Wall clock time and date at job start Tue Mar 31 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47263 * 2 1 4 4 H 1.09004 * 109.47224 * 294.42636 * 3 2 1 5 5 C 1.52997 * 109.47499 * 54.42661 * 3 2 1 6 6 C 1.52997 * 109.47018 * 174.43109 * 3 2 1 7 7 H 1.09000 * 109.47158 * 181.39251 * 6 3 2 8 8 O 1.42903 * 109.47091 * 301.38905 * 6 3 2 9 9 C 1.42894 * 113.99982 * 233.40537 * 8 6 3 10 10 C 1.50700 * 109.47687 * 61.39319 * 6 3 2 11 11 O 1.21290 * 119.99396 * 335.94981 * 10 6 3 12 12 N 1.34767 * 120.00536 * 155.94643 * 10 6 3 13 13 C 1.37138 * 120.00401 * 167.36198 * 12 10 6 14 14 H 1.07998 * 120.00610 * 128.05496 * 13 12 10 15 15 C 1.38897 * 119.99710 * 308.33150 * 13 12 10 16 16 N 1.31424 * 119.99977 * 77.89416 * 15 13 12 17 17 Si 1.86801 * 120.00035 * 257.89598 * 15 13 12 18 18 H 1.48504 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47208 * 119.99690 * 17 15 13 20 20 H 1.48496 * 109.46971 * 239.99887 * 17 15 13 21 21 C 1.39790 * 119.99897 * 347.36155 * 12 10 6 22 22 C 1.38958 * 120.07627 * 295.42314 * 21 12 10 23 23 C 1.38093 * 119.92085 * 179.76652 * 22 21 12 24 24 C 1.38308 * 120.07334 * 0.48610 * 23 22 21 25 25 C 1.38307 * 120.16118 * 359.76691 * 24 23 22 26 26 C 1.38082 * 120.07615 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47138 * 59.99791 * 1 2 3 28 28 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46455 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46455 * 239.99879 * 2 1 3 31 31 H 1.09002 * 109.47138 * 120.00209 * 2 1 3 32 32 H 1.08996 * 109.47382 * 166.82146 * 5 3 2 33 33 H 1.08997 * 109.47055 * 286.82969 * 5 3 2 34 34 H 1.09007 * 109.46623 * 46.82157 * 5 3 2 35 35 H 1.09001 * 109.47458 * 307.73183 * 9 8 6 36 36 H 1.09001 * 109.47817 * 67.73923 * 9 8 6 37 37 H 1.09005 * 109.46884 * 187.73984 * 9 8 6 38 38 H 0.96993 * 119.99787 * 184.96815 * 16 15 13 39 39 H 1.07997 * 120.04049 * 359.97438 * 22 21 12 40 40 H 1.07997 * 119.95884 * 180.23491 * 23 22 21 41 41 H 1.08003 * 119.91483 * 179.74579 * 24 23 22 42 42 H 1.07999 * 119.96176 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.03976 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7605 1.9267 -0.9357 5 6 1.4190 2.2031 1.1732 6 6 3.5636 1.4447 0.1400 7 1 3.9247 2.4728 0.1649 8 8 3.9317 0.7812 1.3510 9 6 4.7839 1.5521 2.2002 10 6 4.1771 0.7251 -1.0335 11 8 3.5294 -0.0968 -1.6467 12 7 5.4451 0.9950 -1.4015 13 6 6.0913 0.1729 -2.2888 14 1 6.5660 0.5902 -3.1646 15 6 6.1305 -1.1972 -2.0642 16 7 5.0784 -1.9375 -2.3328 17 14 7.6786 -1.9877 -1.3801 18 1 8.7130 -0.9443 -1.1637 19 1 7.3668 -2.6502 -0.0882 20 1 8.1866 -2.9967 -2.3439 21 6 6.1017 2.1129 -0.8789 22 6 5.6402 3.3908 -1.1700 23 6 6.2885 4.4928 -0.6480 24 6 7.4018 4.3258 0.1554 25 6 7.8671 3.0555 0.4430 26 6 7.2206 1.9490 -0.0712 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9485 3.1449 1.3168 33 1 0.3693 2.4052 0.9603 34 1 1.4966 1.6008 2.0785 35 1 5.6425 1.9054 1.6293 36 1 4.2310 2.4064 2.5910 37 1 5.1283 0.9326 3.0283 38 1 5.0796 -2.8813 -2.1092 39 1 4.7736 3.5220 -1.8009 40 1 5.9280 5.4862 -0.8707 41 1 7.9093 5.1896 0.5590 42 1 8.7370 2.9289 1.0703 43 1 7.5847 0.9573 0.1534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361631367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:17 Heat of formation + Delta-G solvation = -40.544034 kcal Electronic energy + Delta-G solvation = -25225.341748 eV Core-core repulsion = 21850.427666 eV Total energy + Delta-G solvation = -3374.914082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43691 -39.57556 -38.41771 -36.64915 -35.66963 -34.57902 -31.79611 -31.00057 -30.24999 -28.94729 -27.27578 -26.31872 -24.66312 -23.29968 -23.12077 -21.50412 -20.55472 -19.23068 -18.49883 -17.49774 -16.99899 -16.79005 -16.60932 -16.26140 -15.77847 -15.67735 -15.32380 -14.98930 -14.73126 -14.53455 -14.23387 -14.09694 -14.06212 -13.66983 -13.58341 -13.18703 -12.96590 -12.75377 -12.64319 -12.44321 -12.24637 -12.17906 -12.14627 -11.85746 -11.73448 -11.69060 -11.27715 -10.86536 -10.51791 -9.98184 -9.71486 -9.56105 -9.01298 -8.88469 -5.76493 0.53606 0.59706 1.16789 1.36912 1.47574 1.99984 2.14434 2.43632 2.93729 3.09148 3.31976 3.86632 3.94188 4.02126 4.17842 4.23429 4.27046 4.38657 4.40192 4.54125 4.57355 4.66135 4.69788 4.71489 4.75602 4.80844 4.82238 4.93902 5.05768 5.10640 5.14265 5.21011 5.25674 5.25969 5.39418 5.56874 5.63276 5.72009 5.81189 5.85381 6.12182 6.23551 6.33268 6.90831 7.25326 7.55872 8.08818 8.32613 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.009195 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.230617 B = 3044.412984 C = 4565.431782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.078 4.078 4 H 0.065 0.935 5 C -0.131 4.131 6 C 0.088 3.912 7 H 0.084 0.916 8 O -0.387 6.387 9 C 0.015 3.985 10 C 0.429 3.571 11 O -0.536 6.536 12 N -0.413 5.413 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.148 3.852 16 N -0.685 5.685 17 Si 0.841 3.159 18 H -0.254 1.254 19 H -0.278 1.278 20 H -0.271 1.271 21 C 0.144 3.856 22 C -0.169 4.169 23 C -0.096 4.096 24 C -0.137 4.137 25 C -0.103 4.103 26 C -0.145 4.145 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.277 0.723 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.146 0.854 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 11.934 10.325 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C -0.098 4.098 4 H 0.084 0.916 5 C -0.188 4.188 6 C 0.027 3.973 7 H 0.102 0.898 8 O -0.306 6.306 9 C -0.081 4.081 10 C 0.220 3.780 11 O -0.415 6.415 12 N -0.132 5.132 13 C -0.635 4.635 14 H 0.074 0.926 15 C -0.084 4.084 16 N -0.303 5.303 17 Si 0.659 3.341 18 H -0.177 1.177 19 H -0.203 1.203 20 H -0.196 1.196 21 C 0.052 3.948 22 C -0.189 4.189 23 C -0.114 4.114 24 C -0.155 4.155 25 C -0.122 4.122 26 C -0.165 4.165 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.626 11.095 9.902 14.960 hybrid contribution 1.022 -1.066 -0.321 1.511 sum -0.604 10.029 9.581 13.883 Atomic orbital electron populations 1.21751 0.94614 1.01323 1.01896 1.21705 0.96275 0.96227 1.02282 1.21162 0.91366 0.97550 0.99677 0.91642 1.21753 1.01040 0.99229 0.96803 1.22379 0.95977 0.95776 0.83172 0.89785 1.87918 1.68255 1.43914 1.30511 1.23192 0.93944 0.96803 0.94185 1.22062 0.81876 0.86418 0.87684 1.90499 1.58960 1.35620 1.56418 1.41027 1.08898 1.23546 1.39721 1.17621 1.47759 0.87632 1.10524 0.92628 1.26029 0.96156 0.96517 0.89723 1.71200 1.32815 1.07424 1.18818 0.87390 0.87730 0.79039 0.79974 1.17712 1.20349 1.19596 1.18516 0.94812 0.87876 0.93550 1.21357 1.02645 0.91987 1.02913 1.21274 0.95455 0.98152 0.96539 1.21406 0.97008 0.97436 0.99632 1.21305 0.99559 0.91898 0.99398 1.21260 0.97486 0.99277 0.98527 0.93018 0.93282 0.91183 0.91642 0.94114 0.92103 0.90661 0.92469 0.93555 0.91957 0.88888 0.91113 0.87516 0.82990 0.82480 0.83667 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.44 71.98 0.68 -3.54 16 2 C -0.13 -5.06 4.96 30.59 0.15 -4.90 16 3 C -0.08 -2.84 2.24 -10.80 -0.02 -2.86 16 4 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 5 C -0.13 -3.48 8.01 71.98 0.58 -2.90 16 6 C 0.09 3.58 1.75 29.85 0.05 3.64 16 7 H 0.08 3.11 5.23 -2.39 -0.01 3.09 16 8 O -0.39 -15.57 9.13 -148.98 -1.36 -16.93 16 9 C 0.01 0.45 10.73 113.37 1.22 1.66 16 10 C 0.43 22.38 6.58 87.66 0.58 22.96 16 11 O -0.54 -31.89 11.03 -3.06 -0.03 -31.92 16 12 N -0.41 -21.67 2.66 -458.89 -1.22 -22.89 16 13 C -0.52 -30.55 8.57 84.02 0.72 -29.83 16 14 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 15 C 0.15 8.39 4.93 84.91 0.42 8.81 16 16 N -0.69 -40.07 11.73 21.65 0.25 -39.82 16 17 Si 0.84 40.09 29.69 68.60 2.04 42.13 16 18 H -0.25 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.14 6.18 3.66 38.22 0.14 6.32 16 22 C -0.17 -6.01 8.10 22.41 0.18 -5.83 16 23 C -0.10 -2.49 10.04 22.25 0.22 -2.27 16 24 C -0.14 -3.18 10.04 22.30 0.22 -2.96 16 25 C -0.10 -2.88 9.97 22.25 0.22 -2.66 16 26 C -0.15 -5.58 7.71 22.41 0.17 -5.40 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.77 6.65 -2.38 -0.02 1.75 16 30 H 0.07 3.25 5.21 -2.38 -0.01 3.24 16 31 H 0.04 1.70 7.48 -2.39 -0.02 1.68 16 32 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 33 H 0.07 1.68 7.16 -2.39 -0.02 1.66 16 34 H 0.06 1.53 8.03 -2.38 -0.02 1.51 16 35 H 0.05 1.50 4.88 -2.39 -0.01 1.49 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.28 14.77 8.32 -92.71 -0.77 14.00 16 39 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.10 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -71.92 342.38 6.19 -65.73 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.99 Total: 23.46 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 5.53 Total: -19.77 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.97 Total: -62.71 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -1.39 Total: -48.85 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.04 Total: 42.13 kcal Total: -71.92 6.19 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361631367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.186 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds