Wall clock time and date at job start Tue Mar 31 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47263 * 2 1 4 4 H 1.09004 * 109.47224 * 294.42636 * 3 2 1 5 5 C 1.52997 * 109.47499 * 54.42661 * 3 2 1 6 6 C 1.52997 * 109.47018 * 174.43109 * 3 2 1 7 7 H 1.09000 * 109.47158 * 181.39251 * 6 3 2 8 8 O 1.42903 * 109.47091 * 301.38905 * 6 3 2 9 9 C 1.42894 * 113.99982 * 233.40537 * 8 6 3 10 10 C 1.50700 * 109.47687 * 61.39319 * 6 3 2 11 11 O 1.21290 * 119.99396 * 335.94981 * 10 6 3 12 12 N 1.34767 * 120.00536 * 155.94643 * 10 6 3 13 13 C 1.37138 * 120.00401 * 167.36198 * 12 10 6 14 14 H 1.07998 * 120.00610 * 128.05496 * 13 12 10 15 15 C 1.38897 * 119.99710 * 308.33150 * 13 12 10 16 16 N 1.31424 * 119.99977 * 77.89416 * 15 13 12 17 17 Si 1.86801 * 120.00035 * 257.89598 * 15 13 12 18 18 H 1.48504 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47208 * 119.99690 * 17 15 13 20 20 H 1.48496 * 109.46971 * 239.99887 * 17 15 13 21 21 C 1.39790 * 119.99897 * 347.36155 * 12 10 6 22 22 C 1.38958 * 120.07627 * 295.42314 * 21 12 10 23 23 C 1.38093 * 119.92085 * 179.76652 * 22 21 12 24 24 C 1.38308 * 120.07334 * 0.48610 * 23 22 21 25 25 C 1.38307 * 120.16118 * 359.76691 * 24 23 22 26 26 C 1.38082 * 120.07615 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47138 * 59.99791 * 1 2 3 28 28 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46455 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46455 * 239.99879 * 2 1 3 31 31 H 1.09002 * 109.47138 * 120.00209 * 2 1 3 32 32 H 1.08996 * 109.47382 * 166.82146 * 5 3 2 33 33 H 1.08997 * 109.47055 * 286.82969 * 5 3 2 34 34 H 1.09007 * 109.46623 * 46.82157 * 5 3 2 35 35 H 1.09001 * 109.47458 * 307.73183 * 9 8 6 36 36 H 1.09001 * 109.47817 * 67.73923 * 9 8 6 37 37 H 1.09005 * 109.46884 * 187.73984 * 9 8 6 38 38 H 0.96993 * 119.99787 * 184.96815 * 16 15 13 39 39 H 1.07997 * 120.04049 * 359.97438 * 22 21 12 40 40 H 1.07997 * 119.95884 * 180.23491 * 23 22 21 41 41 H 1.08003 * 119.91483 * 179.74579 * 24 23 22 42 42 H 1.07999 * 119.96176 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.03976 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7605 1.9267 -0.9357 5 6 1.4190 2.2031 1.1732 6 6 3.5636 1.4447 0.1400 7 1 3.9247 2.4728 0.1649 8 8 3.9317 0.7812 1.3510 9 6 4.7839 1.5521 2.2002 10 6 4.1771 0.7251 -1.0335 11 8 3.5294 -0.0968 -1.6467 12 7 5.4451 0.9950 -1.4015 13 6 6.0913 0.1729 -2.2888 14 1 6.5660 0.5902 -3.1646 15 6 6.1305 -1.1972 -2.0642 16 7 5.0784 -1.9375 -2.3328 17 14 7.6786 -1.9877 -1.3801 18 1 8.7130 -0.9443 -1.1637 19 1 7.3668 -2.6502 -0.0882 20 1 8.1866 -2.9967 -2.3439 21 6 6.1017 2.1129 -0.8789 22 6 5.6402 3.3908 -1.1700 23 6 6.2885 4.4928 -0.6480 24 6 7.4018 4.3258 0.1554 25 6 7.8671 3.0555 0.4430 26 6 7.2206 1.9490 -0.0712 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9485 3.1449 1.3168 33 1 0.3693 2.4052 0.9603 34 1 1.4966 1.6008 2.0785 35 1 5.6425 1.9054 1.6293 36 1 4.2310 2.4064 2.5910 37 1 5.1283 0.9326 3.0283 38 1 5.0796 -2.8813 -2.1092 39 1 4.7736 3.5220 -1.8009 40 1 5.9280 5.4862 -0.8707 41 1 7.9093 5.1896 0.5590 42 1 8.7370 2.9289 1.0703 43 1 7.5847 0.9573 0.1534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361631367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:18 Heat of formation + Delta-G solvation = -23.744797 kcal Electronic energy + Delta-G solvation = -25224.613278 eV Core-core repulsion = 21850.427666 eV Total energy + Delta-G solvation = -3374.185612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.83568 -38.13775 -36.78218 -35.16152 -33.96733 -32.64542 -30.43770 -29.61812 -28.74208 -27.55260 -25.74346 -24.70470 -23.16835 -21.94037 -21.66338 -19.87452 -19.00439 -17.50102 -16.82724 -15.98842 -15.64420 -15.30915 -14.70611 -14.60786 -14.33841 -13.98990 -13.88325 -13.62057 -13.10311 -13.00033 -12.81744 -12.77674 -12.30976 -12.22798 -12.15171 -11.65645 -11.54188 -11.40549 -11.04666 -10.86690 -10.85742 -10.66463 -10.57762 -10.33323 -10.21959 -10.12623 -9.83973 -9.39280 -8.53842 -8.41012 -8.35312 -7.75749 -7.23319 -6.95652 -3.73289 1.89399 1.94489 3.11565 3.36356 3.39121 3.71614 4.08732 4.29535 4.41108 4.73284 4.90625 5.31024 5.34996 5.40842 5.45694 5.49203 5.61574 5.66688 5.72605 5.81594 5.85222 5.95590 5.98674 6.02015 6.03973 6.07305 6.13606 6.22545 6.30810 6.44797 6.50441 6.54677 6.58595 6.68981 6.93510 7.01521 7.03182 7.15869 7.27153 7.38186 7.50924 7.66117 8.33843 8.85305 9.14838 9.39651 10.05202 10.15515 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.009195 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.230617 B = 3044.412984 C = 4565.431782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.142 4.142 6 C 0.072 3.928 7 H 0.071 0.929 8 O -0.365 6.365 9 C 0.021 3.979 10 C 0.449 3.551 11 O -0.487 6.487 12 N -0.403 5.403 13 C -0.480 4.480 14 H 0.088 0.912 15 C 0.176 3.824 16 N -0.647 5.647 17 Si 0.768 3.232 18 H -0.256 1.256 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.175 3.825 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.161 4.161 25 C -0.110 4.110 26 C -0.130 4.130 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 8.718 7.579 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.199 4.199 6 C 0.011 3.989 7 H 0.089 0.911 8 O -0.283 6.283 9 C -0.076 4.076 10 C 0.238 3.762 11 O -0.363 6.363 12 N -0.121 5.121 13 C -0.594 4.594 14 H 0.105 0.895 15 C -0.057 4.057 16 N -0.264 5.264 17 Si 0.586 3.414 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.082 3.918 22 C -0.181 4.181 23 C -0.125 4.125 24 C -0.179 4.179 25 C -0.129 4.129 26 C -0.150 4.150 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.572 7.851 7.137 10.917 hybrid contribution 1.235 -0.240 0.519 1.361 sum -1.337 7.610 7.655 10.877 Atomic orbital electron populations 1.21827 0.97596 1.00561 1.00487 1.21894 0.93687 0.95893 1.05456 1.21131 0.92418 0.97907 0.98213 0.90868 1.21835 0.99915 0.99298 0.98874 1.22586 0.95163 0.96335 0.84803 0.91082 1.87949 1.67595 1.42360 1.30433 1.22975 0.94310 0.95777 0.94520 1.21210 0.81984 0.86514 0.86471 1.90513 1.57716 1.33435 1.54606 1.40909 1.08586 1.22831 1.39752 1.17802 1.46079 0.86699 1.08772 0.89484 1.25488 0.94186 0.96202 0.89857 1.71183 1.30525 1.07012 1.17633 0.88476 0.91850 0.80109 0.81002 1.17950 1.20136 1.20441 1.18361 0.93836 0.88322 0.91317 1.21259 1.02339 0.91938 1.02541 1.20850 0.95992 0.97698 0.97937 1.20862 0.98315 0.96700 1.02055 1.20951 0.99261 0.92505 1.00178 1.21316 0.97469 0.98875 0.97376 0.93501 0.93588 0.93722 0.87063 0.92452 0.93693 0.92824 0.92433 0.92762 0.94757 0.90441 0.91700 0.86663 0.86842 0.87090 0.86847 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.44 37.16 0.35 -1.93 16 2 C -0.13 -2.52 4.96 -26.73 -0.13 -2.65 16 3 C -0.08 -1.39 2.24 -90.62 -0.20 -1.60 16 4 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 5 C -0.14 -2.06 8.01 37.16 0.30 -1.76 16 6 C 0.07 1.45 1.75 -27.88 -0.05 1.40 16 7 H 0.07 1.33 5.23 -51.93 -0.27 1.06 16 8 O -0.37 -7.31 9.13 -35.23 -0.32 -7.63 16 9 C 0.02 0.34 10.73 101.05 1.08 1.42 16 10 C 0.45 11.03 6.58 -10.99 -0.07 10.96 16 11 O -0.49 -13.38 11.03 5.55 0.06 -13.32 16 12 N -0.40 -9.98 2.66 -58.98 -0.16 -10.14 16 13 C -0.48 -13.12 8.57 -14.93 -0.13 -13.25 16 14 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 15 C 0.18 4.71 4.93 -17.48 -0.09 4.62 16 16 N -0.65 -17.72 11.73 55.49 0.65 -17.07 16 17 Si 0.77 18.27 29.69 -169.99 -5.05 13.22 16 18 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.18 3.69 3.66 -83.69 -0.31 3.39 16 22 C -0.16 -2.93 8.10 -39.37 -0.32 -3.25 16 23 C -0.11 -1.61 10.04 -39.61 -0.40 -2.00 16 24 C -0.16 -2.32 10.04 -39.53 -0.40 -2.71 16 25 C -0.11 -1.74 9.97 -39.61 -0.39 -2.14 16 26 C -0.13 -2.53 7.71 -39.37 -0.30 -2.84 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.61 6.65 -51.93 -0.35 0.27 16 30 H 0.11 2.55 5.21 -51.93 -0.27 2.28 16 31 H 0.06 1.15 7.48 -51.93 -0.39 0.76 16 32 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.05 0.69 7.16 -51.93 -0.37 0.32 16 34 H 0.06 0.85 8.03 -51.92 -0.42 0.43 16 35 H 0.05 0.92 4.88 -51.93 -0.25 0.67 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 39 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -29.64 342.38 -7.23 -36.87 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.52 Total: 5.25 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.06 Total: -12.35 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.49 Total: -27.20 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.26 Total: -20.95 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.05 Total: 13.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.64 -7.23 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.129 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds