Wall clock time and date at job start Tue Mar 31 2020 07:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 H 1.09007 * 109.47234 * 174.08610 * 3 2 1 5 5 C 1.50703 * 109.47218 * 54.09309 * 3 2 1 6 6 H 1.08001 * 119.99396 * 240.00363 * 5 3 2 7 7 C 1.37868 * 120.00444 * 59.99543 * 5 3 2 8 8 N 1.31522 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00297 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46990 * 59.99973 * 9 7 5 11 11 H 1.48494 * 109.47477 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46956 * 300.00366 * 9 7 5 13 13 N 1.46889 * 109.47285 * 294.08540 * 3 2 1 14 14 C 1.46896 * 111.00313 * 275.74503 * 13 3 2 15 15 C 1.50706 * 109.47467 * 176.25477 * 14 13 3 16 16 C 1.38232 * 119.99614 * 89.99784 * 15 14 13 17 17 C 1.38235 * 119.99959 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.99931 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00265 * 180.02562 * 18 17 16 20 20 O 1.44386 * 110.16460 * 62.32479 * 19 18 17 21 21 C 1.44837 * 103.22938 * 158.43117 * 20 19 18 22 22 C 1.54448 * 102.89757 * 323.39023 * 21 20 19 23 23 O 1.43778 * 110.11470 * 179.10325 * 19 18 17 24 24 C 1.38233 * 119.99945 * 0.27048 * 18 17 16 25 25 C 1.38228 * 120.00185 * 269.98118 * 15 14 13 26 26 H 1.08997 * 109.46875 * 58.55249 * 1 2 3 27 27 H 1.08994 * 109.47226 * 178.55874 * 1 2 3 28 28 H 1.09002 * 109.46776 * 298.55743 * 1 2 3 29 29 H 1.09002 * 109.47377 * 239.99834 * 2 1 3 30 30 H 1.09005 * 109.47123 * 120.00077 * 2 1 3 31 31 H 0.97003 * 119.99863 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00080 * 39.70130 * 13 3 2 33 33 H 1.09006 * 109.47285 * 56.25693 * 14 13 3 34 34 H 1.08995 * 109.47362 * 296.25515 * 14 13 3 35 35 H 1.08001 * 120.00338 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.00241 * 180.02562 * 17 16 15 37 37 H 1.09005 * 110.08762 * 300.70430 * 19 18 17 38 38 H 1.08998 * 110.72937 * 205.03552 * 21 20 19 39 39 H 1.09006 * 110.88463 * 81.81493 * 21 20 19 40 40 H 1.08998 * 110.32008 * 262.89044 * 22 21 20 41 41 H 1.09007 * 110.40713 * 140.74466 * 22 21 20 42 42 H 1.08004 * 120.00089 * 179.72471 * 24 18 17 43 43 H 1.08003 * 120.00389 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8641 2.6977 3.8713 10 1 -0.6140 2.6947 3.7269 11 1 1.2373 2.0403 5.1494 12 1 1.3586 4.0980 3.8714 13 7 1.6704 2.0926 -1.2643 14 6 2.6516 1.7945 -2.3161 15 6 2.1926 2.4001 -3.6176 16 6 2.5699 3.6872 -3.9520 17 6 2.1493 4.2425 -5.1461 18 6 1.3520 3.5105 -6.0058 19 6 0.8940 4.1156 -7.3078 20 8 2.0318 4.4176 -8.1438 21 6 1.4604 4.4740 -9.4735 22 6 0.3903 3.3608 -9.4364 23 8 0.0987 3.1681 -8.0407 24 6 0.9705 2.2252 -5.6690 25 6 1.3947 1.6683 -4.4770 26 1 -0.3633 0.5361 -0.8767 27 1 -0.3633 -1.0273 -0.0258 28 1 -0.3633 0.4913 0.9027 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.5171 0.4029 3.5856 32 1 0.7407 1.8244 -1.5506 33 1 2.7447 0.7145 -2.4307 34 1 3.6186 2.2153 -2.0407 35 1 3.1932 4.2590 -3.2805 36 1 2.4444 5.2479 -5.4076 37 1 0.3178 5.0211 -7.1176 38 1 2.2167 4.2571 -10.2279 39 1 1.0008 5.4450 -9.6581 40 1 0.7845 2.4423 -9.8711 41 1 -0.5059 3.6772 -9.9703 42 1 0.3439 1.6549 -6.3387 43 1 1.1004 0.6625 -4.2160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405816058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:49 Heat of formation + Delta-G solvation = -65.323119 kcal Electronic energy + Delta-G solvation = -22808.480256 eV Core-core repulsion = 19432.491673 eV Total energy + Delta-G solvation = -3375.988584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73334 -38.97385 -36.44439 -35.28892 -33.41678 -31.77571 -30.73313 -30.51963 -29.21129 -26.78467 -25.32216 -23.61854 -23.35803 -22.98000 -22.28937 -20.52645 -19.25467 -17.63530 -17.35355 -16.35881 -16.28785 -15.64227 -15.27355 -14.94523 -14.68964 -14.59622 -14.23794 -13.79816 -13.54619 -13.22680 -12.93142 -12.83528 -12.73424 -12.43715 -12.24676 -12.08231 -11.80384 -11.56944 -11.16669 -10.85156 -10.78337 -10.67041 -10.57720 -10.49445 -10.07307 -9.94939 -9.78221 -9.53069 -8.97397 -8.71663 -8.48844 -8.31930 -7.18588 -5.95084 -3.96567 1.39400 1.62094 3.22091 3.36228 3.40366 3.43877 3.56731 3.97231 4.20996 4.42494 4.47349 4.59877 4.89429 4.92289 5.05805 5.09462 5.19802 5.23773 5.28351 5.36573 5.55538 5.61430 5.71972 5.76672 6.02122 6.07046 6.28558 6.32266 6.36928 6.39940 6.48910 6.58444 6.61081 6.78175 6.91570 6.94145 7.16361 7.29428 7.31057 7.52814 7.72029 7.91209 8.30183 8.56383 8.64326 9.08856 9.66960 11.12009 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.002828 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.655591 B = 9897.862603 C =10138.645909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.092 3.908 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.094 4.094 18 C -0.117 4.117 19 C 0.278 3.722 20 O -0.367 6.367 21 C 0.013 3.987 22 C 0.020 3.980 23 O -0.378 6.378 24 C -0.087 4.087 25 C -0.122 4.122 26 H 0.029 0.971 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.011 0.989 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.328 0.672 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 4.778 -22.929 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.037 4.037 15 C -0.055 4.055 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.118 4.118 19 C 0.184 3.816 20 O -0.287 6.287 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.300 6.300 24 C -0.105 4.105 25 C -0.141 4.141 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.861 5.156 -22.419 23.079 hybrid contribution -0.692 -0.399 0.412 0.899 sum -2.553 4.757 -22.007 22.659 Atomic orbital electron populations 1.21563 0.97655 0.97976 1.01297 1.22109 0.95062 1.01158 1.00195 1.19225 0.96121 0.88651 0.85277 0.94877 1.21021 1.30480 1.11510 0.89712 0.92081 1.24906 0.95585 0.95187 0.98674 1.69880 1.39249 1.24148 1.20395 0.86627 0.79622 0.80028 0.81502 1.20395 1.21539 1.20341 1.60953 1.03800 1.63123 1.02962 1.20949 0.97469 0.96889 0.88419 1.20175 0.95560 0.94175 0.95597 1.21021 1.00281 0.94925 0.95909 1.20804 0.97042 0.99582 0.93840 1.19402 1.02054 0.95822 0.94479 1.22889 0.80994 0.90064 0.87690 1.89554 1.31063 1.91264 1.16824 1.24252 0.96878 0.98833 0.86471 1.23960 0.98696 0.99540 0.83444 1.88906 1.64700 1.59500 1.16846 1.20862 0.98996 0.94057 0.96563 1.21084 0.98549 1.00170 0.94280 0.95172 0.95913 0.91521 0.97074 0.88946 0.93085 0.85395 0.95252 0.90853 0.85445 0.86128 0.89670 0.87473 0.90663 0.89835 0.89764 0.85512 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.40 16 2 C -0.15 -3.41 5.50 -26.73 -0.15 -3.56 16 3 C 0.21 5.30 2.33 -68.87 -0.16 5.14 16 4 H 0.03 0.90 7.86 -51.92 -0.41 0.50 16 5 C -0.49 -13.25 7.35 -34.44 -0.25 -13.50 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.34 11.39 55.43 0.63 -24.71 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.43 6.24 -109.22 -0.68 -15.11 16 14 C 0.09 1.68 5.61 -4.98 -0.03 1.65 16 15 C -0.05 -0.88 5.35 -104.63 -0.56 -1.44 16 16 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 17 C -0.09 -1.29 9.67 -39.58 -0.38 -1.68 16 18 C -0.12 -1.60 5.58 -104.62 -0.58 -2.18 16 19 C 0.28 3.22 4.18 36.01 0.15 3.37 16 20 O -0.37 -4.16 11.45 -59.28 -0.68 -4.84 16 21 C 0.01 0.09 7.81 37.92 0.30 0.38 16 22 C 0.02 0.15 8.08 37.92 0.31 0.45 16 23 O -0.38 -4.27 9.79 -59.28 -0.58 -4.85 16 24 C -0.09 -1.22 9.39 -39.58 -0.37 -1.59 16 25 C -0.12 -1.83 9.70 -39.59 -0.38 -2.21 16 26 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.58 7.05 -51.93 -0.37 1.21 16 29 H 0.01 0.23 7.24 -51.93 -0.38 -0.14 16 30 H 0.09 2.43 6.25 -51.93 -0.32 2.10 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.33 6.80 6.55 -39.29 -0.26 6.54 16 33 H 0.03 0.54 7.18 -51.93 -0.37 0.16 16 34 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 1.65 7.04 -52.48 -0.37 1.28 16 43 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -29.79 347.40 -9.92 -39.71 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.58 Total: 6.19 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.25 Total: -18.03 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.05 Total: -39.82 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -1.26 Total: -9.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.79 -9.92 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405816058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds