Wall clock time and date at job start Tue Mar 31 2020 07:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.50701 * 120.00112 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.46878 * 0.02562 * 4 2 1 6 6 C 1.35995 * 116.99587 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.07439 * 359.72507 * 6 5 4 8 8 C 1.38248 * 119.99552 * 179.74455 * 7 6 5 9 9 C 1.50700 * 119.92374 * 180.25225 * 8 7 6 10 10 N 1.46898 * 109.47526 * 270.25810 * 9 8 7 11 11 C 1.46898 * 111.00059 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46998 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00040 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47028 * 60.00025 * 16 14 12 18 18 H 1.48501 * 109.47375 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47467 * 300.00153 * 16 14 12 20 20 C 1.38246 * 120.14817 * 0.50974 * 8 7 6 21 21 C 1.38242 * 120.14884 * 359.76851 * 20 8 7 22 22 C 1.38565 * 119.99815 * 359.97438 * 21 20 8 23 23 O 1.35996 * 120.07637 * 179.97438 * 22 21 20 24 24 C 1.42898 * 116.99713 * 0.02562 * 23 22 21 25 25 H 1.07994 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99900 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46709 * 269.99678 * 3 2 1 28 28 H 1.08994 * 109.47494 * 29.99540 * 3 2 1 29 29 H 1.09004 * 109.47456 * 150.00318 * 3 2 1 30 30 H 1.09002 * 109.47060 * 120.00135 * 4 2 1 31 31 H 1.09001 * 109.47380 * 240.00223 * 4 2 1 32 32 H 1.07994 * 119.99980 * 359.97438 * 7 6 5 33 33 H 1.09000 * 109.47412 * 30.25759 * 9 8 7 34 34 H 1.09000 * 109.47112 * 150.25577 * 9 8 7 35 35 H 1.00896 * 111.00258 * 56.04187 * 10 9 8 36 36 H 1.08995 * 109.46978 * 299.99581 * 11 10 9 37 37 H 1.08996 * 109.47050 * 59.99907 * 11 10 9 38 38 H 0.97005 * 119.99982 * 179.97438 * 15 14 12 39 39 H 1.08004 * 119.92680 * 179.74146 * 20 8 7 40 40 H 1.07997 * 120.00411 * 179.97438 * 21 20 8 41 41 H 1.09000 * 109.47236 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.47392 * 300.00389 * 24 23 22 43 43 H 1.09002 * 109.46922 * 59.99615 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6547 -3.6479 0.0015 7 6 3.0282 -3.8312 -0.0032 8 6 3.5549 -5.1094 0.0032 9 6 5.0489 -5.3068 0.0039 10 7 5.5350 -5.3718 -1.3808 11 6 6.9907 -5.5648 -1.4193 12 6 7.4515 -5.6272 -2.8528 13 1 6.7346 -5.5324 -3.6550 14 6 8.7883 -5.8041 -3.1402 15 7 9.6613 -5.9190 -2.1633 16 14 9.3593 -5.8821 -4.9170 17 1 9.0091 -4.6138 -5.6056 18 1 10.8310 -6.0771 -4.9560 19 1 8.6917 -7.0179 -5.6022 20 6 2.7142 -6.2068 0.0036 21 6 1.3430 -6.0310 0.0025 22 6 0.8084 -4.7526 0.0014 23 8 -0.5402 -4.5778 -0.0002 24 6 -1.3472 -5.7572 -0.0002 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.2451 1.6197 -1.0277 28 1 1.4744 2.0648 0.5137 29 1 3.0159 1.1748 0.5138 30 1 2.6902 -1.3632 -0.8894 31 1 2.6902 -1.3625 0.8906 32 1 3.6871 -2.9756 -0.0080 33 1 5.5256 -4.4718 0.5173 34 1 5.2924 -6.2364 0.5184 35 1 5.2653 -4.5484 -1.8978 36 1 7.4811 -4.7319 -0.9156 37 1 7.2472 -6.4964 -0.9148 38 1 10.6018 -6.0438 -2.3655 39 1 3.1296 -7.2038 0.0044 40 1 0.6884 -6.8900 0.0024 41 1 -2.4005 -5.4767 -0.0021 42 1 -1.1273 -6.3479 -0.8895 43 1 -1.1292 -6.3465 0.8904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425989767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:46 Heat of formation + Delta-G solvation = -54.530948 kcal Electronic energy + Delta-G solvation = -22492.695921 eV Core-core repulsion = 19117.175321 eV Total energy + Delta-G solvation = -3375.520600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61349 -39.66563 -38.67456 -36.74669 -36.00803 -34.52553 -31.80633 -31.18978 -29.15134 -28.15928 -27.89747 -27.82035 -25.56778 -23.47481 -23.30537 -22.19104 -19.58895 -19.48536 -18.61785 -17.94805 -17.62955 -17.18934 -16.74394 -16.33580 -16.19459 -16.00233 -15.64882 -15.37026 -15.19027 -14.68293 -14.43330 -14.29464 -14.27141 -13.62037 -13.48483 -13.37090 -13.10748 -12.83254 -12.80138 -12.58005 -12.48801 -12.22720 -12.18476 -12.07756 -12.00817 -11.90098 -11.79445 -11.30888 -10.65944 -9.99400 -9.72777 -9.15221 -8.76676 -8.22478 -6.33895 0.27022 0.41449 1.24494 1.41618 1.45010 1.53103 2.11039 2.36223 2.40090 2.67347 3.10642 3.60464 3.75231 3.83967 3.95366 4.00812 4.12120 4.19451 4.27313 4.31336 4.39906 4.44125 4.46290 4.55680 4.63092 4.69504 4.76398 4.81785 4.83282 4.98418 5.07651 5.12148 5.15740 5.24260 5.29725 5.59185 5.62038 5.64760 5.68350 5.82389 6.00815 6.14986 6.41859 6.60425 6.68014 6.86701 7.36903 8.88620 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003433 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.256131 B = 8153.322968 C = 9585.660990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C -0.111 4.111 4 C 0.086 3.914 5 O -0.315 6.315 6 C 0.085 3.915 7 C -0.168 4.168 8 C -0.078 4.078 9 C 0.102 3.898 10 N -0.682 5.682 11 C 0.208 3.792 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.101 4.101 21 C -0.165 4.165 22 C 0.084 3.916 23 O -0.329 6.329 24 C 0.017 3.983 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.333 0.667 36 H -0.036 1.036 37 H 0.004 0.996 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.162 0.838 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.359 7.637 6.571 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.168 4.168 4 C 0.011 3.989 5 O -0.229 6.229 6 C 0.040 3.960 7 C -0.187 4.187 8 C -0.079 4.079 9 C -0.027 4.027 10 N -0.312 5.312 11 C 0.081 3.919 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.120 4.120 21 C -0.183 4.183 22 C 0.038 3.962 23 O -0.243 6.243 24 C -0.077 4.077 25 H 0.136 0.864 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.150 0.850 36 H -0.019 1.019 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.180 0.820 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.613 7.177 6.552 23.697 hybrid contribution 1.261 0.417 -0.376 1.381 sum -20.352 7.594 6.176 22.583 Atomic orbital electron populations 1.23812 0.95518 1.02523 0.99505 1.21760 0.96156 0.94202 1.02786 1.20795 1.00343 0.92435 1.03184 1.21717 0.91273 0.83706 1.02205 1.86066 1.35755 1.11735 1.89364 1.18282 0.90824 0.83716 1.03155 1.21023 0.92697 0.98434 1.06559 1.19556 0.94947 0.92835 1.00542 1.20806 0.90507 1.00633 0.90766 1.60598 1.14292 1.44539 1.11797 1.19233 0.82962 0.93696 0.96056 1.21504 0.93056 1.49974 0.93046 0.91899 1.25932 0.96710 0.94571 1.02344 1.70076 1.02824 1.50515 1.33895 0.85394 0.76938 0.79133 0.78891 1.19127 1.20686 1.19372 1.20944 0.92446 0.99105 0.99460 1.21275 0.96202 0.95290 1.05576 1.18409 0.83221 0.91786 1.02735 1.86119 1.13543 1.35461 1.89197 1.23352 0.95382 0.86684 1.02283 0.86353 0.88954 0.90545 0.89950 0.91145 0.90860 0.90404 0.84402 0.95301 0.90838 0.84990 1.01858 0.97821 0.92549 0.84596 0.82019 0.86416 0.91854 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 13.66 67.78 0.93 -2.60 16 2 C -0.15 -2.95 6.05 -16.49 -0.10 -3.05 16 3 C -0.11 -1.57 10.03 71.24 0.71 -0.86 16 4 C 0.09 1.97 5.14 71.24 0.37 2.33 16 5 O -0.31 -8.96 8.32 -79.63 -0.66 -9.62 16 6 C 0.09 2.53 6.70 22.57 0.15 2.68 16 7 C -0.17 -4.95 8.69 22.35 0.19 -4.75 16 8 C -0.08 -2.45 5.39 -19.86 -0.11 -2.55 16 9 C 0.10 3.69 5.81 85.56 0.50 4.19 16 10 N -0.68 -29.96 6.48 -522.00 -3.38 -33.34 16 11 C 0.21 11.23 5.44 85.56 0.47 11.69 16 12 C -0.54 -30.92 9.32 25.60 0.24 -30.68 16 13 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 16 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.10 -2.83 9.69 22.27 0.22 -2.62 16 21 C -0.16 -4.05 9.04 22.35 0.20 -3.85 16 22 C 0.08 2.33 6.70 22.57 0.15 2.48 16 23 O -0.33 -8.36 10.28 -79.64 -0.82 -9.18 16 24 C 0.02 0.26 9.81 113.37 1.11 1.37 16 25 H 0.12 1.78 8.04 -2.91 -0.02 1.76 16 26 H 0.09 2.20 6.84 -2.91 -0.02 2.18 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.07 1.66 7.65 -2.39 -0.02 1.64 16 31 H 0.08 1.64 7.67 -2.39 -0.02 1.63 16 32 H 0.14 3.73 6.30 -2.91 -0.02 3.71 16 33 H 0.03 1.03 8.09 -2.39 -0.02 1.02 16 34 H 0.07 2.65 8.08 -2.39 -0.02 2.64 16 35 H 0.33 14.15 8.72 -89.70 -0.78 13.37 16 36 H -0.04 -2.08 8.14 -2.39 -0.02 -2.10 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.16 2.87 6.30 -2.91 -0.02 2.85 16 41 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.06 0.84 7.66 -2.38 -0.02 0.82 16 43 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 Total: -1.00 -68.63 362.10 3.15 -65.48 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.21 Total: 21.99 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.49 Total: -25.61 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -3.10 Total: -89.43 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.48 Total: -18.80 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.63 3.15 -65.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425989767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.947 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds