * 299.99774 * 1 2 3 28 28 H 1.09005 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47182 * 59.99921 * 1 2 3 30 30 H 1.09002 * 109.47324 * 119.99465 * 2 1 3 31 31 H 1.08996 * 109.47394 * 239.99815 * 2 1 3 32 32 H 1.09000 * 109.47261 * 157.10311 * 5 3 2 33 33 H 1.09003 * 109.46992 * 277.10833 * 5 3 2 34 34 H 1.09002 * 109.46857 * 37.10127 * 5 3 2 35 35 H 1.09003 * 109.47005 * 59.99611 * 9 8 6 36 36 H 1.09000 * 109.47186 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47147 * 299.99649 * 9 8 6 38 38 H 0.96994 * 120.00104 * 184.97024 * 16 15 13 39 39 H 1.08003 * 120.04007 * 359.97438 * 22 21 12 40 40 H 1.08000 * 119.96086 * 180.25090 * 23 22 21 41 41 H 1.08004 * 119.91369 * 179.70008 * 24 23 22 42 42 H 1.08001 * 119.96182 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.04281 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6567 1.9634 0.8775 5 6 1.5582 2.1538 -1.2661 6 6 3.5695 1.4427 0.0344 7 1 3.9508 0.7981 -0.7575 8 8 4.0176 0.9567 1.3013 9 6 5.2787 0.2864 1.2537 10 6 4.0765 2.8467 -0.1730 11 8 3.6144 3.7604 0.4770 12 7 5.0434 3.0868 -1.0807 13 6 5.5709 4.3467 -1.2035 14 1 5.8333 4.7296 -2.1787 15 6 5.7678 5.1303 -0.0739 16 7 5.8661 4.5655 1.1087 17 14 5.8929 6.9871 -0.2354 18 1 5.7505 7.3706 -1.6629 19 1 4.8134 7.6270 0.5586 20 1 7.2138 7.4401 0.2699 21 6 5.5085 2.0516 -1.8969 22 6 4.6066 1.2418 -2.5765 23 6 5.0697 0.2236 -3.3862 24 6 6.4291 0.0024 -3.5125 25 6 7.3294 0.8032 -2.8335 26 6 6.8736 1.8265 -2.0263 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.5530 3.2308 -1.0982 33 1 2.2285 1.9181 -2.0927 34 1 0.5498 1.8191 -1.5094 35 1 6.0411 0.9723 0.8844 36 1 5.5485 -0.0516 2.2543 37 1 5.2087 -0.5726 0.5863 38 1 5.9311 5.1155 1.9050 39 1 3.5447 1.4110 -2.4745 40 1 4.3694 -0.4036 -3.9178 41 1 6.7883 -0.7978 -4.1426 42 1 8.3903 0.6273 -2.9341 43 1 7.5771 2.4512 -1.4961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361631365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:12 Heat of formation + Delta-G solvation = -36.602779 kcal Electronic energy + Delta-G solvation = -25242.925873 eV Core-core repulsion = 21868.182697 eV Total energy + Delta-G solvation = -3374.743176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04516 -37.99568 -36.77593 -35.40908 -34.17832 -32.15056 -30.60840 -29.76723 -28.61878 -27.22690 -25.74033 -24.76166 -23.53398 -22.03376 -21.64464 -19.87350 -19.20339 -17.37488 -16.83638 -16.31270 -15.54955 -15.22071 -14.93718 -14.51651 -14.27110 -14.19688 -13.79624 -13.54935 -13.33881 -13.02507 -12.79020 -12.71213 -12.28555 -12.15358 -11.71839 -11.60923 -11.52265 -11.45477 -11.05521 -10.88657 -10.86618 -10.68279 -10.53959 -10.39608 -10.27682 -10.26122 -9.80670 -9.68327 -9.13592 -8.43698 -8.35654 -8.08076 -7.02062 -6.28248 -4.00905 1.89871 1.97421 3.24243 3.34377 3.36291 3.82734 4.18803 4.31028 4.54229 4.74139 5.11741 5.18002 5.25097 5.34497 5.39156 5.43252 5.58702 5.64517 5.65287 5.80607 5.82863 5.85521 5.88292 5.95148 6.05718 6.08864 6.16763 6.22729 6.25054 6.28538 6.38916 6.41687 6.54090 6.60712 6.76165 6.77800 6.96955 7.08832 7.22076 7.42942 7.57072 7.70260 8.12282 8.80561 8.97921 9.44514 10.02395 10.78034 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.008212 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.829403 B = 3408.842546 C = 4618.387529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.075 4.075 4 H 0.083 0.917 5 C -0.158 4.158 6 C 0.067 3.933 7 H 0.082 0.918 8 O -0.366 6.366 9 C 0.034 3.966 10 C 0.472 3.528 11 O -0.499 6.499 12 N -0.405 5.405 13 C -0.354 4.354 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.817 5.817 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.284 1.284 21 C 0.172 3.828 22 C -0.186 4.186 23 C -0.101 4.101 24 C -0.169 4.169 25 C -0.102 4.102 26 C -0.137 4.137 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -10.490 -5.280 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.094 4.094 4 H 0.102 0.898 5 C -0.215 4.215 6 C 0.006 3.994 7 H 0.100 0.900 8 O -0.284 6.284 9 C -0.063 4.063 10 C 0.261 3.739 11 O -0.373 6.373 12 N -0.120 5.120 13 C -0.480 4.480 14 H 0.105 0.895 15 C -0.140 4.140 16 N -0.449 5.449 17 Si 0.738 3.262 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.210 1.210 21 C 0.075 3.925 22 C -0.207 4.207 23 C -0.119 4.119 24 C -0.189 4.189 25 C -0.121 4.121 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.444 -9.860 -4.448 11.352 hybrid contribution 0.520 0.865 -0.143 1.019 sum -2.924 -8.996 -4.590 10.514 Atomic orbital electron populations 1.21848 0.96079 1.01025 1.01964 1.21537 0.95540 0.96327 1.02026 1.20997 0.92271 0.96231 0.99913 0.89828 1.22111 1.00866 1.01661 0.96837 1.22742 0.95165 0.94281 0.87224 0.90046 1.87899 1.36365 1.74710 1.29415 1.22733 0.86506 0.95480 1.01601 1.20580 0.80123 0.90120 0.83118 1.90499 1.55478 1.46004 1.45336 1.41433 1.31414 1.06700 1.32414 1.19207 1.45942 0.88905 0.93909 0.89531 1.25174 0.93912 1.00056 0.94861 1.69924 1.39829 1.36718 0.98441 0.86153 0.77505 0.83911 0.78630 1.19346 1.20408 1.21015 1.18376 0.92441 0.88419 0.93290 1.21438 0.99758 0.99533 0.99933 1.20803 0.95446 0.97516 0.98181 1.20837 0.93336 1.01445 1.03240 1.20931 0.98916 0.95467 0.96788 1.21194 0.95214 0.98625 1.00775 0.92749 0.93149 0.92407 0.91468 0.92361 0.91603 0.92308 0.91812 0.93296 0.90256 0.94778 0.92114 0.85579 0.86824 0.87158 0.86842 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.66 37.16 0.36 -1.44 16 2 C -0.12 -1.66 5.37 -26.73 -0.14 -1.80 16 3 C -0.08 -1.34 2.02 -90.62 -0.18 -1.53 16 4 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 5 C -0.16 -2.63 8.48 37.16 0.31 -2.32 16 6 C 0.07 1.39 1.34 -27.89 -0.04 1.35 16 7 H 0.08 1.58 3.91 -51.93 -0.20 1.38 16 8 O -0.37 -7.93 9.99 -35.25 -0.35 -8.28 16 9 C 0.03 0.62 10.81 101.05 1.09 1.72 16 10 C 0.47 11.99 4.71 -10.98 -0.05 11.94 16 11 O -0.50 -14.67 14.03 5.54 0.08 -14.59 16 12 N -0.41 -10.20 2.71 -58.98 -0.16 -10.36 16 13 C -0.35 -9.66 8.72 -14.94 -0.13 -9.79 16 14 H 0.09 2.31 7.92 -52.49 -0.42 1.89 16 15 C 0.07 2.01 4.27 -17.49 -0.07 1.93 16 16 N -0.82 -23.86 11.51 55.49 0.64 -23.22 16 17 Si 0.91 21.63 29.61 -169.99 -5.03 16.60 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.17 3.67 5.11 -83.69 -0.43 3.24 16 22 C -0.19 -3.39 7.19 -39.37 -0.28 -3.67 16 23 C -0.10 -1.54 10.04 -39.61 -0.40 -1.93 16 24 C -0.17 -2.49 10.04 -39.53 -0.40 -2.89 16 25 C -0.10 -1.65 10.04 -39.61 -0.40 -2.04 16 26 C -0.14 -2.73 9.48 -39.37 -0.37 -3.10 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.65 6.07 -51.93 -0.32 0.33 16 30 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.26 7.77 -51.93 -0.40 0.86 16 33 H 0.06 0.97 4.63 -51.93 -0.24 0.73 16 34 H 0.06 0.86 5.68 -51.93 -0.29 0.57 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.27 7.56 8.32 -40.82 -0.34 7.22 16 39 H 0.13 2.22 3.74 -52.48 -0.20 2.03 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.13 2.69 7.91 -52.49 -0.42 2.27 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -31.96 341.40 -7.07 -39.03 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.25 Total: 6.00 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.13 Total: -10.33 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.48 Total: -33.58 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.27 Total: -22.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.96 -7.07 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds