Wall clock time and date at job start Tue Mar 31 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1 5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1 6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2 7 7 C 1.37879 * 119.99991 * 295.14989 * 5 3 2 8 8 N 1.31511 * 120.00126 * 352.97123 * 7 5 3 9 9 Si 1.86800 * 119.99925 * 172.96798 * 7 5 3 10 10 H 1.48502 * 109.47100 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47351 * 300.00077 * 9 7 5 12 12 H 1.48497 * 109.47212 * 60.00352 * 9 7 5 13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1 14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2 15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3 16 16 C 1.38240 * 120.00086 * 269.72704 * 15 14 13 17 17 C 1.38226 * 120.00196 * 179.76575 * 16 15 14 18 18 C 1.38232 * 120.00134 * 0.48486 * 17 16 15 19 19 C 1.50696 * 120.00228 * 179.76969 * 18 17 16 20 20 O 1.43756 * 109.63372 * 118.92532 * 19 18 17 21 21 C 1.44580 * 104.91958 * 215.70953 * 20 19 18 22 22 C 1.54911 * 101.63766 * 36.27069 * 21 20 19 23 23 O 1.43369 * 109.63483 * 359.71332 * 19 18 17 24 24 C 1.38236 * 120.00034 * 359.78553 * 18 17 16 25 25 C 1.38232 * 120.00540 * 89.99895 * 15 14 13 26 26 H 1.09002 * 109.46673 * 305.53857 * 1 2 3 27 27 H 1.08997 * 109.47208 * 65.53992 * 1 2 3 28 28 H 1.09001 * 109.46937 * 185.53911 * 1 2 3 29 29 H 1.09009 * 109.47037 * 240.00466 * 2 1 3 30 30 H 1.08992 * 109.47619 * 120.00340 * 2 1 3 31 31 H 0.96996 * 120.00069 * 356.30728 * 8 7 5 32 32 H 1.00905 * 111.00328 * 209.25517 * 13 3 2 33 33 H 1.09003 * 109.47374 * 305.03471 * 14 13 3 34 34 H 1.08998 * 109.47277 * 65.03674 * 14 13 3 35 35 H 1.08009 * 119.99363 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.00427 * 180.24951 * 17 16 15 37 37 H 1.09000 * 109.63000 * 239.31721 * 19 18 17 38 38 H 1.09006 * 111.08886 * 278.15741 * 21 20 19 39 39 H 1.09000 * 110.97956 * 154.33261 * 21 20 19 40 40 H 1.08999 * 110.69382 * 205.95903 * 22 21 20 41 41 H 1.08997 * 110.84663 * 82.82227 * 22 21 20 42 42 H 1.07997 * 120.00207 * 179.97438 * 24 18 17 43 43 H 1.08007 * 119.99701 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1270 1.4436 -0.0800 5 6 1.4495 2.1841 -1.1715 6 1 0.7753 3.0108 -1.0030 7 6 1.7699 1.8071 -2.4585 8 7 2.6939 0.8945 -2.6656 9 14 0.8914 2.5926 -3.9078 10 1 1.4140 2.0184 -5.1737 11 1 -0.5657 2.3248 -3.8079 12 1 1.1274 4.0587 -3.8943 13 7 1.6402 2.1032 1.2496 14 6 2.6092 1.8344 2.3205 15 6 2.1050 2.4223 3.6133 16 6 2.4389 3.7182 3.9599 17 6 1.9725 4.2591 5.1434 18 6 1.1805 3.5008 5.9851 19 6 0.6763 4.0887 7.2778 20 8 -0.7611 4.1086 7.2713 21 6 -1.1198 5.3219 7.9709 22 6 -0.0026 6.2907 7.5092 23 8 1.1531 5.4339 7.4136 24 6 0.8512 2.2030 5.6413 25 6 1.3134 1.6639 4.4553 26 1 -0.3633 0.5974 0.8363 27 1 -0.3633 0.4255 -0.9354 28 1 -0.3633 -1.0229 0.0992 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.1875 0.5254 -1.9167 32 1 1.5198 3.0955 1.1116 33 1 2.7344 0.7577 2.4355 34 1 3.5676 2.2864 2.0652 35 1 3.0614 4.3092 3.3043 36 1 2.2300 5.2729 5.4123 37 1 1.0304 3.4883 8.1159 38 1 -1.0883 5.1760 9.0506 39 1 -2.1004 5.6787 7.6558 40 1 0.1586 7.0737 8.2502 41 1 -0.2421 6.7244 6.5384 42 1 0.2328 1.6104 6.2991 43 1 1.0565 0.6497 4.1868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405816057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:46 Heat of formation + Delta-G solvation = -88.349351 kcal Electronic energy + Delta-G solvation = -22945.837226 eV Core-core repulsion = 19568.850150 eV Total energy + Delta-G solvation = -3376.987076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59690 -40.08418 -38.27146 -36.09876 -35.18489 -33.34277 -32.15854 -31.86455 -30.37100 -28.18765 -26.45288 -25.39855 -24.39517 -24.26743 -23.40782 -21.75789 -21.16840 -19.05455 -18.47006 -18.16035 -17.15249 -16.68328 -16.47811 -16.10079 -16.06786 -15.63231 -15.54285 -15.38118 -15.07842 -14.51016 -14.28245 -14.22520 -13.96919 -13.79345 -13.70482 -13.44216 -13.16268 -13.09214 -12.62261 -12.48048 -12.28624 -12.07659 -11.95865 -11.85146 -11.73265 -11.56823 -11.18962 -10.80179 -10.59943 -10.42906 -9.86458 -9.67760 -9.14989 -8.57210 -6.28231 0.24179 0.46780 1.54198 1.61096 1.80026 2.41425 2.57719 2.72445 2.97842 3.21860 3.59386 3.66551 3.77913 3.86864 3.98743 4.08305 4.11544 4.22731 4.24483 4.38507 4.43365 4.51997 4.55858 4.59752 4.63418 4.71204 4.75893 4.80443 4.93483 4.99384 5.03870 5.12753 5.19261 5.37332 5.43435 5.50840 5.52778 5.68285 5.70399 5.88594 6.01276 6.03934 6.08957 6.47475 6.59228 6.78800 7.49976 8.79797 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.003063 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.855854 B = 9139.821214 C = 9433.500279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.208 3.792 4 H -0.039 1.039 5 C -0.599 4.599 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.934 5.934 9 Si 1.107 2.893 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.099 3.901 15 C -0.071 4.071 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.129 4.129 19 C 0.282 3.718 20 O -0.393 6.393 21 C 0.012 3.988 22 C 0.014 3.986 23 O -0.395 6.395 24 C -0.095 4.095 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 8.636 23.246 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.099 3.901 4 H -0.022 1.022 5 C -0.637 4.637 6 H 0.067 0.933 7 C -0.222 4.222 8 N -0.572 5.572 9 Si 0.930 3.070 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.198 1.198 13 N -0.298 5.298 14 C -0.030 4.030 15 C -0.071 4.071 16 C -0.146 4.146 17 C -0.110 4.110 18 C -0.130 4.130 19 C 0.187 3.813 20 O -0.314 6.314 21 C -0.063 4.063 22 C -0.062 4.062 23 O -0.316 6.316 24 C -0.113 4.113 25 C -0.129 4.129 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.158 0.842 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.189 7.990 21.697 23.936 hybrid contribution 1.203 0.417 1.055 1.653 sum -4.986 8.407 22.752 24.763 Atomic orbital electron populations 1.21296 0.95152 0.98986 1.01048 1.21375 0.97428 0.97281 0.97795 1.19091 0.91071 0.92629 0.87303 1.02157 1.22213 1.30454 1.18193 0.92837 0.93305 1.26991 0.96341 0.95787 1.03036 1.70901 1.22602 1.28595 1.35095 0.83048 0.75502 0.75604 0.72820 1.21251 1.19827 1.19791 1.60552 1.46958 1.15783 1.06486 1.20869 0.92837 1.00015 0.89291 1.19906 0.97549 0.94623 0.95037 1.21169 1.01124 0.94899 0.97391 1.21005 0.96855 1.00159 0.93028 1.20209 1.00454 0.95071 0.97244 1.22653 0.79462 0.84850 0.94362 1.89254 1.20085 1.43824 1.78234 1.24643 1.00808 0.82147 0.98701 1.24451 0.83959 0.94497 1.03303 1.88860 1.31286 1.16851 1.94624 1.21024 0.98744 0.94740 0.96768 1.21103 0.97243 1.00506 0.94086 0.92629 0.94746 0.93953 0.94942 0.94507 0.93129 0.85057 0.91128 0.95878 0.85822 0.84578 0.87326 0.88503 0.85575 0.85363 0.90847 0.84192 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.43 71.98 0.68 -4.07 16 2 C -0.10 -4.78 5.51 30.59 0.17 -4.62 16 3 C 0.21 10.47 1.93 44.17 0.09 10.55 16 4 H -0.04 -2.18 7.22 -2.39 -0.02 -2.19 16 5 C -0.60 -32.94 7.13 25.60 0.18 -32.75 16 6 H 0.05 2.68 7.67 -2.91 -0.02 2.66 16 7 C -0.02 -1.27 5.26 84.66 0.45 -0.82 16 8 N -0.93 -56.36 12.94 21.45 0.28 -56.08 16 9 Si 1.11 50.16 29.91 68.60 2.05 52.21 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.67 -28.57 5.60 -499.48 -2.80 -31.37 16 14 C 0.10 3.63 5.58 85.56 0.48 4.10 16 15 C -0.07 -2.25 5.44 -19.87 -0.11 -2.36 16 16 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 17 C -0.09 -2.47 9.38 22.27 0.21 -2.26 16 18 C -0.13 -3.28 5.56 -19.87 -0.11 -3.39 16 19 C 0.28 5.83 4.31 71.23 0.31 6.13 16 20 O -0.39 -8.14 11.23 -126.20 -1.42 -9.56 16 21 C 0.01 0.15 7.95 72.64 0.58 0.72 16 22 C 0.01 0.17 8.07 72.64 0.59 0.76 16 23 O -0.39 -7.81 9.70 -126.20 -1.22 -9.03 16 24 C -0.09 -2.44 9.64 22.27 0.21 -2.22 16 25 C -0.11 -3.24 9.70 22.27 0.22 -3.02 16 26 H 0.05 2.39 7.59 -2.39 -0.02 2.37 16 27 H 0.03 1.64 7.31 -2.39 -0.02 1.63 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.70 6.35 -2.38 -0.02 1.69 16 30 H 0.04 1.60 7.33 -2.39 -0.02 1.58 16 31 H 0.26 15.79 6.03 -92.71 -0.56 15.24 16 32 H 0.33 14.44 8.29 -89.69 -0.74 13.69 16 33 H 0.07 2.58 7.24 -2.39 -0.02 2.57 16 34 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.14 3.30 7.01 -2.91 -0.02 3.28 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -65.98 348.46 1.50 -64.48 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.47 Total: 26.13 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 4.15 Total: -36.78 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.52 Total: -87.45 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -2.64 Total: -18.59 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -65.98 1.50 -64.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405816057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.873 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds