Wall clock time and date at job start Tue Mar 31 2020 07:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 H 1.09006 * 109.47305 * 58.62856 * 3 2 1 5 5 C 1.53007 * 109.47142 * 298.63639 * 3 2 1 6 6 C 1.52992 * 109.47617 * 178.63419 * 3 2 1 7 7 H 1.08999 * 109.46979 * 51.59937 * 6 3 2 8 8 O 1.42900 * 109.47213 * 291.60456 * 6 3 2 9 9 C 1.42903 * 114.00217 * 149.99816 * 8 6 3 10 10 C 1.50704 * 109.47464 * 171.60019 * 6 3 2 11 11 O 1.21279 * 119.99336 * 49.02601 * 10 6 3 12 12 N 1.34775 * 119.99802 * 229.02284 * 10 6 3 13 13 C 1.37137 * 119.99398 * 184.58581 * 12 10 6 14 14 H 1.08002 * 120.00232 * 217.42891 * 13 12 10 15 15 C 1.38886 * 120.00483 * 37.42969 * 13 12 10 16 16 N 1.31425 * 119.99873 * 21.73262 * 15 13 12 17 17 Si 1.86799 * 120.00378 * 201.72981 * 15 13 12 18 18 H 1.48504 * 109.47199 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47328 * 120.00063 * 17 15 13 20 20 H 1.48502 * 109.47341 * 239.99910 * 17 15 13 21 21 C 1.39786 * 120.00216 * 4.58636 * 12 10 6 22 22 C 1.38961 * 120.07697 * 49.10031 * 21 12 10 23 23 C 1.38087 * 119.91958 * 179.73849 * 22 21 12 24 24 C 1.38308 * 120.07371 * 0.53533 * 23 22 21 25 25 C 1.38302 * 120.16060 * 359.71408 * 24 23 22 26 26 C 1.38084 * 120.07961 * 0.03060 * 25 24 23 27 27 H 1.09001 * 109.47152 * 299.99774 * 1 2 3 28 28 H 1.09005 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47182 * 59.99921 * 1 2 3 30 30 H 1.09002 * 109.47324 * 119.99465 * 2 1 3 31 31 H 1.08996 * 109.47394 * 239.99815 * 2 1 3 32 32 H 1.09000 * 109.47261 * 157.10311 * 5 3 2 33 33 H 1.09003 * 109.46992 * 277.10833 * 5 3 2 34 34 H 1.09002 * 109.46857 * 37.10127 * 5 3 2 35 35 H 1.09003 * 109.47005 * 59.99611 * 9 8 6 36 36 H 1.09000 * 109.47186 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47147 * 299.99649 * 9 8 6 38 38 H 0.96994 * 120.00104 * 184.97024 * 16 15 13 39 39 H 1.08003 * 120.04007 * 359.97438 * 22 21 12 40 40 H 1.08000 * 119.96086 * 180.25090 * 23 22 21 41 41 H 1.08004 * 119.91369 * 179.70008 * 24 23 22 42 42 H 1.08001 * 119.96182 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.04281 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6567 1.9634 0.8775 5 6 1.5582 2.1538 -1.2661 6 6 3.5695 1.4427 0.0344 7 1 3.9508 0.7981 -0.7575 8 8 4.0176 0.9567 1.3013 9 6 5.2787 0.2864 1.2537 10 6 4.0765 2.8467 -0.1730 11 8 3.6144 3.7604 0.4770 12 7 5.0434 3.0868 -1.0807 13 6 5.5709 4.3467 -1.2035 14 1 5.8333 4.7296 -2.1787 15 6 5.7678 5.1303 -0.0739 16 7 5.8661 4.5655 1.1087 17 14 5.8929 6.9871 -0.2354 18 1 5.7505 7.3706 -1.6629 19 1 4.8134 7.6270 0.5586 20 1 7.2138 7.4401 0.2699 21 6 5.5085 2.0516 -1.8969 22 6 4.6066 1.2418 -2.5765 23 6 5.0697 0.2236 -3.3862 24 6 6.4291 0.0024 -3.5125 25 6 7.3294 0.8032 -2.8335 26 6 6.8736 1.8265 -2.0263 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.5530 3.2308 -1.0982 33 1 2.2285 1.9181 -2.0927 34 1 0.5498 1.8191 -1.5094 35 1 6.0411 0.9723 0.8844 36 1 5.5485 -0.0516 2.2543 37 1 5.2087 -0.5726 0.5863 38 1 5.9311 5.1155 1.9050 39 1 3.5447 1.4110 -2.4745 40 1 4.3694 -0.4036 -3.9178 41 1 6.7883 -0.7978 -4.1426 42 1 8.3903 0.6273 -2.9341 43 1 7.5771 2.4512 -1.4961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361631365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:12 Heat of formation + Delta-G solvation = -56.272754 kcal Electronic energy + Delta-G solvation = -25243.778828 eV Core-core repulsion = 21868.182697 eV Total energy + Delta-G solvation = -3375.596130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70995 -39.48950 -38.49243 -36.81145 -35.99070 -34.08979 -31.99961 -31.05183 -30.17961 -28.73561 -27.50653 -26.30427 -25.03751 -23.39729 -23.12367 -21.39662 -20.78735 -19.15239 -18.56277 -17.88865 -17.04084 -16.79300 -16.69441 -16.03702 -15.78791 -15.73855 -15.53616 -14.94974 -14.66263 -14.60248 -14.33893 -14.14368 -13.68773 -13.60565 -13.43445 -13.16306 -12.95784 -12.88155 -12.66504 -12.59837 -12.37972 -12.22901 -12.11531 -11.95279 -11.68442 -11.43792 -11.40613 -11.24031 -11.01031 -10.19437 -9.97465 -9.69193 -8.81682 -8.34552 -6.11526 0.50266 0.58713 1.30056 1.37396 1.46491 2.04148 2.29383 2.80123 2.94389 3.03262 3.23988 3.80157 3.89408 3.94676 4.02546 4.19630 4.25001 4.27557 4.37676 4.42026 4.45559 4.57230 4.61076 4.70886 4.73376 4.73786 4.79666 4.82706 4.98614 5.04190 5.12314 5.22179 5.27948 5.30387 5.35395 5.45857 5.56240 5.63106 5.73652 5.75363 5.99723 6.15528 6.23901 6.84098 7.04144 7.51164 8.13771 8.70951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.008212 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.829403 B = 3408.842546 C = 4618.387529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.074 4.074 4 H 0.051 0.949 5 C -0.151 4.151 6 C 0.076 3.924 7 H 0.100 0.900 8 O -0.388 6.388 9 C 0.034 3.966 10 C 0.463 3.537 11 O -0.560 6.560 12 N -0.420 5.420 13 C -0.368 4.368 14 H 0.082 0.918 15 C 0.024 3.976 16 N -0.857 5.857 17 Si 0.970 3.030 18 H -0.256 1.256 19 H -0.291 1.291 20 H -0.271 1.271 21 C 0.133 3.867 22 C -0.189 4.189 23 C -0.090 4.090 24 C -0.145 4.145 25 C -0.097 4.097 26 C -0.158 4.158 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.012 0.988 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.143 0.857 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -14.075 -8.253 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.207 4.207 6 C 0.016 3.984 7 H 0.117 0.883 8 O -0.306 6.306 9 C -0.062 4.062 10 C 0.253 3.747 11 O -0.439 6.439 12 N -0.135 5.135 13 C -0.494 4.494 14 H 0.099 0.901 15 C -0.184 4.184 16 N -0.491 5.491 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.218 1.218 20 H -0.196 1.196 21 C 0.039 3.961 22 C -0.208 4.208 23 C -0.108 4.108 24 C -0.163 4.163 25 C -0.115 4.115 26 C -0.178 4.178 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.031 0.969 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.147 0.853 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.722 -13.494 -7.487 15.875 hybrid contribution 0.715 1.775 0.597 2.005 sum -3.007 -11.719 -6.889 13.923 Atomic orbital electron populations 1.21833 0.94060 1.02647 1.02050 1.21496 0.97222 0.93155 1.02714 1.21052 0.90310 0.98881 0.99102 0.93049 1.22067 1.03076 0.99245 0.96342 1.22784 0.96788 0.91527 0.87349 0.88251 1.87876 1.37412 1.75006 1.30346 1.22852 0.84442 0.95265 1.03631 1.21381 0.79622 0.91579 0.82146 1.90441 1.57850 1.48061 1.47527 1.41511 1.31561 1.07224 1.33237 1.19352 1.45459 0.91050 0.93571 0.90061 1.25995 0.93771 1.04027 0.94580 1.70033 1.42453 1.37713 0.98883 0.85266 0.77397 0.79016 0.78919 1.17956 1.21755 1.19645 1.18662 0.93741 0.89532 0.94159 1.21612 0.99511 0.99712 1.00014 1.21319 0.96766 0.96226 0.96512 1.21413 0.92744 1.00870 1.01292 1.21269 1.01055 0.93857 0.95358 1.21148 0.94266 1.00091 1.02323 0.93605 0.90707 0.91452 0.92054 0.90306 0.95311 0.91868 0.88183 0.96879 0.88064 0.91580 0.92914 0.85290 0.82328 0.82473 0.83900 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.66 71.98 0.70 -2.41 16 2 C -0.11 -2.84 5.37 30.59 0.16 -2.67 16 3 C -0.07 -2.68 2.02 -10.79 -0.02 -2.70 16 4 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 5 C -0.15 -5.01 8.48 71.98 0.61 -4.40 16 6 C 0.08 3.24 1.34 29.85 0.04 3.28 16 7 H 0.10 3.77 3.91 -2.39 -0.01 3.76 16 8 O -0.39 -17.24 9.99 -148.97 -1.49 -18.73 16 9 C 0.03 1.28 10.81 113.37 1.23 2.50 16 10 C 0.46 24.84 4.71 87.66 0.41 25.25 16 11 O -0.56 -35.47 14.03 -3.01 -0.04 -35.51 16 12 N -0.42 -22.23 2.71 -458.90 -1.24 -23.48 16 13 C -0.37 -21.28 8.72 84.02 0.73 -20.55 16 14 H 0.08 4.59 7.92 -2.91 -0.02 4.56 16 15 C 0.02 1.41 4.27 84.91 0.36 1.77 16 16 N -0.86 -53.65 11.51 21.65 0.25 -53.40 16 17 Si 0.97 46.88 29.61 68.60 2.03 48.91 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.13 5.76 5.11 38.22 0.20 5.95 16 22 C -0.19 -6.44 7.19 22.41 0.16 -6.28 16 23 C -0.09 -2.25 10.04 22.25 0.22 -2.03 16 24 C -0.14 -3.39 10.04 22.30 0.22 -3.16 16 25 C -0.10 -2.80 10.04 22.25 0.22 -2.58 16 26 C -0.16 -6.30 9.48 22.41 0.21 -6.08 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.27 6.07 -2.39 -0.01 1.25 16 30 H 0.06 1.68 7.89 -2.39 -0.02 1.66 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.14 7.77 -2.39 -0.02 1.12 16 33 H 0.06 2.02 4.63 -2.39 -0.01 2.01 16 34 H 0.10 2.51 5.68 -2.39 -0.01 2.50 16 35 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.07 1.99 8.09 -2.39 -0.02 1.98 16 38 H 0.26 15.87 8.32 -92.71 -0.77 15.10 16 39 H 0.13 4.29 3.74 -2.91 -0.01 4.28 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 Total: -1.00 -78.08 341.40 5.97 -72.12 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 1.00 Total: 24.19 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.46 Total: -14.10 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.00 Total: -76.87 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.53 Total: -54.23 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.08 5.97 -72.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.844 kcal (2) G-P(sol) polarization free energy of solvation -78.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds