Wall clock time and date at job start Tue Mar 31 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46916 * 2 1 4 4 H 1.09005 * 109.47196 * 305.68276 * 3 2 1 5 5 C 1.52994 * 109.47592 * 65.68744 * 3 2 1 6 6 C 1.53001 * 109.46911 * 185.68904 * 3 2 1 7 7 H 1.09007 * 109.47462 * 53.88635 * 6 3 2 8 8 O 1.42898 * 109.47038 * 293.89302 * 6 3 2 9 9 C 1.42903 * 114.00281 * 149.99806 * 8 6 3 10 10 C 1.50694 * 109.47285 * 173.88988 * 6 3 2 11 11 O 1.21280 * 119.99878 * 69.62379 * 10 6 3 12 12 N 1.34774 * 119.99914 * 249.62150 * 10 6 3 13 13 C 1.37147 * 119.99719 * 174.26084 * 12 10 6 14 14 H 1.08002 * 119.99864 * 240.71170 * 13 12 10 15 15 C 1.38887 * 120.00031 * 60.71909 * 13 12 10 16 16 N 1.31416 * 120.00278 * 52.16482 * 15 13 12 17 17 Si 1.86801 * 119.99913 * 232.16391 * 15 13 12 18 18 H 1.48498 * 109.46919 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47223 * 119.99994 * 17 15 13 20 20 H 1.48498 * 109.46993 * 239.99839 * 17 15 13 21 21 C 1.39786 * 120.00294 * 354.26599 * 12 10 6 22 22 C 1.38962 * 120.07813 * 55.45605 * 21 12 10 23 23 C 1.38083 * 119.91551 * 179.74347 * 22 21 12 24 24 C 1.38301 * 120.08486 * 0.53553 * 23 22 21 25 25 C 1.38317 * 120.15394 * 359.71924 * 24 23 22 26 26 C 1.38081 * 120.07450 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46748 * 60.00122 * 1 2 3 28 28 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46761 * 299.99985 * 1 2 3 30 30 H 1.09002 * 109.46775 * 239.99534 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99878 * 2 1 3 32 32 H 1.09000 * 109.46973 * 300.00109 * 5 3 2 33 33 H 1.09005 * 109.47232 * 59.99554 * 5 3 2 34 34 H 1.08999 * 109.47196 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47414 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46988 * 299.99750 * 9 8 6 37 37 H 1.09003 * 109.46730 * 60.00257 * 9 8 6 38 38 H 0.96999 * 120.00763 * 184.97954 * 16 15 13 39 39 H 1.07995 * 120.03721 * 0.02562 * 22 21 12 40 40 H 1.08001 * 119.95671 * 180.25347 * 23 22 21 41 41 H 1.07999 * 119.92966 * 179.69655 * 24 23 22 42 42 H 1.07997 * 119.96099 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.03661 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 1.6501 2.1213 1.3145 6 6 3.5633 1.4449 -0.1430 7 1 3.8466 0.8675 -1.0231 8 8 4.1518 0.8595 1.0202 9 6 5.3949 0.1992 0.7732 10 6 4.0515 2.8625 -0.2938 11 8 3.9954 3.6264 0.6466 12 7 4.5506 3.2815 -1.4735 13 6 4.8853 4.6001 -1.6469 14 1 4.3926 5.1867 -2.4082 15 6 5.8580 5.1812 -0.8437 16 7 7.0359 4.6113 -0.7215 17 14 5.4921 6.7728 0.0630 18 1 4.1047 7.2073 -0.2399 19 1 5.6347 6.5538 1.5248 20 1 6.4460 7.8229 -0.3756 21 6 4.7271 2.3721 -2.5203 22 6 3.6555 1.6089 -2.9680 23 6 3.8324 0.7154 -4.0058 24 6 5.0765 0.5715 -4.5923 25 6 6.1466 1.3257 -4.1458 26 6 5.9759 2.2249 -3.1119 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5649 2.1196 1.4163 33 1 2.0942 1.5790 2.1492 34 1 2.0139 3.1489 1.3146 35 1 5.7764 -0.2177 1.7052 36 1 5.2428 -0.6032 0.0513 37 1 6.1137 0.9152 0.3747 38 1 7.6899 4.9765 -0.1054 39 1 2.6847 1.7178 -2.5077 40 1 2.9990 0.1249 -4.3569 41 1 5.2131 -0.1316 -5.4006 42 1 7.1167 1.2111 -4.6063 43 1 6.8119 2.8132 -2.7635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361631366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:15 Heat of formation + Delta-G solvation = -46.464217 kcal Electronic energy + Delta-G solvation = -25076.786378 eV Core-core repulsion = 21701.615577 eV Total energy + Delta-G solvation = -3375.170800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01170 -38.12144 -36.85766 -35.28300 -34.37479 -32.35608 -30.43897 -29.88472 -28.70260 -27.23040 -25.98927 -24.82467 -23.40079 -21.88647 -21.65460 -20.00718 -19.19959 -17.54022 -16.89452 -16.16553 -15.51136 -15.43390 -14.96100 -14.51137 -14.29909 -14.17963 -13.92399 -13.52523 -13.41887 -12.97531 -12.81334 -12.77777 -12.46966 -12.07487 -11.91651 -11.77594 -11.59551 -11.44276 -11.18376 -10.96637 -10.80505 -10.67966 -10.51771 -10.45429 -10.29502 -10.19353 -10.12776 -9.78449 -8.69612 -8.43554 -8.31200 -8.14962 -7.22551 -6.53803 -4.15198 1.94959 2.04257 3.24870 3.43461 3.51110 3.67645 4.08803 4.27045 4.45678 4.66352 4.86424 5.14609 5.19349 5.22798 5.45053 5.47408 5.53214 5.55683 5.67325 5.72235 5.78014 5.84305 5.87552 6.00303 6.03232 6.06731 6.07744 6.17327 6.26477 6.31722 6.36125 6.46417 6.53327 6.70326 6.72053 6.98410 7.00494 7.16045 7.33498 7.42706 7.48635 7.60453 8.23789 8.79025 8.85190 9.31266 9.90643 10.36215 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.008451 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.564060 B = 3312.364505 C = 4664.006227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.147 4.147 6 C 0.069 3.931 7 H 0.082 0.918 8 O -0.363 6.363 9 C 0.029 3.971 10 C 0.473 3.527 11 O -0.521 6.521 12 N -0.402 5.402 13 C -0.399 4.399 14 H 0.084 0.916 15 C 0.120 3.880 16 N -0.795 5.795 17 Si 0.885 3.115 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.291 1.291 21 C 0.160 3.840 22 C -0.169 4.169 23 C -0.110 4.110 24 C -0.160 4.160 25 C -0.112 4.112 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 -10.506 -2.714 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.204 4.204 6 C 0.007 3.993 7 H 0.099 0.901 8 O -0.280 6.280 9 C -0.068 4.068 10 C 0.261 3.739 11 O -0.398 6.398 12 N -0.119 5.119 13 C -0.521 4.521 14 H 0.102 0.898 15 C -0.098 4.098 16 N -0.422 5.422 17 Si 0.710 3.290 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.219 1.219 21 C 0.066 3.934 22 C -0.190 4.190 23 C -0.129 4.129 24 C -0.179 4.179 25 C -0.131 4.131 26 C -0.139 4.139 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.375 -10.041 -1.937 11.553 hybrid contribution 0.325 0.676 0.087 0.755 sum -5.051 -9.365 -1.850 10.800 Atomic orbital electron populations 1.21811 0.96009 1.01089 1.01927 1.21534 0.95525 0.96100 1.02169 1.21091 0.91584 0.96724 0.99989 0.90370 1.21833 0.99396 1.02760 0.96363 1.22562 0.94335 0.92923 0.89439 0.90073 1.87904 1.36120 1.72098 1.31897 1.22785 0.86632 0.95997 1.01341 1.21212 0.79133 0.89243 0.84299 1.90473 1.54963 1.56331 1.37998 1.41268 1.55084 1.06710 1.08852 1.18611 1.24106 0.82875 1.26534 0.89823 1.25289 0.91244 0.98333 0.94936 1.70426 1.01856 1.42552 1.27378 0.86692 0.79462 0.82135 0.80707 1.18777 1.20110 1.21851 1.18693 0.92317 0.89489 0.92865 1.21259 0.98116 1.00434 0.99161 1.20791 0.96977 0.98749 0.96360 1.20884 0.93534 1.01810 1.01692 1.20996 0.98366 0.96733 0.96958 1.21494 0.97469 0.98224 0.96707 0.92903 0.93120 0.92425 0.92335 0.91356 0.93608 0.92190 0.90527 0.89975 0.94371 0.93690 0.91949 0.86588 0.86922 0.87206 0.86873 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.68 37.16 0.36 -1.35 16 2 C -0.12 -1.56 5.24 -26.73 -0.14 -1.70 16 3 C -0.08 -1.26 1.80 -90.62 -0.16 -1.42 16 4 H 0.08 1.30 7.03 -51.93 -0.36 0.94 16 5 C -0.15 -2.56 8.42 37.15 0.31 -2.25 16 6 C 0.07 1.35 1.23 -27.89 -0.03 1.31 16 7 H 0.08 1.53 4.50 -51.92 -0.23 1.29 16 8 O -0.36 -7.16 9.04 -47.08 -0.43 -7.59 16 9 C 0.03 0.50 10.81 101.05 1.09 1.59 16 10 C 0.47 11.56 6.28 -10.99 -0.07 11.49 16 11 O -0.52 -14.44 13.74 -6.29 -0.09 -14.53 16 12 N -0.40 -10.02 2.68 -58.98 -0.16 -10.18 16 13 C -0.40 -10.92 8.27 -14.93 -0.12 -11.04 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 15 C 0.12 3.28 4.33 -17.49 -0.08 3.20 16 16 N -0.79 -21.69 13.87 55.49 0.77 -20.92 16 17 Si 0.89 22.01 29.36 -169.99 -4.99 17.02 16 18 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.16 3.47 4.84 -83.69 -0.41 3.06 16 22 C -0.17 -3.09 7.32 -39.37 -0.29 -3.38 16 23 C -0.11 -1.71 10.04 -39.62 -0.40 -2.10 16 24 C -0.16 -2.44 10.04 -39.53 -0.40 -2.84 16 25 C -0.11 -1.90 10.04 -39.61 -0.40 -2.30 16 26 C -0.12 -2.49 9.57 -39.37 -0.38 -2.87 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.65 6.59 -51.92 -0.34 0.31 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 32 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 33 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 34 H 0.08 1.60 6.03 -51.93 -0.31 1.28 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.27 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.12 2.01 5.86 -52.49 -0.31 1.70 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.14 3.28 7.96 -52.48 -0.42 2.87 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -30.23 347.33 -7.25 -37.48 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.49 Total: 4.09 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.10 Total: -10.60 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.61 Total: -31.10 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.51 Total: -22.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.99 Total: 17.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.23 -7.25 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.985 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds