Wall clock time and date at job start Tue Mar 31 2020 07:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.50701 * 120.00112 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.46878 * 0.02562 * 4 2 1 6 6 C 1.35995 * 116.99587 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.07439 * 359.72507 * 6 5 4 8 8 C 1.38248 * 119.99552 * 179.74455 * 7 6 5 9 9 C 1.50700 * 119.92374 * 180.25225 * 8 7 6 10 10 N 1.46898 * 109.47526 * 270.25810 * 9 8 7 11 11 C 1.46898 * 111.00059 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46998 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00040 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47028 * 60.00025 * 16 14 12 18 18 H 1.48501 * 109.47375 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47467 * 300.00153 * 16 14 12 20 20 C 1.38246 * 120.14817 * 0.50974 * 8 7 6 21 21 C 1.38242 * 120.14884 * 359.76851 * 20 8 7 22 22 C 1.38565 * 119.99815 * 359.97438 * 21 20 8 23 23 O 1.35996 * 120.07637 * 179.97438 * 22 21 20 24 24 C 1.42898 * 116.99713 * 0.02562 * 23 22 21 25 25 H 1.07994 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99900 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46709 * 269.99678 * 3 2 1 28 28 H 1.08994 * 109.47494 * 29.99540 * 3 2 1 29 29 H 1.09004 * 109.47456 * 150.00318 * 3 2 1 30 30 H 1.09002 * 109.47060 * 120.00135 * 4 2 1 31 31 H 1.09001 * 109.47380 * 240.00223 * 4 2 1 32 32 H 1.07994 * 119.99980 * 359.97438 * 7 6 5 33 33 H 1.09000 * 109.47412 * 30.25759 * 9 8 7 34 34 H 1.09000 * 109.47112 * 150.25577 * 9 8 7 35 35 H 1.00896 * 111.00258 * 56.04187 * 10 9 8 36 36 H 1.08995 * 109.46978 * 299.99581 * 11 10 9 37 37 H 1.08996 * 109.47050 * 59.99907 * 11 10 9 38 38 H 0.97005 * 119.99982 * 179.97438 * 15 14 12 39 39 H 1.08004 * 119.92680 * 179.74146 * 20 8 7 40 40 H 1.07997 * 120.00411 * 179.97438 * 21 20 8 41 41 H 1.09000 * 109.47236 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.47392 * 300.00389 * 24 23 22 43 43 H 1.09002 * 109.46922 * 59.99615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6547 -3.6479 0.0015 7 6 3.0282 -3.8312 -0.0032 8 6 3.5549 -5.1094 0.0032 9 6 5.0489 -5.3068 0.0039 10 7 5.5350 -5.3718 -1.3808 11 6 6.9907 -5.5648 -1.4193 12 6 7.4515 -5.6272 -2.8528 13 1 6.7346 -5.5324 -3.6550 14 6 8.7883 -5.8041 -3.1402 15 7 9.6613 -5.9190 -2.1633 16 14 9.3593 -5.8821 -4.9170 17 1 9.0091 -4.6138 -5.6056 18 1 10.8310 -6.0771 -4.9560 19 1 8.6917 -7.0179 -5.6022 20 6 2.7142 -6.2068 0.0036 21 6 1.3430 -6.0310 0.0025 22 6 0.8084 -4.7526 0.0014 23 8 -0.5402 -4.5778 -0.0002 24 6 -1.3472 -5.7572 -0.0002 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.2451 1.6197 -1.0277 28 1 1.4744 2.0648 0.5137 29 1 3.0159 1.1748 0.5138 30 1 2.6902 -1.3632 -0.8894 31 1 2.6902 -1.3625 0.8906 32 1 3.6871 -2.9756 -0.0080 33 1 5.5256 -4.4718 0.5173 34 1 5.2924 -6.2364 0.5184 35 1 5.2653 -4.5484 -1.8978 36 1 7.4811 -4.7319 -0.9156 37 1 7.2472 -6.4964 -0.9148 38 1 10.6018 -6.0438 -2.3655 39 1 3.1296 -7.2038 0.0044 40 1 0.6884 -6.8900 0.0024 41 1 -2.4005 -5.4767 -0.0021 42 1 -1.1273 -6.3479 -0.8895 43 1 -1.1292 -6.3465 0.8904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425989767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:47 Heat of formation + Delta-G solvation = -35.012071 kcal Electronic energy + Delta-G solvation = -22491.849519 eV Core-core repulsion = 19117.175321 eV Total energy + Delta-G solvation = -3374.674198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55497 -38.69247 -37.49262 -35.43910 -34.78539 -32.52212 -30.42722 -30.12691 -27.82424 -27.45228 -26.99119 -26.40251 -24.00907 -22.27723 -21.52062 -20.94211 -18.74714 -18.42397 -17.08485 -16.58790 -16.33666 -16.20520 -15.46575 -15.22651 -14.80067 -14.61725 -14.39690 -14.05461 -13.79458 -13.64444 -13.52166 -13.35545 -12.56035 -12.52576 -12.49851 -12.08531 -11.77968 -11.50715 -11.31215 -11.30539 -11.25722 -11.07060 -11.01976 -10.80006 -10.65403 -10.61298 -9.92478 -9.22480 -9.20171 -8.62122 -8.48592 -7.68259 -7.30933 -6.04286 -4.06387 1.38131 1.56105 2.04117 3.08384 3.26032 3.33357 3.37045 3.40485 3.81527 4.43001 4.54666 4.82508 4.88066 4.95259 5.00976 5.06169 5.11548 5.15176 5.22237 5.29821 5.31564 5.37084 5.39354 5.44324 5.52943 5.55474 5.69110 5.71189 5.82397 6.01614 6.19047 6.27996 6.38280 6.43335 6.59238 6.79461 6.84985 7.08850 7.21469 7.39040 7.61971 7.76598 8.10472 8.36463 8.57913 9.02560 9.58540 11.06739 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003433 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.256131 B = 8153.322968 C = 9585.660990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.143 4.143 3 C -0.113 4.113 4 C 0.093 3.907 5 O -0.304 6.304 6 C 0.100 3.900 7 C -0.167 4.167 8 C -0.061 4.061 9 C 0.096 3.904 10 N -0.683 5.683 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.096 4.096 21 C -0.172 4.172 22 C 0.088 3.912 23 O -0.311 6.311 24 C 0.028 3.972 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.329 0.671 36 H -0.013 1.013 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 7.377 7.345 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.170 4.170 4 C 0.018 3.982 5 O -0.218 6.218 6 C 0.055 3.945 7 C -0.187 4.187 8 C -0.062 4.062 9 C -0.033 4.033 10 N -0.314 5.314 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.114 4.114 21 C -0.191 4.191 22 C 0.043 3.957 23 O -0.224 6.224 24 C -0.067 4.067 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.005 0.995 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.290 6.913 7.317 22.650 hybrid contribution 0.990 0.505 -0.685 1.305 sum -19.300 7.417 6.632 21.714 Atomic orbital electron populations 1.23764 0.95407 1.02397 0.99231 1.21535 0.95932 0.93888 1.02954 1.20757 1.00205 0.93543 1.02513 1.21511 0.91127 0.83664 1.01852 1.86065 1.34855 1.11519 1.89389 1.18079 0.90642 0.83047 1.02771 1.20990 0.92371 0.98544 1.06751 1.19754 0.96425 0.91841 0.98196 1.20851 0.88793 1.00624 0.93016 1.60724 1.17305 1.44156 1.09203 1.19581 0.80394 0.95940 0.97367 1.21146 0.92472 1.49617 0.92129 0.91987 1.24986 0.96667 0.95336 0.97553 1.69951 1.02395 1.49959 1.31473 0.86533 0.77330 0.78668 0.84708 1.20250 1.21328 1.20124 1.20785 0.91782 0.99170 0.99701 1.21029 0.96516 0.94668 1.06858 1.18162 0.82475 0.91542 1.03527 1.86132 1.13942 1.32917 1.89457 1.23011 0.94930 0.87613 1.01184 0.88489 0.87019 0.91148 0.91367 0.91623 0.90861 0.91104 0.85062 0.95465 0.90696 0.85425 0.99547 0.95299 0.92833 0.85295 0.85024 0.88577 0.92783 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 13.66 29.02 0.40 -1.37 16 2 C -0.14 -1.48 6.05 -101.07 -0.61 -2.09 16 3 C -0.11 -0.90 10.03 36.00 0.36 -0.53 16 4 C 0.09 1.08 5.14 36.01 0.19 1.27 16 5 O -0.30 -4.33 8.32 -34.23 -0.28 -4.62 16 6 C 0.10 1.49 6.70 -39.12 -0.26 1.23 16 7 C -0.17 -2.47 8.69 -39.46 -0.34 -2.81 16 8 C -0.06 -0.97 5.39 -104.62 -0.56 -1.53 16 9 C 0.10 1.72 5.81 -4.98 -0.03 1.70 16 10 N -0.68 -14.78 6.48 -116.34 -0.75 -15.54 16 11 C 0.19 5.08 5.44 -4.98 -0.03 5.05 16 12 C -0.52 -14.66 9.32 -34.44 -0.32 -14.98 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.10 -1.39 9.69 -39.58 -0.38 -1.77 16 21 C -0.17 -2.26 9.04 -39.46 -0.36 -2.62 16 22 C 0.09 1.27 6.70 -39.12 -0.26 1.01 16 23 O -0.31 -4.16 10.28 -34.23 -0.35 -4.51 16 24 C 0.03 0.24 9.81 101.05 0.99 1.24 16 25 H 0.10 0.81 8.04 -52.49 -0.42 0.39 16 26 H 0.11 1.32 6.84 -52.49 -0.36 0.96 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.07 0.83 7.65 -51.93 -0.40 0.43 16 31 H 0.07 0.75 7.67 -51.93 -0.40 0.36 16 32 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 33 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 35 H 0.33 6.91 8.72 -39.29 -0.34 6.57 16 36 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -31.96 362.10 -8.26 -40.22 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.71 Total: 3.10 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.32 Total: -14.73 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.02 Total: -41.64 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.64 Total: -9.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.96 -8.26 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425989767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.207 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds