Wall clock time and date at job start Tue Mar 31 2020 07:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 H 1.09007 * 109.47234 * 174.08610 * 3 2 1 5 5 C 1.50703 * 109.47218 * 54.09309 * 3 2 1 6 6 H 1.08001 * 119.99396 * 240.00363 * 5 3 2 7 7 C 1.37868 * 120.00444 * 59.99543 * 5 3 2 8 8 N 1.31522 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00297 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46990 * 59.99973 * 9 7 5 11 11 H 1.48494 * 109.47477 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46956 * 300.00366 * 9 7 5 13 13 N 1.46889 * 109.47285 * 294.08540 * 3 2 1 14 14 C 1.46896 * 111.00313 * 275.74503 * 13 3 2 15 15 C 1.50706 * 109.47467 * 176.25477 * 14 13 3 16 16 C 1.38232 * 119.99614 * 89.99784 * 15 14 13 17 17 C 1.38235 * 119.99959 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.99931 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00265 * 180.02562 * 18 17 16 20 20 O 1.44386 * 110.16460 * 62.32479 * 19 18 17 21 21 C 1.44837 * 103.22938 * 158.43117 * 20 19 18 22 22 C 1.54448 * 102.89757 * 323.39023 * 21 20 19 23 23 O 1.43778 * 110.11470 * 179.10325 * 19 18 17 24 24 C 1.38233 * 119.99945 * 0.27048 * 18 17 16 25 25 C 1.38228 * 120.00185 * 269.98118 * 15 14 13 26 26 H 1.08997 * 109.46875 * 58.55249 * 1 2 3 27 27 H 1.08994 * 109.47226 * 178.55874 * 1 2 3 28 28 H 1.09002 * 109.46776 * 298.55743 * 1 2 3 29 29 H 1.09002 * 109.47377 * 239.99834 * 2 1 3 30 30 H 1.09005 * 109.47123 * 120.00077 * 2 1 3 31 31 H 0.97003 * 119.99863 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00080 * 39.70130 * 13 3 2 33 33 H 1.09006 * 109.47285 * 56.25693 * 14 13 3 34 34 H 1.08995 * 109.47362 * 296.25515 * 14 13 3 35 35 H 1.08001 * 120.00338 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.00241 * 180.02562 * 17 16 15 37 37 H 1.09005 * 110.08762 * 300.70430 * 19 18 17 38 38 H 1.08998 * 110.72937 * 205.03552 * 21 20 19 39 39 H 1.09006 * 110.88463 * 81.81493 * 21 20 19 40 40 H 1.08998 * 110.32008 * 262.89044 * 22 21 20 41 41 H 1.09007 * 110.40713 * 140.74466 * 22 21 20 42 42 H 1.08004 * 120.00089 * 179.72471 * 24 18 17 43 43 H 1.08003 * 120.00389 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8641 2.6977 3.8713 10 1 -0.6140 2.6947 3.7269 11 1 1.2373 2.0403 5.1494 12 1 1.3586 4.0980 3.8714 13 7 1.6704 2.0926 -1.2643 14 6 2.6516 1.7945 -2.3161 15 6 2.1926 2.4001 -3.6176 16 6 2.5699 3.6872 -3.9520 17 6 2.1493 4.2425 -5.1461 18 6 1.3520 3.5105 -6.0058 19 6 0.8940 4.1156 -7.3078 20 8 2.0318 4.4176 -8.1438 21 6 1.4604 4.4740 -9.4735 22 6 0.3903 3.3608 -9.4364 23 8 0.0987 3.1681 -8.0407 24 6 0.9705 2.2252 -5.6690 25 6 1.3947 1.6683 -4.4770 26 1 -0.3633 0.5361 -0.8767 27 1 -0.3633 -1.0273 -0.0258 28 1 -0.3633 0.4913 0.9027 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.5171 0.4029 3.5856 32 1 0.7407 1.8244 -1.5506 33 1 2.7447 0.7145 -2.4307 34 1 3.6186 2.2153 -2.0407 35 1 3.1932 4.2590 -3.2805 36 1 2.4444 5.2479 -5.4076 37 1 0.3178 5.0211 -7.1176 38 1 2.2167 4.2571 -10.2279 39 1 1.0008 5.4450 -9.6581 40 1 0.7845 2.4423 -9.8711 41 1 -0.5059 3.6772 -9.9703 42 1 0.3439 1.6549 -6.3387 43 1 1.1004 0.6625 -4.2160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405816058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:48 Heat of formation + Delta-G solvation = -83.228347 kcal Electronic energy + Delta-G solvation = -22809.256685 eV Core-core repulsion = 19432.491673 eV Total energy + Delta-G solvation = -3376.765013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51257 -40.09349 -38.18978 -36.03799 -34.98726 -33.42829 -31.90183 -31.84577 -30.24819 -28.46251 -26.74389 -25.15713 -24.36693 -24.22951 -23.29734 -21.69715 -21.15692 -18.51165 -18.20747 -18.05833 -17.05590 -16.90112 -16.65580 -16.42954 -15.99226 -15.67540 -15.46862 -15.21436 -14.70544 -14.52823 -14.31591 -14.20784 -13.87088 -13.73873 -13.56707 -13.42362 -13.13150 -12.84149 -12.72827 -12.50825 -12.44797 -12.20726 -11.93648 -11.80812 -11.63323 -11.40372 -11.20536 -10.98394 -10.80713 -10.42140 -9.83592 -9.67047 -8.92120 -8.04475 -6.12965 0.26191 0.49760 1.44797 1.45482 1.53084 2.45649 2.51392 2.71428 2.96204 3.24296 3.64371 3.73431 3.83009 3.91090 4.01970 4.08594 4.13635 4.18508 4.37453 4.45871 4.53529 4.56907 4.59326 4.61932 4.69497 4.76365 4.79695 4.84547 4.98503 5.03509 5.11334 5.16594 5.35719 5.41898 5.47159 5.52550 5.68788 5.73721 5.75519 5.84437 5.97358 6.03733 6.32177 6.67722 6.83177 6.99056 7.54672 9.00811 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.002828 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.655591 B = 9897.862603 C =10138.645909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.099 3.901 15 C -0.072 4.072 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.119 4.119 19 C 0.279 3.721 20 O -0.390 6.390 21 C 0.009 3.991 22 C 0.014 3.986 23 O -0.400 6.400 24 C -0.090 4.090 25 C -0.125 4.125 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 5.601 -24.899 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.030 4.030 15 C -0.073 4.073 16 C -0.130 4.130 17 C -0.113 4.113 18 C -0.119 4.119 19 C 0.184 3.816 20 O -0.311 6.311 21 C -0.067 4.067 22 C -0.062 4.062 23 O -0.321 6.321 24 C -0.108 4.108 25 C -0.144 4.144 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.155 0.845 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.028 5.984 -24.418 25.322 hybrid contribution -0.304 -0.636 0.867 1.118 sum -3.332 5.348 -23.550 24.379 Atomic orbital electron populations 1.21445 0.95959 0.99346 1.00818 1.21954 0.96498 0.99979 0.99410 1.18974 0.93807 0.89552 0.86436 0.98319 1.21239 1.30424 1.11418 0.90903 0.93034 1.25584 0.95986 0.95916 1.00916 1.70010 1.40158 1.25238 1.20725 0.85715 0.79062 0.78780 0.78678 1.19691 1.21218 1.20129 1.60808 1.04646 1.62894 1.02762 1.20851 0.96380 0.97035 0.88722 1.19988 0.97311 0.94980 0.94998 1.21126 1.00531 0.94689 0.96701 1.21001 0.96644 1.00469 0.93137 1.19780 1.00996 0.95610 0.95537 1.22879 0.81311 0.90419 0.86951 1.89519 1.31540 1.91351 1.18715 1.24539 0.97368 0.99817 0.84948 1.24226 1.00024 1.00198 0.81787 1.88876 1.64680 1.59771 1.18788 1.21008 0.99045 0.94496 0.96287 1.21178 0.98263 1.00475 0.94462 0.93444 0.93729 0.93967 0.95512 0.91956 0.93185 0.84917 0.95237 0.91716 0.85420 0.84149 0.88149 0.85628 0.88609 0.89250 0.87382 0.84520 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.39 71.98 0.68 -4.32 16 2 C -0.14 -6.55 5.50 30.59 0.17 -6.38 16 3 C 0.22 11.14 2.33 44.17 0.10 11.24 16 4 H 0.00 -0.06 7.86 -2.38 -0.02 -0.08 16 5 C -0.50 -27.60 7.35 25.60 0.19 -27.41 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.78 5.22 84.65 0.44 1.22 16 8 N -0.92 -52.99 11.39 21.45 0.24 -52.75 16 9 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -29.22 6.24 -499.47 -3.12 -32.34 16 14 C 0.10 3.66 5.61 85.56 0.48 4.14 16 15 C -0.07 -2.32 5.35 -19.87 -0.11 -2.42 16 16 C -0.11 -3.33 9.70 22.27 0.22 -3.12 16 17 C -0.09 -2.46 9.67 22.27 0.22 -2.25 16 18 C -0.12 -3.06 5.58 -19.87 -0.11 -3.17 16 19 C 0.28 5.86 4.18 71.24 0.30 6.16 16 20 O -0.39 -7.98 11.45 -125.98 -1.44 -9.42 16 21 C 0.01 0.10 7.81 72.47 0.57 0.67 16 22 C 0.01 0.16 8.08 72.47 0.59 0.75 16 23 O -0.40 -8.15 9.79 -125.98 -1.23 -9.38 16 24 C -0.09 -2.43 9.39 22.27 0.21 -2.22 16 25 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16 26 H 0.05 1.81 6.42 -2.39 -0.02 1.79 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.97 7.05 -2.39 -0.02 1.96 16 29 H 0.03 1.14 7.24 -2.39 -0.02 1.13 16 30 H 0.06 3.34 6.25 -2.38 -0.01 3.32 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.33 13.66 6.55 -89.69 -0.59 13.07 16 33 H 0.03 1.08 7.18 -2.38 -0.02 1.06 16 34 H 0.06 2.46 8.07 -2.39 -0.02 2.44 16 35 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.10 1.78 8.14 -2.38 -0.02 1.77 16 38 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.14 3.35 7.04 -2.91 -0.02 3.33 16 43 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -64.08 347.40 1.04 -63.05 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.41 Total: 25.17 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.15 Total: -30.54 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.87 Total: -85.08 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -2.68 Total: -18.80 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.08 1.04 -63.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405816058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.183 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds