Wall clock time and date at job start Tue Mar 31 2020 07:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46916 * 2 1 4 4 H 1.09005 * 109.47196 * 305.68276 * 3 2 1 5 5 C 1.52994 * 109.47592 * 65.68744 * 3 2 1 6 6 C 1.53001 * 109.46911 * 185.68904 * 3 2 1 7 7 H 1.09007 * 109.47462 * 53.88635 * 6 3 2 8 8 O 1.42898 * 109.47038 * 293.89302 * 6 3 2 9 9 C 1.42903 * 114.00281 * 149.99806 * 8 6 3 10 10 C 1.50694 * 109.47285 * 173.88988 * 6 3 2 11 11 O 1.21280 * 119.99878 * 69.62379 * 10 6 3 12 12 N 1.34774 * 119.99914 * 249.62150 * 10 6 3 13 13 C 1.37147 * 119.99719 * 174.26084 * 12 10 6 14 14 H 1.08002 * 119.99864 * 240.71170 * 13 12 10 15 15 C 1.38887 * 120.00031 * 60.71909 * 13 12 10 16 16 N 1.31416 * 120.00278 * 52.16482 * 15 13 12 17 17 Si 1.86801 * 119.99913 * 232.16391 * 15 13 12 18 18 H 1.48498 * 109.46919 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47223 * 119.99994 * 17 15 13 20 20 H 1.48498 * 109.46993 * 239.99839 * 17 15 13 21 21 C 1.39786 * 120.00294 * 354.26599 * 12 10 6 22 22 C 1.38962 * 120.07813 * 55.45605 * 21 12 10 23 23 C 1.38083 * 119.91551 * 179.74347 * 22 21 12 24 24 C 1.38301 * 120.08486 * 0.53553 * 23 22 21 25 25 C 1.38317 * 120.15394 * 359.71924 * 24 23 22 26 26 C 1.38081 * 120.07450 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46748 * 60.00122 * 1 2 3 28 28 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46761 * 299.99985 * 1 2 3 30 30 H 1.09002 * 109.46775 * 239.99534 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99878 * 2 1 3 32 32 H 1.09000 * 109.46973 * 300.00109 * 5 3 2 33 33 H 1.09005 * 109.47232 * 59.99554 * 5 3 2 34 34 H 1.08999 * 109.47196 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47414 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46988 * 299.99750 * 9 8 6 37 37 H 1.09003 * 109.46730 * 60.00257 * 9 8 6 38 38 H 0.96999 * 120.00763 * 184.97954 * 16 15 13 39 39 H 1.07995 * 120.03721 * 0.02562 * 22 21 12 40 40 H 1.08001 * 119.95671 * 180.25347 * 23 22 21 41 41 H 1.07999 * 119.92966 * 179.69655 * 24 23 22 42 42 H 1.07997 * 119.96099 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.03661 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 1.6501 2.1213 1.3145 6 6 3.5633 1.4449 -0.1430 7 1 3.8466 0.8675 -1.0231 8 8 4.1518 0.8595 1.0202 9 6 5.3949 0.1992 0.7732 10 6 4.0515 2.8625 -0.2938 11 8 3.9954 3.6264 0.6466 12 7 4.5506 3.2815 -1.4735 13 6 4.8853 4.6001 -1.6469 14 1 4.3926 5.1867 -2.4082 15 6 5.8580 5.1812 -0.8437 16 7 7.0359 4.6113 -0.7215 17 14 5.4921 6.7728 0.0630 18 1 4.1047 7.2073 -0.2399 19 1 5.6347 6.5538 1.5248 20 1 6.4460 7.8229 -0.3756 21 6 4.7271 2.3721 -2.5203 22 6 3.6555 1.6089 -2.9680 23 6 3.8324 0.7154 -4.0058 24 6 5.0765 0.5715 -4.5923 25 6 6.1466 1.3257 -4.1458 26 6 5.9759 2.2249 -3.1119 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5649 2.1196 1.4163 33 1 2.0942 1.5790 2.1492 34 1 2.0139 3.1489 1.3146 35 1 5.7764 -0.2177 1.7052 36 1 5.2428 -0.6032 0.0513 37 1 6.1137 0.9152 0.3747 38 1 7.6899 4.9765 -0.1054 39 1 2.6847 1.7178 -2.5077 40 1 2.9990 0.1249 -4.3569 41 1 5.2131 -0.1316 -5.4006 42 1 7.1167 1.2111 -4.6063 43 1 6.8119 2.8132 -2.7635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361631366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:14 Heat of formation + Delta-G solvation = -63.399273 kcal Electronic energy + Delta-G solvation = -25077.520737 eV Core-core repulsion = 21701.615577 eV Total energy + Delta-G solvation = -3375.905159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66189 -39.59322 -38.51542 -36.59090 -36.17592 -34.32041 -31.83714 -31.12091 -30.26505 -28.74195 -27.53339 -26.48219 -24.77671 -23.31571 -23.13233 -21.47931 -20.75118 -19.34659 -18.53076 -17.73196 -17.08313 -16.85792 -16.75335 -16.06724 -15.88872 -15.75082 -15.42162 -14.93816 -14.79855 -14.44782 -14.35687 -14.17945 -13.93017 -13.85490 -13.49338 -13.31719 -12.95413 -12.83856 -12.68994 -12.62197 -12.31254 -12.18897 -12.13171 -11.89443 -11.78989 -11.57784 -11.41408 -11.29068 -10.60460 -10.21237 -10.01039 -9.67779 -9.04092 -8.51402 -6.23875 0.53009 0.62917 1.21384 1.36403 1.46717 1.88100 2.20203 2.61668 2.72877 3.04056 3.08372 3.77388 3.85833 3.96116 4.11782 4.19227 4.27379 4.29150 4.41016 4.41791 4.47279 4.63124 4.67414 4.70394 4.72811 4.76308 4.84821 4.91349 5.02546 5.06653 5.21405 5.25247 5.30372 5.33221 5.33962 5.54069 5.60178 5.64520 5.76627 5.82458 5.99101 6.11962 6.27802 6.83870 6.94151 7.39519 8.00265 8.30470 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.008451 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.564060 B = 3312.364505 C = 4664.006227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.074 4.074 4 H 0.078 0.922 5 C -0.140 4.140 6 C 0.082 3.918 7 H 0.093 0.907 8 O -0.376 6.376 9 C 0.028 3.972 10 C 0.458 3.542 11 O -0.571 6.571 12 N -0.413 5.413 13 C -0.418 4.418 14 H 0.067 0.933 15 C 0.090 3.910 16 N -0.817 5.817 17 Si 0.926 3.074 18 H -0.270 1.270 19 H -0.291 1.291 20 H -0.270 1.270 21 C 0.124 3.876 22 C -0.168 4.168 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.109 4.109 26 C -0.146 4.146 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.273 0.727 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.137 0.863 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -13.928 -4.770 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.197 4.197 6 C 0.021 3.979 7 H 0.111 0.889 8 O -0.294 6.294 9 C -0.068 4.068 10 C 0.249 3.751 11 O -0.452 6.452 12 N -0.131 5.131 13 C -0.541 4.541 14 H 0.085 0.915 15 C -0.126 4.126 16 N -0.446 5.446 17 Si 0.750 3.250 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.196 1.196 21 C 0.032 3.968 22 C -0.188 4.188 23 C -0.115 4.115 24 C -0.157 4.157 25 C -0.127 4.127 26 C -0.166 4.166 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.027 0.973 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.992 -13.476 -4.040 15.710 hybrid contribution 0.837 1.606 0.591 1.905 sum -6.155 -11.870 -3.449 13.808 Atomic orbital electron populations 1.21795 0.94081 1.02543 1.02113 1.21480 0.97080 0.93136 1.02740 1.21176 0.89502 0.99293 0.99304 0.90392 1.21743 1.01033 1.00171 0.96801 1.22526 0.95937 0.89616 0.89827 0.88921 1.87890 1.36932 1.72154 1.32436 1.22936 0.84937 0.95543 1.03418 1.22125 0.78426 0.91151 0.83441 1.90428 1.57195 1.58098 1.39448 1.41336 1.55029 1.06655 1.10040 1.18540 1.23886 0.85010 1.26685 0.91523 1.25766 0.91180 1.00193 0.95435 1.70448 1.02195 1.43860 1.28145 0.86062 0.79308 0.80740 0.78889 1.19437 1.21727 1.19587 1.18854 0.93980 0.91287 0.92685 1.21408 0.97210 1.00251 0.99940 1.21301 0.98603 0.97308 0.94301 1.21416 0.92313 1.00615 1.01372 1.21274 1.00514 0.95436 0.95483 1.21352 0.96327 0.99952 0.98988 0.92332 0.91028 0.92696 0.90878 0.91650 0.90723 0.92947 0.94619 0.87392 0.91512 0.97311 0.91724 0.85891 0.82346 0.82600 0.84478 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.68 71.99 0.70 -2.11 16 2 C -0.11 -2.55 5.24 30.60 0.16 -2.39 16 3 C -0.07 -2.41 1.80 -10.80 -0.02 -2.43 16 4 H 0.08 2.52 7.03 -2.38 -0.02 2.51 16 5 C -0.14 -4.95 8.42 71.98 0.61 -4.34 16 6 C 0.08 3.22 1.23 29.85 0.04 3.26 16 7 H 0.09 3.38 4.50 -2.38 -0.01 3.37 16 8 O -0.38 -14.90 9.04 -137.65 -1.24 -16.14 16 9 C 0.03 0.94 10.81 113.37 1.23 2.17 16 10 C 0.46 23.45 6.28 87.66 0.55 24.01 16 11 O -0.57 -33.67 13.74 8.30 0.11 -33.56 16 12 N -0.41 -21.60 2.68 -458.90 -1.23 -22.83 16 13 C -0.42 -24.28 8.27 84.02 0.69 -23.58 16 14 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 15 C 0.09 5.18 4.33 84.91 0.37 5.55 16 16 N -0.82 -47.27 13.87 21.65 0.30 -46.97 16 17 Si 0.93 47.43 29.36 68.60 2.01 49.44 16 18 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.12 5.45 4.84 38.22 0.19 5.63 16 22 C -0.17 -5.76 7.32 22.41 0.16 -5.60 16 23 C -0.10 -2.50 10.04 22.25 0.22 -2.27 16 24 C -0.14 -3.48 10.04 22.30 0.22 -3.25 16 25 C -0.11 -3.43 10.04 22.25 0.22 -3.21 16 26 C -0.15 -6.23 9.57 22.41 0.21 -6.02 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.07 6.59 -2.38 -0.02 1.05 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.62 8.00 -2.39 -0.02 1.60 16 32 H 0.07 2.12 6.59 -2.39 -0.02 2.11 16 33 H 0.05 1.88 7.53 -2.38 -0.02 1.86 16 34 H 0.03 1.54 6.03 -2.39 -0.01 1.53 16 35 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.27 14.84 8.32 -92.71 -0.77 14.06 16 39 H 0.12 4.00 5.86 -2.91 -0.02 3.98 16 40 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 43 H 0.10 5.00 7.96 -2.91 -0.02 4.98 16 Total: -1.00 -72.52 347.33 6.50 -66.03 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.99 Total: 18.62 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.55 Total: -14.59 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.93 Total: -69.80 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -1.13 Total: -49.70 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.01 Total: 49.44 kcal Total: -72.52 6.50 -66.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.627 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds