Wall clock time and date at job start Tue Mar 31 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1 5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1 6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2 7 7 C 1.37879 * 119.99991 * 295.14989 * 5 3 2 8 8 N 1.31511 * 120.00126 * 352.97123 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 172.96798 * 7 5 3 10 10 H 1.48502 * 109.47100 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47351 * 300.00077 * 9 7 5 12 12 H 1.48497 * 109.47212 * 60.00352 * 9 7 5 13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1 14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2 15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3 16 16 C 1.38240 * 120.00086 * 269.72704 * 15 14 13 17 17 C 1.38226 * 120.00196 * 179.76575 * 16 15 14 18 18 C 1.38232 * 120.00134 * 0.48486 * 17 16 15 19 19 C 1.50696 * 120.00228 * 179.76969 * 18 17 16 20 20 O 1.43756 * 109.63372 * 118.92532 * 19 18 17 21 21 C 1.44580 * 104.91958 * 215.70953 * 20 19 18 22 22 C 1.54911 * 101.63766 * 36.27069 * 21 20 19 23 23 O 1.43369 * 109.63483 * 359.71332 * 19 18 17 24 24 C 1.38236 * 120.00034 * 359.78553 * 18 17 16 25 25 C 1.38232 * 120.00540 * 89.99895 * 15 14 13 26 26 H 1.09002 * 109.46673 * 305.53857 * 1 2 3 27 27 H 1.08997 * 109.47208 * 65.53992 * 1 2 3 28 28 H 1.09001 * 109.46937 * 185.53911 * 1 2 3 29 29 H 1.09009 * 109.47037 * 240.00466 * 2 1 3 30 30 H 1.08992 * 109.47619 * 120.00340 * 2 1 3 31 31 H 0.96996 * 120.00069 * 356.30728 * 8 7 5 32 32 H 1.00905 * 111.00328 * 209.25517 * 13 3 2 33 33 H 1.09003 * 109.47374 * 305.03471 * 14 13 3 34 34 H 1.08998 * 109.47277 * 65.03674 * 14 13 3 35 35 H 1.08009 * 119.99363 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.00427 * 180.24951 * 17 16 15 37 37 H 1.09000 * 109.63000 * 239.31721 * 19 18 17 38 38 H 1.09006 * 111.08886 * 278.15741 * 21 20 19 39 39 H 1.09000 * 110.97956 * 154.33261 * 21 20 19 40 40 H 1.08999 * 110.69382 * 205.95903 * 22 21 20 41 41 H 1.08997 * 110.84663 * 82.82227 * 22 21 20 42 42 H 1.07997 * 120.00207 * 179.97438 * 24 18 17 43 43 H 1.08007 * 119.99701 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1270 1.4436 -0.0800 5 6 1.4495 2.1841 -1.1715 6 1 0.7753 3.0108 -1.0030 7 6 1.7699 1.8071 -2.4585 8 7 2.6939 0.8945 -2.6656 9 14 0.8914 2.5926 -3.9078 10 1 1.4140 2.0184 -5.1737 11 1 -0.5657 2.3248 -3.8079 12 1 1.1274 4.0587 -3.8943 13 7 1.6402 2.1032 1.2496 14 6 2.6092 1.8344 2.3205 15 6 2.1050 2.4223 3.6133 16 6 2.4389 3.7182 3.9599 17 6 1.9725 4.2591 5.1434 18 6 1.1805 3.5008 5.9851 19 6 0.6763 4.0887 7.2778 20 8 -0.7611 4.1086 7.2713 21 6 -1.1198 5.3219 7.9709 22 6 -0.0026 6.2907 7.5092 23 8 1.1531 5.4339 7.4136 24 6 0.8512 2.2030 5.6413 25 6 1.3134 1.6639 4.4553 26 1 -0.3633 0.5974 0.8363 27 1 -0.3633 0.4255 -0.9354 28 1 -0.3633 -1.0229 0.0992 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.1875 0.5254 -1.9167 32 1 1.5198 3.0955 1.1116 33 1 2.7344 0.7577 2.4355 34 1 3.5676 2.2864 2.0652 35 1 3.0614 4.3092 3.3043 36 1 2.2300 5.2729 5.4123 37 1 1.0304 3.4883 8.1159 38 1 -1.0883 5.1760 9.0506 39 1 -2.1004 5.6787 7.6558 40 1 0.1586 7.0737 8.2502 41 1 -0.2421 6.7244 6.5384 42 1 0.2328 1.6104 6.2991 43 1 1.0565 0.6497 4.1868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405816057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:46 Heat of formation + Delta-G solvation = -69.886932 kcal Electronic energy + Delta-G solvation = -22945.036636 eV Core-core repulsion = 19568.850150 eV Total energy + Delta-G solvation = -3376.186485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80281 -38.95935 -36.47497 -35.33663 -33.57912 -31.73325 -30.75779 -30.61926 -29.36965 -26.64051 -24.91729 -23.69892 -23.46419 -23.01534 -22.35475 -20.55008 -19.26025 -17.72440 -17.39423 -17.02424 -16.33732 -15.55522 -15.22951 -14.98296 -14.55740 -14.26598 -14.10887 -13.73871 -13.69345 -13.44014 -13.20470 -13.02915 -12.86814 -12.51282 -12.13920 -11.97692 -11.82372 -11.53879 -11.16108 -10.97326 -10.79725 -10.74295 -10.55413 -10.12292 -10.08535 -9.99476 -9.87950 -9.67162 -8.74385 -8.62568 -8.43141 -8.30300 -7.37535 -6.35095 -4.05772 1.37709 1.59169 3.12882 3.43715 3.46271 3.63509 3.64281 3.95020 4.22095 4.50437 4.52688 4.65601 4.82752 4.94272 5.08872 5.10395 5.14336 5.20312 5.31150 5.36667 5.46863 5.54161 5.67163 5.69161 5.95061 6.01828 6.20567 6.25040 6.33201 6.47573 6.51891 6.56497 6.63797 6.83071 6.88959 6.98244 7.07030 7.14364 7.30259 7.48235 7.57883 7.87831 8.10487 8.51152 8.58534 8.87270 9.64315 11.01758 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.003063 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.855854 B = 9139.821214 C = 9433.500279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.092 3.908 15 C -0.053 4.053 16 C -0.121 4.121 17 C -0.089 4.089 18 C -0.129 4.129 19 C 0.280 3.720 20 O -0.370 6.370 21 C 0.016 3.984 22 C 0.020 3.980 23 O -0.379 6.379 24 C -0.094 4.094 25 C -0.104 4.104 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.270 0.730 32 H 0.335 0.665 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 7.628 21.406 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.632 4.632 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.304 5.304 14 C -0.037 4.037 15 C -0.053 4.053 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.129 4.129 19 C 0.186 3.814 20 O -0.290 6.290 21 C -0.061 4.061 22 C -0.057 4.057 23 O -0.300 6.300 24 C -0.113 4.113 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.679 6.969 19.821 21.525 hybrid contribution 0.746 0.665 1.490 1.794 sum -3.933 7.634 21.311 22.977 Atomic orbital electron populations 1.21419 0.96459 0.97473 1.02227 1.21478 0.96409 0.98203 0.98266 1.19252 0.93110 0.91782 0.86269 0.99048 1.21943 1.31077 1.18383 0.91825 0.92852 1.25691 0.96375 0.95925 1.00067 1.70790 1.21234 1.27023 1.35575 0.83616 0.75796 0.75501 0.75841 1.20878 1.21351 1.21574 1.60599 1.46101 1.16272 1.07383 1.20937 0.93648 0.99983 0.89154 1.20096 0.95828 0.93805 0.95611 1.21078 1.00948 0.95221 0.96743 1.20865 0.96893 0.99595 0.93396 1.19824 1.01473 0.95148 0.96492 1.22638 0.79187 0.84318 0.95277 1.89289 1.20315 1.42043 1.77351 1.24361 1.00228 0.83772 0.97720 1.24211 0.84714 0.94225 1.02516 1.88875 1.29812 1.16696 1.94642 1.20814 0.98941 0.94387 0.97114 1.20993 0.97324 1.00327 0.93600 0.92999 0.92487 0.96522 0.92389 0.96214 0.91850 0.84733 0.90949 0.95371 0.86132 0.85615 0.88924 0.90582 0.87248 0.88168 0.90388 0.86171 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.43 37.16 0.35 -2.31 16 2 C -0.10 -2.49 5.51 -26.73 -0.15 -2.64 16 3 C 0.20 5.03 1.93 -68.87 -0.13 4.90 16 4 H -0.01 -0.21 7.22 -51.93 -0.37 -0.59 16 5 C -0.59 -16.14 7.13 -34.44 -0.25 -16.39 16 6 H 0.05 1.46 7.67 -52.49 -0.40 1.06 16 7 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16 8 N -0.91 -26.86 12.94 55.43 0.72 -26.14 16 9 Si 1.06 24.96 29.91 -169.99 -5.08 19.88 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.67 -14.27 5.60 -109.23 -0.61 -14.89 16 14 C 0.09 1.67 5.58 -4.98 -0.03 1.64 16 15 C -0.05 -0.85 5.44 -104.62 -0.57 -1.42 16 16 C -0.12 -1.81 9.70 -39.58 -0.38 -2.20 16 17 C -0.09 -1.24 9.38 -39.59 -0.37 -1.62 16 18 C -0.13 -1.74 5.56 -104.63 -0.58 -2.32 16 19 C 0.28 3.21 4.31 36.00 0.16 3.37 16 20 O -0.37 -4.27 11.23 -59.05 -0.66 -4.93 16 21 C 0.02 0.11 7.95 38.17 0.30 0.42 16 22 C 0.02 0.15 8.07 38.17 0.31 0.46 16 23 O -0.38 -4.17 9.70 -59.05 -0.57 -4.74 16 24 C -0.09 -1.29 9.64 -39.58 -0.38 -1.67 16 25 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 26 H 0.05 1.14 7.59 -51.93 -0.39 0.75 16 27 H 0.06 1.39 7.31 -51.93 -0.38 1.01 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 1.50 6.35 -51.92 -0.33 1.17 16 30 H 0.02 0.42 7.33 -51.93 -0.38 0.04 16 31 H 0.27 7.96 6.03 -40.82 -0.25 7.71 16 32 H 0.34 7.20 8.29 -39.29 -0.33 6.88 16 33 H 0.07 1.31 7.24 -51.93 -0.38 0.94 16 34 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.13 1.60 7.01 -52.48 -0.37 1.24 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -30.70 348.46 -9.76 -40.46 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.60 Total: 6.26 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.20 Total: -21.15 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.11 Total: -41.02 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -1.24 Total: -9.67 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.70 -9.76 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405816057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.425 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds